Wall clock time and date at job start Mon Mar 30 2020 02:14:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 H 1.09000 * 110.55317 * 2 1 4 4 C 1.54996 * 110.61389 * 123.05330 * 2 1 3 5 5 C 1.54809 * 102.09241 * 155.52195 * 4 2 1 6 6 H 1.08998 * 110.59794 * 220.38034 * 5 4 2 7 7 N 1.46506 * 110.48566 * 97.79428 * 5 4 2 8 8 C 1.36938 * 119.99589 * 158.78144 * 7 5 4 9 9 H 1.07999 * 120.00325 * 359.97438 * 8 7 5 10 10 C 1.38815 * 119.99817 * 180.02562 * 8 7 5 11 11 N 1.31621 * 119.99673 * 359.71804 * 10 8 7 12 12 Si 1.86795 * 120.00115 * 179.97438 * 10 8 7 13 13 H 1.48503 * 109.47163 * 59.99668 * 12 10 8 14 14 H 1.48505 * 109.47234 * 179.97438 * 12 10 8 15 15 H 1.48492 * 109.47124 * 299.99692 * 12 10 8 16 16 C 1.54099 * 104.18771 * 339.11944 * 5 4 2 17 17 O 1.43749 * 107.29270 * 357.96689 * 16 5 4 18 18 H 1.08999 * 109.47228 * 181.42384 * 1 2 3 19 19 H 1.08999 * 109.47133 * 301.43235 * 1 2 3 20 20 H 1.09002 * 109.46809 * 61.42446 * 1 2 3 21 21 H 1.09000 * 110.91211 * 37.32083 * 4 2 1 22 22 H 1.09000 * 110.90584 * 273.72082 * 4 2 1 23 23 H 0.96999 * 120.00080 * 338.77634 * 7 5 4 24 24 H 0.97000 * 120.00043 * 180.02562 * 11 10 8 25 25 H 1.08995 * 109.88068 * 117.39540 * 16 5 4 26 26 H 1.09003 * 109.87317 * 238.39882 * 16 5 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.9127 1.0206 0.0000 4 6 2.0757 -0.7913 1.2159 5 6 3.4794 -1.2180 0.7217 6 1 3.6996 -2.2404 1.0287 7 7 4.5025 -0.3000 1.2288 8 6 5.8101 -0.7012 1.2945 9 1 6.0872 -1.6942 0.9730 10 6 6.7795 0.1684 1.7755 11 7 6.4425 1.3802 2.1631 12 14 8.5632 -0.3790 1.8658 13 1 9.0419 -0.7329 0.5054 14 1 9.3930 0.7258 2.4103 15 1 8.6728 -1.5645 2.7532 16 6 3.3839 -1.1243 -0.8134 17 8 2.0384 -0.7337 -1.1348 18 1 -0.3633 -1.0273 0.0255 19 1 -0.3633 0.5359 0.8768 20 1 -0.3633 0.4916 -0.9025 21 1 1.4548 -1.6628 1.4234 22 1 2.1508 -0.1508 2.0948 23 1 4.2536 0.5918 1.5179 24 1 7.1198 1.9880 2.4988 25 1 4.0854 -0.3767 -1.1835 26 1 3.6070 -2.0941 -1.2584 RHF calculation, no. of doubly occupied orbitals= 32 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000402367935.mol2 26 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:14:55 Heat of formation + Delta-G solvation = -42.465361 kcal Electronic energy + Delta-G solvation = -10085.830120 eV Core-core repulsion = 8164.569953 eV Total energy + Delta-G solvation = -1921.260167 eV No. of doubly occupied orbitals = 32 Molecular weight (most abundant/longest-lived isotopes) = 171.100 amu Computer time = 0.11 seconds Orbital eigenvalues (eV) -38.88462 -34.35644 -31.75934 -31.31292 -28.21050 -25.42153 -23.59281 -20.87772 -20.06349 -17.30544 -15.89585 -15.05911 -14.60058 -14.42121 -13.53471 -13.23673 -12.36104 -12.28054 -11.90477 -11.56739 -11.05105 -10.84153 -10.77200 -10.59151 -10.25363 -9.96557 -9.70354 -9.06838 -8.94202 -7.03367 -5.81542 -3.11694 3.42118 3.46453 3.47507 4.41161 4.56764 5.19752 5.25643 5.51555 5.55195 5.62253 5.82358 5.84912 5.99402 6.10774 6.22355 6.34497 6.46638 6.49619 6.71272 6.87533 7.48276 7.67222 8.36919 9.47821 10.03431 10.38666 11.40881 Molecular weight = 171.10amu Principal moments of inertia in cm(-1) A = 0.095617 B = 0.011350 C = 0.010827 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 292.766038 B = 2466.301812 C = 2585.607488 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C 0.072 3.928 3 H 0.067 0.933 4 C -0.157 4.157 5 C 0.146 3.854 6 H 0.061 0.939 7 N -0.718 5.718 8 C -0.247 4.247 9 H 0.071 0.929 10 C -0.011 4.011 11 N -0.932 5.932 12 Si 0.910 3.090 13 H -0.285 1.285 14 H -0.290 1.290 15 H -0.285 1.285 16 C 0.022 3.978 17 O -0.389 