Wall clock time and date at job start Mon Mar 30 2020 02:14:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.09001 * 110.41918 * 2 1 4 4 C 1.54799 * 110.31237 * 237.65271 * 2 1 3 5 5 C 1.54505 * 103.91507 * 217.11734 * 4 2 1 6 6 H 1.09005 * 110.51105 * 118.81259 * 5 4 2 7 7 N 1.46504 * 110.51058 * 241.38905 * 5 4 2 8 8 C 1.36934 * 119.99567 * 203.09660 * 7 5 4 9 9 H 1.08001 * 120.00537 * 359.97438 * 8 7 5 10 10 C 1.38811 * 119.99798 * 179.97438 * 8 7 5 11 11 N 1.31624 * 120.00134 * 359.97438 * 10 8 7 12 12 Si 1.86803 * 120.00229 * 179.97438 * 10 8 7 13 13 H 1.48500 * 109.46986 * 270.00112 * 12 10 8 14 14 H 1.48496 * 109.47029 * 30.00128 * 12 10 8 15 15 H 1.48499 * 109.47352 * 149.99958 * 12 10 8 16 16 C 1.54483 * 104.18311 * 0.09959 * 5 4 2 17 17 O 1.44425 * 104.80472 * 23.91121 * 16 5 4 18 18 H 1.08993 * 109.47159 * 299.14378 * 1 2 3 19 19 H 1.08997 * 109.47146 * 59.14839 * 1 2 3 20 20 H 1.09002 * 109.46885 * 179.14156 * 1 2 3 21 21 H 1.09004 * 110.55673 * 98.53141 * 4 2 1 22 22 H 1.09001 * 110.61039 * 335.72875 * 4 2 1 23 23 H 0.97000 * 119.99825 * 23.08841 * 7 5 4 24 24 H 0.97005 * 119.99717 * 0.02562 * 11 10 8 25 25 H 1.08994 * 110.37230 * 142.74209 * 16 5 4 26 26 H 1.09002 * 110.36987 * 264.96796 * 16 5 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9103 1.0215 0.0000 4 6 2.0673 -0.7767 -1.2264 5 6 3.3178 -1.5056 -0.6859 6 1 3.1980 -2.5855 -0.7732 7 7 4.5182 -1.0641 -1.4004 8 6 5.6255 -1.8687 -1.4408 9 1 5.6141 -2.8285 -0.9458 10 6 6.7627 -1.4507 -2.1182 11 7 6.7766 -0.2812 -2.7220 12 14 8.2736 -2.5479 -2.1729 13 1 9.1516 -2.2393 -1.0157 14 1 7.8543 -3.9711 -2.1106 15 1 9.0160 -2.3055 -3.4360 16 6 3.3874 -1.0870 0.7995 17 8 2.0328 -0.7236 1.1443 18 1 -0.3633 0.5004 0.8975 19 1 -0.3633 0.5270 -0.8822 20 1 -0.3633 -1.0276 -0.0154 21 1 2.3422 -0.0880 -2.0253 22 1 1.3283 -1.4963 -1.5788 23 1 4.5285 -0.2020 -1.8448 24 1 5.9921 0.2887 -2.6933 25 1 3.7242 -1.9221 1.4137 26 1 4.0540 -0.2335 0.9223 RHF calculation, no. of doubly occupied orbitals= 32 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000402367939.mol2 26 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:14:58 Heat of formation + Delta-G solvation = -42.280819 kcal Electronic energy + Delta-G solvation = -10076.550894 eV Core-core repulsion = 8155.298729 eV Total energy + Delta-G solvation = -1921.252165 eV No. of doubly occupied orbitals = 32 Molecular weight (most abundant/longest-lived isotopes) = 171.100 amu Computer time = 0.11 seconds Orbital eigenvalues (eV) -38.98314 -34.71529 -31.87467 -31.37460 -27.95105 -25.41972 -23.46612 -21.15451 -20.18669 -17.52310 -15.86268 -15.26455 -14.88148 -14.26754 -13.76734 -13.42965 -12.72392 -12.36367 -11.89658 -11.53158 -11.08497 -10.84043 -10.64735 -10.56384 -10.14103 -10.02495 -9.37530 -9.21459 -8.91440 -7.10736 -6.15887 -3.16925 3.50005 3.54723 3.68700 4.32701 4.65288 5.08596 5.16424 5.37586 5.49678 5.55283 5.70055 5.76243 5.89895 6.02075 6.09960 6.22126 6.30785 6.41303 6.55862 6.73251 7.31315 7.77971 8.70045 9.15737 10.02114 10.16432 11.32341 Molecular weight = 171.10amu Principal moments of inertia in cm(-1) A = 0.103717 B = 0.010965 C = 0.010472 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 269.901168 B = 2552.901175 C = 2673.154609 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C 0.070 3.930 3 H 0.062 0.938 4 C -0.158 4.158 5 C 0.153 3.847 6 H 0.062 0.938 7 N -0.729 5.729 8 C -0.338 4.338 9 H 0.067 0.933 10 C -0.043 4.043 11 N -0.943 5.943 12 Si 1.084 2.916 13 H -0.294 1.294 14 H -0.294 1.294 15 H -0.287 1.287 16 C 0.023 3.977 17 O -0.386 