Wall clock time and date at job start Mon Mar 30 2020 02:01:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31573 * 1 3 3 Si 1.86796 * 120.00180 * 2 1 4 4 H 1.48499 * 109.47360 * 240.00022 * 3 2 1 5 5 H 1.48500 * 109.47063 * 0.02562 * 3 2 1 6 6 H 1.48501 * 109.47282 * 119.99959 * 3 2 1 7 7 C 1.38635 * 119.99885 * 180.02562 * 2 1 3 8 8 H 1.07999 * 119.99984 * 180.02562 * 7 2 1 9 9 O 1.34924 * 120.00135 * 359.97438 * 7 2 1 10 10 N 1.46302 * 114.00126 * 180.02562 * 9 7 2 11 11 C 1.46900 * 111.00169 * 180.02562 * 10 9 7 12 12 C 1.54894 * 110.48225 * 303.24189 * 11 10 9 13 13 C 1.55238 * 102.58338 * 156.67559 * 12 11 10 14 14 C 1.54266 * 104.23333 * 322.08174 * 13 12 11 15 15 C 1.53869 * 106.59800 * 23.61579 * 14 13 12 16 16 H 0.97007 * 120.00249 * 359.97438 * 1 2 3 17 17 H 1.00905 * 111.00216 * 56.04455 * 10 9 7 18 18 H 1.09002 * 110.43501 * 180.69999 * 11 10 9 19 19 H 1.08996 * 110.75388 * 275.05913 * 12 11 10 20 20 H 1.08993 * 110.76071 * 38.44139 * 12 11 10 21 21 H 1.09005 * 110.46917 * 203.39204 * 13 12 11 22 22 H 1.09007 * 110.58541 * 80.83124 * 13 12 11 23 23 H 1.08999 * 110.03060 * 264.32313 * 14 13 12 24 24 H 1.09006 * 110.06829 * 142.91691 * 14 13 12 25 25 H 1.09001 * 110.02983 * 240.71432 * 15 14 13 26 26 H 1.08995 * 110.03881 * 119.28625 * 15 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3157 0.0000 0.0000 3 14 2.2498 1.6177 0.0000 4 1 3.1035 1.6964 -1.2125 5 1 1.2848 2.7464 0.0006 6 1 3.1035 1.6964 1.2125 7 6 2.0089 -1.2006 -0.0005 8 1 3.0889 -1.2006 -0.0001 9 8 1.3343 -2.3691 -0.0005 10 7 2.1942 -3.5527 -0.0005 11 6 1.3941 -4.7847 -0.0012 12 6 0.4314 -4.8064 1.2121 13 6 -0.6853 -5.7761 0.7404 14 6 -0.8610 -5.4523 -0.7576 15 6 0.4611 -4.8220 -1.2291 16 1 -0.4851 0.8401 0.0004 17 1 2.8324 -3.5360 0.7808 18 1 2.0434 -5.6602 0.0113 19 1 0.9347 -5.1944 2.0976 20 1 0.0257 -3.8126 1.4012 21 1 -1.6110 -5.5845 1.2832 22 1 -0.3742 -6.8124 0.8728 23 1 -1.6806 -4.7466 -0.8934 24 1 -1.0593 -6.3665 -1.3172 25 1 0.2833 -3.8103 -1.5937 26 1 0.9049 -5.4306 -2.0169 RHF calculation, no. of doubly occupied orbitals= 32 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000307617531.mol2 26 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:01:08 Heat of formation + Delta-G solvation = -3.190410 kcal Electronic energy + Delta-G solvation = -10102.614206 eV Core-core repulsion = 8183.057128 eV Total energy + Delta-G solvation = -1919.557077 eV No. of doubly occupied orbitals = 32 Molecular weight (most abundant/longest-lived isotopes) = 171.100 amu Computer time = 0.13 seconds Orbital eigenvalues (eV) -37.66594 -34.94775 -31.87228 -30.06244 -28.09673 -25.32011 -24.02418 -20.06736 -19.21433 -17.55283 -15.67240 -15.34027 -14.56432 -14.04756 -13.00356 -12.76837 -12.75390 -12.13007 -11.25280 -11.11482 -10.83674 -10.59941 -10.54964 -10.48482 -10.29644 -10.21948 -9.90507 -9.42397 -8.29466 -7.38777 -5.93992 -3.55412 3.34462 3.35627 3.39371 4.07567 4.67037 5.13356 5.26750 5.35490 5.42020 5.82794 5.99493 6.04645 6.08395 6.11580 6.30283 6.37561 6.53010 6.80440 6.92393 7.05685 7.16761 7.53046 7.95634 8.47064 9.46419 9.95999 11.25600 Molecular weight = 171.10amu Principal moments of inertia in cm(-1) A = 0.082831 B = 0.011970 C = 0.011463 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 337.957737 B = 2338.523764 C = 2442.026223 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.898 5.898 2 C 0.019 3.981 3 Si 0.931 3.069 4 H -0.278 1.278 5 H -0.285 1.285 6 H -0.279 1.279 7 C -0.365 4.365 8 H 0.077 0.923 9 O -0.126 6.126 10 N -0.537 5.537 11 C 0.083 3.917 12 C -0.154 4.154 13 C -0.119 4.119 14 C -0.121 4.121 15 C -0.112 