Wall clock time and date at job start Mon Mar 30 2020 02:01:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31573 * 1 3 3 Si 1.86796 * 120.00180 * 2 1 4 4 H 1.48499 * 109.47360 * 240.00022 * 3 2 1 5 5 H 1.48500 * 109.47063 * 0.02562 * 3 2 1 6 6 H 1.48501 * 109.47282 * 119.99959 * 3 2 1 7 7 C 1.38635 * 119.99885 * 180.02562 * 2 1 3 8 8 H 1.07999 * 119.99984 * 180.02562 * 7 2 1 9 9 O 1.34924 * 120.00135 * 359.97438 * 7 2 1 10 10 N 1.46302 * 114.00126 * 180.02562 * 9 7 2 11 11 C 1.46900 * 111.00169 * 180.02562 * 10 9 7 12 12 C 1.54894 * 110.48225 * 303.24189 * 11 10 9 13 13 C 1.55238 * 102.58338 * 156.67559 * 12 11 10 14 14 C 1.54266 * 104.23333 * 322.08174 * 13 12 11 15 15 C 1.53869 * 106.59800 * 23.61579 * 14 13 12 16 16 H 0.97007 * 120.00249 * 359.97438 * 1 2 3 17 17 H 1.00905 * 111.00216 * 56.04455 * 10 9 7 18 18 H 1.09002 * 110.43501 * 180.69999 * 11 10 9 19 19 H 1.08996 * 110.75388 * 275.05913 * 12 11 10 20 20 H 1.08993 * 110.76071 * 38.44139 * 12 11 10 21 21 H 1.09005 * 110.46917 * 203.39204 * 13 12 11 22 22 H 1.09007 * 110.58541 * 80.83124 * 13 12 11 23 23 H 1.08999 * 110.03060 * 264.32313 * 14 13 12 24 24 H 1.09006 * 110.06829 * 142.91691 * 14 13 12 25 25 H 1.09001 * 110.02983 * 240.71432 * 15 14 13 26 26 H 1.08995 * 110.03881 * 119.28625 * 15 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3157 0.0000 0.0000 3 14 2.2498 1.6177 0.0000 4 1 3.1035 1.6964 -1.2125 5 1 1.2848 2.7464 0.0006 6 1 3.1035 1.6964 1.2125 7 6 2.0089 -1.2006 -0.0005 8 1 3.0889 -1.2006 -0.0001 9 8 1.3343 -2.3691 -0.0005 10 7 2.1942 -3.5527 -0.0005 11 6 1.3941 -4.7847 -0.0012 12 6 0.4314 -4.8064 1.2121 13 6 -0.6853 -5.7761 0.7404 14 6 -0.8610 -5.4523 -0.7576 15 6 0.4611 -4.8220 -1.2291 16 1 -0.4851 0.8401 0.0004 17 1 2.8324 -3.5360 0.7808 18 1 2.0434 -5.6602 0.0113 19 1 0.9347 -5.1944 2.0976 20 1 0.0257 -3.8126 1.4012 21 1 -1.6110 -5.5845 1.2832 22 1 -0.3742 -6.8124 0.8728 23 1 -1.6806 -4.7466 -0.8934 24 1 -1.0593 -6.3665 -1.3172 25 1 0.2833 -3.8103 -1.5937 26 1 0.9049 -5.4306 -2.0169 RHF calculation, no. of doubly occupied orbitals= 32 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000307617531.mol2 26 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:01:07 Heat of formation + Delta-G solvation = -25.763782 kcal Electronic energy + Delta-G solvation = -10103.593061 eV Core-core repulsion = 8183.057128 eV Total energy + Delta-G solvation = -1920.535932 eV No. of doubly occupied orbitals = 32 Molecular weight (most abundant/longest-lived isotopes) = 171.100 amu Computer time = 0.13 seconds Orbital eigenvalues (eV) -39.19350 -36.94395 -33.95324 -31.88636 -29.54009 -27.04861 -26.14407 -21.45304 -20.74454 -19.66605 -17.60750 -17.01851 -16.18217 -15.80244 -14.81940 -14.52605 -14.28503 -13.96248 -13.24876 -12.98555 -12.42624 -12.22053 -12.11704 -12.06247 -11.94973 -11.91207 -11.36802 -11.22114 -10.44244 -9.29073 -8.17970 -5.85136 1.39281 1.48617 1.55049 2.14420 2.71154 3.17411 3.71133 3.86036 3.95517 4.46761 4.51548 4.59613 4.65378 4.80949 4.91883 5.06428 5.17857 5.23202 5.31690 5.35326 5.51601 5.54234 6.17539 6.33538 7.22479 7.78756 9.04531 Molecular weight = 171.10amu Principal moments of inertia in cm(-1) A = 0.082831 B = 0.011970 C = 0.011463 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 337.957737 B = 2338.523764 C = 2442.026223 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.947 5.947 2 C -0.046 4.046 3 Si 1.012 2.988 4 H -0.266 1.266 5 H -0.281 1.281 6 H -0.263 1.263 7 C -0.379 4.379 8 H 0.084 0.916 9 O -0.170 6.170 10 N -0.536 5.536 11 C 0.075 3.925 12 C -0.153 4.153 13 C -0.110 4.110 14 C -0.119 4.119 15 C -0.113 4.113 16 H 0.260 0.740 17 H 0.325 0.675 18 H 0.126 0.874 19 H 0.077 0.923 20 H 0.030 0.970 21 H 0.061 0.939 22 H 0.095 0.905 23 H 0.040 0.960 24 H 0.090 0.910 25 H 0.030 0.970 26 H 0.078 0.922 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.958 -9.666 1.086 9.922 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.594 5.594 2 C -0.239 4.239 3 Si 0.834 3.166 4 H -0.191 1.191 5 H -0.207 1.207 6 H -0.188 1.188 7 C -0.460 4.460 8 H 0.102 0.898 9 O -0.175 6.175 10 N -0.205 5.205 11 C -0.035 4.035 12 C -0.192 4.192 13 C -0.148 4.148 14 C -0.157 4.157 15 C -0.151 4.151 16 H 0.069 0.931 17 H 0.140 0.860 18 H 0.143 0.857 19 H 0.095 0.905 20 H 0.049 0.951 21 H 0.080 0.920 22 H 0.113 0.887 23 H 0.059 0.941 24 H 0.109 0.891 25 H 0.049 0.951 26 H 0.097 0.903 Dipole moment (debyes) X Y Z Total from point charges 1.712 -9.584 0.378 9.743 hybrid contribution -0.016 1.026 0.930 1.385 sum 1.696 -8.558 1.308 8.822 Atomic orbital electron populations 1.70186 1.07547 1.27297 1.54327 1.26190 0.96803 1.01783 0.99165 0.84729 0.77020 0.75618 0.79195 1.19117 1.20652 1.18781 1.21431 0.92167 0.83618 1.48737 0.89821 1.88934 1.23352 1.09672 1.95514 1.66427 1.13349 0.95211 1.45509 1.22880 0.94920 0.90767 0.94948 1.23102 0.98404 0.99078 0.98591 1.22310 0.97851 0.99553 0.95104 1.22099 0.96269 1.00464 0.96839 1.22011 0.95636 0.99980 0.97484 0.93119 0.86015 0.85676 0.90460 0.95061 0.92000 0.88672 0.94111 0.89096 0.95051 0.90297 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.95 -61.62 13.67 21.61 0.30 -61.33 15 2 C -0.05 -2.78 5.49 84.83 0.47 -2.31 15 3 Si 1.01 46.27 29.55 68.60 2.03 48.30 15 4 H -0.27 -11.57 7.11 99.48 0.71 -10.86 15 5 H -0.28 -12.55 7.11 99.48 0.71 -11.85 15 6 H -0.26 -11.23 7.11 99.48 0.71 -10.53 15 7 C -0.38 -22.97 10.10 67.91 0.69 -22.28 15 8 H 0.08 4.73 7.82 -2.91 -0.02 4.71 15 9 O -0.17 -10.18 8.80 16.89 0.15 -10.03 15 10 N -0.54 -24.66 7.16 -164.22 -1.18 -25.84 15 11 C 0.07 2.75 3.82 45.99 0.18 2.93 15 12 C -0.15 -5.46 6.48 32.01 0.21 -5.26 15 13 C -0.11 -3.14 6.84 31.79 0.22 -2.93 15 14 C -0.12 -3.70 6.80 31.32 0.21 -3.48 15 15 C -0.11 -4.22 6.41 31.32 0.20 -4.02 15 16 H 0.26 15.82 8.31 -92.70 -0.77 15.05 15 17 H 0.32 13.61 8.96 -89.69 -0.80 12.81 15 18 H 0.13 3.58 8.14 -2.39 -0.02 3.56 15 19 H 0.08 2.36 8.14 -2.39 -0.02 2.34 15 20 H 0.03 1.45 7.25 -2.39 -0.02 1.43 15 21 H 0.06 1.73 8.14 -2.38 -0.02 1.71 15 22 H 0.09 2.06 8.14 -2.38 -0.02 2.04 15 23 H 0.04 1.42 8.14 -2.39 -0.02 1.40 15 24 H 0.09 2.18 8.14 -2.38 -0.02 2.16 15 25 H 0.03 1.50 7.18 -2.39 -0.02 1.49 15 26 H 0.08 2.49 8.14 -2.39 -0.02 2.47 15 Total: -1.00 -72.14 222.97 3.81 -68.32 By element: Atomic # 1 Polarization: 17.58 SS G_CDS: 0.35 Total: 17.93 kcal Atomic # 6 Polarization: -39.52 SS G_CDS: 2.17 Total: -37.36 kcal Atomic # 7 Polarization: -86.28 SS G_CDS: -0.88 Total: -87.16 kcal Atomic # 8 Polarization: -10.18 SS G_CDS: 0.15 Total: -10.03 kcal Atomic # 14 Polarization: 46.27 SS G_CDS: 2.03 Total: 48.30 kcal Total: -72.14 3.81 -68.32 kcal The number of atoms in the molecule is 26 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000307617531.mol2 26 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 42.561 kcal (2) G-P(sol) polarization free energy of solvation -72.139 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -29.578 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.815 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.325 kcal (6) G-S(sol) free energy of system = (1) + (5) -25.764 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.13 seconds