6.389 18 H 0.059 0.941 19 H 0.066 0.934 20 H 0.057 0.943 21 H 0.071 0.929 22 H 0.081 0.919 23 H 0.385 0.615 24 H 0.257 0.743 25 H 0.065 0.935 26 H 0.068 0.932 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.288 -3.253 -2.460 9.238 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C 0.014 3.986 3 H 0.085 0.915 4 C -0.196 4.196 5 C 0.035 3.965 6 H 0.079 0.921 7 N -0.359 5.359 8 C -0.378 4.378 9 H 0.089 0.911 10 C -0.207 4.207 11 N -0.580 5.580 12 Si 0.740 3.260 13 H -0.212 1.212 14 H -0.216 1.216 15 H -0.212 1.212 16 C -0.058 4.058 17 O -0.309 6.309 18 H 0.078 0.922 19 H 0.085 0.915 20 H 0.076 0.924 21 H 0.090 0.910 22 H 0.099 0.901 23 H 0.219 0.781 24 H 0.067 0.933 25 H 0.083 0.917 26 H 0.087 0.913 Dipole moment (debyes) X Y Z Total from point charges -8.218 -3.370 -2.640 9.266 hybrid contribution 1.154 0.096 0.296 1.196 sum -7.064 -3.274 -2.344 8.131 Atomic orbital electron populations 1.21762 0.94139 1.02272 1.01832 1.23026 0.94023 0.95728 0.85788 0.91535 1.23403 0.97311 1.00348 0.98492 1.21536 0.88449 0.95288 0.91205 0.92068 1.42464 1.03426 1.14284 1.75774 1.19233 0.84059 0.98321 1.36172 0.91058 1.24770 0.98258 0.96100 1.01599 1.69654 1.33105 1.06329 1.48932 0.86234 0.84675 0.77313 0.77756 1.21163 1.21634 1.21175 1.24234 0.83029 0.99551 0.98969 1.88741 1.29102 1.73793 1.39227 0.92222 0.91520 0.92398 0.90995 0.90087 0.78093 0.93336 0.91676 0.91336 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.88 9.66 37.16 0.36 -1.52 15 2 C 0.07 1.21 3.98 -25.67 -0.10 1.11 15 3 H 0.07 1.18 8.14 -51.93 -0.42 0.76 15 4 C -0.16 -2.72 6.22 -24.72 -0.15 -2.87 15 5 C 0.15 3.03 3.69 -66.40 -0.25 2.79 15 6 H 0.06 1.26 8.11 -51.93 -0.42 0.83 15 7 N -0.72 -18.20 5.06 -51.94 -0.26 -18.46 15 8 C -0.25 -6.87 9.97 -15.06 -0.15 -7.02 15 9 H 0.07 1.91 7.83 -52.49 -0.41 1.50 15 10 C -0.01 -0.32 5.50 -17.43 -0.10 -0.41 15 11 N -0.93 -28.13 13.06 55.49 0.72 -27.40 15 12 Si 0.91 22.31 29.55 -169.99 -5.02 17.29 15 13 H -0.29 -6.88 7.11 56.52 0.40 -6.48 15 14 H -0.29 -7.17 7.11 56.52 0.40 -6.77 15 15 H -0.29 -6.86 7.11 56.52 0.40 -6.46 15 16 C 0.02 0.43 7.50 37.73 0.28 0.72 15 17 O -0.39 -7.46 11.22 -35.23 -0.40 -7.85 15 18 H 0.06 0.75 8.13 -51.93 -0.42 0.33 15 19 H 0.07 0.76 8.14 -51.93 -0.42 0.33 15 20 H 0.06 0.72 8.14 -51.93 -0.42 0.30 15 21 H 0.07 1.10 8.05 -51.93 -0.42 0.68 15 22 H 0.08 1.42 7.96 -51.93 -0.41 1.01 15 23 H 0.38 10.30 7.72 -40.82 -0.32 9.98 15 24 H 0.26 7.50 8.31 -40.82 -0.34 7.16 15 25 H 0.06 1.44 7.93 -51.93 -0.41 1.02 15 26 H 0.07 1.25 8.14 -51.93 -0.42 0.82 15 LS Contribution 223.35 15.07 3.37 3.37 Total: -1.00 -29.92 223.35 -5.34 -35.26 By element: Atomic # 1 Polarization: 8.66 SS G_CDS: -3.64 Total: 5.02 kcal Atomic # 6 Polarization: -7.10 SS G_CDS: -0.10 Total: -7.21 kcal Atomic # 7 Polarization: -46.33 SS G_CDS: 0.46 Total: -45.86 kcal Atomic # 8 Polarization: -7.46 SS G_CDS: -0.40 Total: -7.85 kcal Atomic # 14 Polarization: 22.31 SS G_CDS: -5.02 Total: 17.29 kcal Total LS contribution 3.37 Total: 3.37 kcal Total: -29.92 -5.34 -35.26 kcal The number of atoms in the molecule is 26 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000402367935.mol2 26 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -7.208 kcal (2) G-P(sol) polarization free energy of solvation -29.923 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -37.130 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.335 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.258 kcal (6) G-S(sol) free energy of system = (1) + (5) -42.465 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.11 seconds