4.112 16 H 0.259 0.741 17 H 0.314 0.686 18 H 0.082 0.918 19 H 0.053 0.947 20 H 0.085 0.915 21 H 0.058 0.942 22 H 0.056 0.944 23 H 0.062 0.938 24 H 0.054 0.946 25 H 0.087 0.913 26 H 0.053 0.947 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.861 -8.440 0.876 8.529 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.542 5.542 2 C -0.179 4.179 3 Si 0.759 3.241 4 H -0.204 1.204 5 H -0.210 1.210 6 H -0.205 1.205 7 C -0.446 4.446 8 H 0.094 0.906 9 O -0.132 6.132 10 N -0.203 5.203 11 C -0.028 4.028 12 C -0.193 4.193 13 C -0.157 4.157 14 C -0.159 4.159 15 C -0.150 4.150 16 H 0.069 0.931 17 H 0.129 0.871 18 H 0.100 0.900 19 H 0.072 0.928 20 H 0.104 0.896 21 H 0.076 0.924 22 H 0.075 0.925 23 H 0.081 0.919 24 H 0.072 0.928 25 H 0.105 0.895 26 H 0.072 0.928 Dipole moment (debyes) X Y Z Total from point charges 0.610 -8.338 0.165 8.362 hybrid contribution 0.301 0.799 1.008 1.321 sum 0.911 -7.540 1.173 7.685 Atomic orbital electron populations 1.69996 1.05340 1.26148 1.52727 1.24881 0.95721 0.97518 0.99796 0.85953 0.78364 0.81483 0.78347 1.20371 1.21030 1.20527 1.20950 0.91642 0.82795 1.49199 0.90586 1.88983 1.20639 1.08155 1.95467 1.66510 1.13184 0.95913 1.44691 1.22521 0.94202 0.91406 0.94638 1.23213 0.97334 1.00989 0.97795 1.22303 0.98737 0.98457 0.96243 1.22097 0.98610 0.99671 0.95532 1.22017 0.93766 1.02504 0.96669 0.93122 0.87056 0.90016 0.92803 0.89623 0.92362 0.92478 0.91902 0.92758 0.89480 0.92781 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -28.24 13.67 55.48 0.76 -27.48 15 2 C 0.02 0.57 5.49 -17.52 -0.10 0.48 15 3 Si 0.93 22.40 29.55 -169.99 -5.02 17.37 15 4 H -0.28 -6.53 7.11 56.52 0.40 -6.13 15 5 H -0.28 -6.75 7.11 56.52 0.40 -6.35 15 6 H -0.28 -6.50 7.11 56.52 0.40 -6.09 15 7 C -0.37 -10.82 10.10 30.88 0.31 -10.51 15 8 H 0.08 2.14 7.82 -52.49 -0.41 1.73 15 9 O -0.13 -3.65 8.80 4.82 0.04 -3.60 15 10 N -0.54 -12.31 7.16 -3.26 -0.02 -12.33 15 11 C 0.08 1.59 3.82 -66.05 -0.25 1.34 15 12 C -0.15 -2.83 6.48 -24.55 -0.16 -2.99 15 13 C -0.12 -1.86 6.84 -24.88 -0.17 -2.03 15 14 C -0.12 -1.98 6.80 -25.62 -0.17 -2.15 15 15 C -0.11 -2.11 6.41 -25.62 -0.16 -2.28 15 16 H 0.26 7.64 8.31 -40.82 -0.34 7.30 15 17 H 0.31 6.65 8.96 -39.29 -0.35 6.30 15 18 H 0.08 1.33 8.14 -51.93 -0.42 0.91 15 19 H 0.05 0.88 8.14 -51.93 -0.42 0.46 15 20 H 0.09 1.93 7.25 -51.93 -0.38 1.56 15 21 H 0.06 0.87 8.14 -51.93 -0.42 0.45 15 22 H 0.06 0.76 8.14 -51.93 -0.42 0.34 15 23 H 0.06 1.09 8.14 -51.93 -0.42 0.66 15 24 H 0.05 0.75 8.14 -51.93 -0.42 0.33 15 25 H 0.09 2.02 7.18 -51.93 -0.37 1.65 15 26 H 0.05 0.90 8.14 -51.93 -0.42 0.48 15 LS Contribution 222.97 15.07 3.36 3.36 Total: -1.00 -32.04 222.97 -5.20 -37.24 By element: Atomic # 1 Polarization: 7.19 SS G_CDS: -3.61 Total: 3.58 kcal Atomic # 6 Polarization: -17.44 SS G_CDS: -0.70 Total: -18.14 kcal Atomic # 7 Polarization: -40.54 SS G_CDS: 0.74 Total: -39.81 kcal Atomic # 8 Polarization: -3.65 SS G_CDS: 0.04 Total: -3.60 kcal Atomic # 14 Polarization: 22.40 SS G_CDS: -5.02 Total: 17.37 kcal Total LS contribution 3.36 Total: 3.36 kcal Total: -32.04 -5.20 -37.24 kcal The number of atoms in the molecule is 26 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000307617531.mol2 26 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 34.051 kcal (2) G-P(sol) polarization free energy of solvation -32.045 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 2.006 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.196 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.241 kcal (6) G-S(sol) free energy of system = (1) + (5) -3.190 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.13 seconds