6.386 18 H 0.057 0.943 19 H 0.066 0.934 20 H 0.061 0.939 21 H 0.075 0.925 22 H 0.071 0.929 23 H 0.368 0.632 24 H 0.255 0.745 25 H 0.081 0.919 26 H 0.059 0.941 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.046 -0.587 3.864 9.855 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C 0.012 3.988 3 H 0.080 0.920 4 C -0.197 4.197 5 C 0.042 3.958 6 H 0.080 0.920 7 N -0.372 5.372 8 C -0.468 4.468 9 H 0.085 0.915 10 C -0.241 4.241 11 N -0.588 5.588 12 Si 0.915 3.085 13 H -0.222 1.222 14 H -0.221 1.221 15 H -0.213 1.213 16 C -0.056 4.056 17 O -0.305 6.305 18 H 0.077 0.923 19 H 0.085 0.915 20 H 0.080 0.920 21 H 0.094 0.906 22 H 0.090 0.910 23 H 0.202 0.798 24 H 0.066 0.934 25 H 0.099 0.901 26 H 0.077 0.923 Dipole moment (debyes) X Y Z Total from point charges -7.581 -0.991 3.571 8.438 hybrid contribution -1.401 0.429 0.344 1.505 sum -8.982 -0.563 3.915 9.814 Atomic orbital electron populations 1.21784 0.93957 1.02487 1.01816 1.22935 0.94430 0.95446 0.85978 0.91996 1.23311 0.98518 0.99917 0.97954 1.21488 0.86446 0.97611 0.90220 0.91966 1.42479 1.11002 1.20847 1.62883 1.20121 0.93200 1.00797 1.32730 0.91534 1.25827 1.00852 1.00015 0.97377 1.70862 1.31712 1.10466 1.45717 0.83181 0.75095 0.73871 0.76402 1.22211 1.22070 1.21329 1.24379 0.82609 0.99834 0.98814 1.89019 1.28478 1.74699 1.38276 0.92342 0.91542 0.92026 0.90610 0.90992 0.79805 0.93369 0.90088 0.92274 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.82 9.53 37.16 0.35 -1.46 15 2 C 0.07 1.13 3.93 -25.78 -0.10 1.03 15 3 H 0.06 0.99 8.14 -51.93 -0.42 0.57 15 4 C -0.16 -2.75 6.41 -24.99 -0.16 -2.91 15 5 C 0.15 3.23 3.76 -66.36 -0.25 2.98 15 6 H 0.06 1.34 8.10 -51.93 -0.42 0.92 15 7 N -0.73 -18.52 5.14 -51.90 -0.27 -18.79 15 8 C -0.34 -9.55 9.97 -15.06 -0.15 -9.70 15 9 H 0.07 1.85 7.83 -52.49 -0.41 1.44 15 10 C -0.04 -1.25 5.50 -17.43 -0.10 -1.35 15 11 N -0.94 -29.19 13.70 55.49 0.76 -28.43 15 12 Si 1.08 25.95 29.92 -169.99 -5.09 20.86 15 13 H -0.29 -6.85 7.11 56.52 0.40 -6.45 15 14 H -0.29 -6.64 7.11 56.52 0.40 -6.24 15 15 H -0.29 -6.93 7.11 56.52 0.40 -6.53 15 16 C 0.02 0.46 7.35 37.94 0.28 0.74 15 17 O -0.39 -7.22 11.34 -35.23 -0.40 -7.62 15 18 H 0.06 0.69 8.14 -51.93 -0.42 0.27 15 19 H 0.07 0.72 8.14 -51.93 -0.42 0.29 15 20 H 0.06 0.77 8.12 -51.93 -0.42 0.35 15 21 H 0.08 1.33 7.68 -51.93 -0.40 0.93 15 22 H 0.07 1.13 7.87 -51.93 -0.41 0.72 15 23 H 0.37 9.56 6.37 -40.82 -0.26 9.30 15 24 H 0.26 7.77 6.77 -40.82 -0.28 7.49 15 25 H 0.08 1.55 8.14 -51.93 -0.42 1.13 15 26 H 0.06 1.25 8.06 -51.93 -0.42 0.83 15 LS Contribution 221.25 15.07 3.33 3.33 Total: -1.00 -31.02 221.25 -5.28 -36.30 By element: Atomic # 1 Polarization: 8.52 SS G_CDS: -3.50 Total: 5.02 kcal Atomic # 6 Polarization: -10.55 SS G_CDS: -0.12 Total: -10.68 kcal Atomic # 7 Polarization: -47.71 SS G_CDS: 0.49 Total: -47.22 kcal Atomic # 8 Polarization: -7.22 SS G_CDS: -0.40 Total: -7.62 kcal Atomic # 14 Polarization: 25.95 SS G_CDS: -5.09 Total: 20.86 kcal Total LS contribution 3.33 Total: 3.33 kcal Total: -31.02 -5.28 -36.30 kcal The number of atoms in the molecule is 26 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000402367939.mol2 26 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -5.981 kcal (2) G-P(sol) polarization free energy of solvation -31.015 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -36.996 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.285 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.300 kcal (6) G-S(sol) free energy of system = (1) + (5) -42.281 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.11 seconds