Wall clock time and date at job start Mon Mar 30 2020 02:14:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.09001 * 110.41918 * 2 1 4 4 C 1.54799 * 110.31237 * 237.65271 * 2 1 3 5 5 C 1.54505 * 103.91507 * 217.11734 * 4 2 1 6 6 H 1.09005 * 110.51105 * 118.81259 * 5 4 2 7 7 N 1.46504 * 110.51058 * 241.38905 * 5 4 2 8 8 C 1.36934 * 119.99567 * 203.09660 * 7 5 4 9 9 H 1.08001 * 120.00537 * 359.97438 * 8 7 5 10 10 C 1.38811 * 119.99798 * 179.97438 * 8 7 5 11 11 N 1.31624 * 120.00134 * 359.97438 * 10 8 7 12 12 Si 1.86803 * 120.00229 * 179.97438 * 10 8 7 13 13 H 1.48500 * 109.46986 * 270.00112 * 12 10 8 14 14 H 1.48496 * 109.47029 * 30.00128 * 12 10 8 15 15 H 1.48499 * 109.47352 * 149.99958 * 12 10 8 16 16 C 1.54483 * 104.18311 * 0.09959 * 5 4 2 17 17 O 1.44425 * 104.80472 * 23.91121 * 16 5 4 18 18 H 1.08993 * 109.47159 * 299.14378 * 1 2 3 19 19 H 1.08997 * 109.47146 * 59.14839 * 1 2 3 20 20 H 1.09002 * 109.46885 * 179.14156 * 1 2 3 21 21 H 1.09004 * 110.55673 * 98.53141 * 4 2 1 22 22 H 1.09001 * 110.61039 * 335.72875 * 4 2 1 23 23 H 0.97000 * 119.99825 * 23.08841 * 7 5 4 24 24 H 0.97005 * 119.99717 * 0.02562 * 11 10 8 25 25 H 1.08994 * 110.37230 * 142.74209 * 16 5 4 26 26 H 1.09002 * 110.36987 * 264.96796 * 16 5 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9103 1.0215 0.0000 4 6 2.0673 -0.7767 -1.2264 5 6 3.3178 -1.5056 -0.6859 6 1 3.1980 -2.5855 -0.7732 7 7 4.5182 -1.0641 -1.4004 8 6 5.6255 -1.8687 -1.4408 9 1 5.6141 -2.8285 -0.9458 10 6 6.7627 -1.4507 -2.1182 11 7 6.7766 -0.2812 -2.7220 12 14 8.2736 -2.5479 -2.1729 13 1 9.1516 -2.2393 -1.0157 14 1 7.8543 -3.9711 -2.1106 15 1 9.0160 -2.3055 -3.4360 16 6 3.3874 -1.0870 0.7995 17 8 2.0328 -0.7236 1.1443 18 1 -0.3633 0.5004 0.8975 19 1 -0.3633 0.5270 -0.8822 20 1 -0.3633 -1.0276 -0.0154 21 1 2.3422 -0.0880 -2.0253 22 1 1.3283 -1.4963 -1.5788 23 1 4.5285 -0.2020 -1.8448 24 1 5.9921 0.2887 -2.6933 25 1 3.7242 -1.9221 1.4137 26 1 4.0540 -0.2335 0.9223 RHF calculation, no. of doubly occupied orbitals= 32 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000402367939.mol2 26 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:14:58 Heat of formation + Delta-G solvation = -63.938604 kcal Electronic energy + Delta-G solvation = -10077.490046 eV Core-core repulsion = 8155.298729 eV Total energy + Delta-G solvation = -1922.191317 eV No. of doubly occupied orbitals = 32 Molecular weight (most abundant/longest-lived isotopes) = 171.100 amu Computer time = 0.12 seconds Orbital eigenvalues (eV) -40.49235 -36.66997 -33.59060 -32.88360 -29.75888 -26.81189 -25.60247 -22.60142 -21.74897 -19.60697 -17.45031 -16.89596 -16.41180 -16.02915 -15.66829 -15.13858 -14.16360 -13.70085 -13.14341 -13.01019 -12.77993 -12.67020 -12.38248 -12.06498 -11.86628 -11.68807 -11.26486 -11.03803 -10.75199 -9.20762 -8.44416 -5.40095 1.58418 1.68767 1.83125 2.67293 2.92750 3.34650 3.70297 3.74565 3.84565 4.08644 4.23116 4.36315 4.48083 4.68612 4.74608 4.84746 5.05608 5.06675 5.08992 5.25952 5.53171 5.87582 6.44604 7.02343 7.91673 8.02931 9.07336 Molecular weight = 171.10amu Principal moments of inertia in cm(-1) A = 0.103717 B = 0.010965 C = 0.010472 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 269.901168 B = 2552.901175 C = 2673.154609 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.137 4.137 2 C 0.066 3.934 3 H 0.062 0.938 4 C -0.150 4.150 5 C 0.143 3.857 6 H 0.058 0.942 7 N -0.741 5.741 8 C -0.339 4.339 9 H 0.069 0.931 10 C -0.101 4.101 11 N -0.974 5.974 12 Si 1.131 2.869 13 H -0.284 1.284 14 H -0.272 1.272 15 H -0.292 1.292 16 C 0.033 3.967 17 O -0.390 6.390 18 H 0.067 0.933 19 H 0.088 0.912 20 H 0.065 0.935 21 H 0.072 0.928 22 H 0.092 0.908 23 H 0.362 0.638 24 H 0.244 0.756 25 H 0.086 0.914 26 H 0.041 0.959 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.959 -1.219 4.246 10.895 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.194 4.194 2 C 0.008 3.992 3 H 0.080 0.920 4 C -0.188 4.188 5 C 0.033 3.967 6 H 0.076 0.924 7 N -0.384 5.384 8 C -0.470 4.470 9 H 0.087 0.913 10 C -0.292 4.292 11 N -0.622 5.622 12 Si 0.956 3.044 13 H -0.211 1.211 14 H -0.197 1.197 15 H -0.219 1.219 16 C -0.047 4.047 17 O -0.309 6.309 18 H 0.086 0.914 19 H 0.107 0.893 20 H 0.084 0.916 21 H 0.090 0.910 22 H 0.111 0.889 23 H 0.195 0.805 24 H 0.055 0.945 25 H 0.105 0.895 26 H 0.060 0.940 Dipole moment (debyes) X Y Z Total from point charges -8.549 -1.635 3.986 9.573 hybrid contribution -1.212 0.637 0.259 1.394 sum -9.761 -0.997 4.245 10.691 Atomic orbital electron populations 1.21784 0.90808 1.03339 1.03452 1.23168 0.96862 0.94827 0.84332 0.92027 1.23265 0.97147 1.00078 0.98352 1.21715 0.86463 0.97759 0.90740 0.92419 1.42630 1.11839 1.20416 1.63482 1.20461 0.94060 1.00951 1.31535 0.91317 1.27259 1.04028 1.00572 0.97347 1.70974 1.31584 1.11705 1.47891 0.82578 0.72094 0.73432 0.76320 1.21086 1.19713 1.21871 1.24090 0.83291 0.99281 0.97990 1.89024 1.27452 1.75013 1.39435 0.91387 0.89276 0.91583 0.90951 0.88933 0.80540 0.94516 0.89531 0.94026 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.02 9.53 71.98 0.69 -2.34 15 2 C 0.07 1.98 3.93 31.21 0.12 2.10 15 3 H 0.06 1.87 8.14 -2.39 -0.02 1.85 15 4 C -0.15 -4.96 6.41 31.72 0.20 -4.76 15 5 C 0.14 5.90 3.76 46.01 0.17 6.07 15 6 H 0.06 2.43 8.10 -2.38 -0.02 2.41 15 7 N -0.74 -37.76 5.14 -318.13 -1.64 -39.39 15 8 C -0.34 -19.12 9.97 84.03 0.84 -18.29 15 9 H 0.07 3.77 7.83 -2.91 -0.02 3.75 15 10 C -0.10 -5.85 5.50 84.86 0.47 -5.38 15 11 N -0.97 -61.00 13.70 21.65 0.30 -60.71 15 12 Si 1.13 51.81 29.92 68.60 2.05 53.86 15 13 H -0.28 -12.44 7.11 99.48 0.71 -11.73 15 14 H -0.27 -11.34 7.11 99.48 0.71 -10.63 15 15 H -0.29 -13.54 7.11 99.48 0.71 -12.84 15 16 C 0.03 1.29 7.35 72.49 0.53 1.83 15 17 O -0.39 -13.94 11.34 -148.98 -1.69 -15.63 15 18 H 0.07 1.39 8.14 -2.39 -0.02 1.37 15 19 H 0.09 1.59 8.14 -2.39 -0.02 1.57 15 20 H 0.07 1.42 8.12 -2.39 -0.02 1.40 15 21 H 0.07 2.45 7.68 -2.38 -0.02 2.44 15 22 H 0.09 2.67 7.87 -2.39 -0.02 2.65 15 23 H 0.36 19.10 6.37 -92.71 -0.59 18.51 15 24 H 0.24 15.23 6.77 -92.70 -0.63 14.61 15 25 H 0.09 3.24 8.14 -2.39 -0.02 3.22 15 26 H 0.04 1.77 8.06 -2.39 -0.02 1.75 15 Total: -1.00 -65.05 221.25 2.75 -62.30 By element: Atomic # 1 Polarization: 19.62 SS G_CDS: 0.71 Total: 20.32 kcal Atomic # 6 Polarization: -23.78 SS G_CDS: 3.02 Total: -20.76 kcal Atomic # 7 Polarization: -98.76 SS G_CDS: -1.34 Total: -100.10 kcal Atomic # 8 Polarization: -13.94 SS G_CDS: -1.69 Total: -15.63 kcal Atomic # 14 Polarization: 51.81 SS G_CDS: 2.05 Total: 53.86 kcal Total: -65.05 2.75 -62.30 kcal The number of atoms in the molecule is 26 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000402367939.mol2 26 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -1.636 kcal (2) G-P(sol) polarization free energy of solvation -65.054 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -66.690 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.751 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.303 kcal (6) G-S(sol) free energy of system = (1) + (5) -63.939 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.13 seconds