Wall clock time and date at job start Mon Mar 30 2020 02:14:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.09002 * 110.27386 * 2 1 4 4 C 1.54947 * 110.39468 * 237.85097 * 2 1 3 5 5 C 1.55299 * 100.94153 * 204.60030 * 4 2 1 6 6 H 1.09003 * 111.02289 * 275.86589 * 5 4 2 7 7 N 1.46497 * 110.84875 * 152.32612 * 5 4 2 8 8 C 1.36935 * 120.00298 * 160.71242 * 7 5 4 9 9 H 1.08003 * 119.99995 * 359.97438 * 8 7 5 10 10 C 1.38809 * 120.00267 * 179.97438 * 8 7 5 11 11 N 1.31617 * 120.00268 * 0.02562 * 10 8 7 12 12 Si 1.86800 * 120.00127 * 179.97438 * 10 8 7 13 13 H 1.48503 * 109.46845 * 60.00531 * 12 10 8 14 14 H 1.48503 * 109.47399 * 180.02562 * 12 10 8 15 15 H 1.48498 * 109.47295 * 300.00628 * 12 10 8 16 16 C 1.54383 * 102.25577 * 34.13263 * 5 4 2 17 17 O 1.43236 * 107.58653 * 338.64488 * 16 5 4 18 18 H 1.09002 * 109.47577 * 299.36567 * 1 2 3 19 19 H 1.09001 * 109.46856 * 59.36431 * 1 2 3 20 20 H 1.08997 * 109.47487 * 179.36151 * 1 2 3 21 21 H 1.09000 * 111.12032 * 86.67812 * 4 2 1 22 22 H 1.09004 * 111.12453 * 322.51950 * 4 2 1 23 23 H 0.96992 * 120.00013 * 340.71141 * 7 5 4 24 24 H 0.97000 * 119.99327 * 359.97438 * 11 10 8 25 25 H 1.09001 * 109.82821 * 98.15864 * 16 5 4 26 26 H 1.08999 * 109.83247 * 219.13599 * 16 5 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9077 1.0225 0.0000 4 6 2.0700 -0.7728 -1.2296 5 6 3.4722 -1.2002 -0.7168 6 1 4.2014 -0.4032 -0.8623 7 7 3.9135 -2.4336 -1.3725 8 6 5.2410 -2.7698 -1.3765 9 1 5.9627 -2.1253 -0.8966 10 6 5.6591 -3.9388 -1.9973 11 7 4.7798 -4.7239 -2.5825 12 14 7.4700 -4.3969 -2.0034 13 1 7.9485 -4.5424 -0.6051 14 1 7.6534 -5.6812 -2.7259 15 1 8.2480 -3.3309 -2.6843 16 6 3.2125 -1.4394 0.7861 17 8 2.0285 -0.7157 1.1413 18 1 -0.3634 0.5039 0.8956 19 1 -0.3633 0.5237 -0.8842 20 1 -0.3634 -1.0275 -0.0115 21 1 2.1516 -0.1202 -2.0989 22 1 1.4506 -1.6422 -1.4503 23 1 3.2655 -3.0122 -1.8037 24 1 3.8394 -4.4858 -2.5797 25 1 3.0650 -2.5035 0.9711 26 1 4.0577 -1.0750 1.3701 RHF calculation, no. of doubly occupied orbitals= 32 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000402367940.mol2 26 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:14:59 Heat of formation + Delta-G solvation = -43.101629 kcal Electronic energy + Delta-G solvation = -10063.542664 eV Core-core repulsion = 8142.254906 eV Total energy + Delta-G solvation = -1921.287758 eV No. of doubly occupied orbitals = 32 Molecular weight (most abundant/longest-lived isotopes) = 171.100 amu Computer time = 0.12 seconds Orbital eigenvalues (eV) -39.01567 -34.74934 -31.90932 -31.40728 -28.03581 -25.47413 -23.51520 -20.89936 -20.27242 -17.43654 -16.33126 -15.47956 -14.66111 -14.06315 -13.64655 -13.30192 -12.94528 -12.39145 -12.11927 -11.41546 -11.13398 -10.92667 -10.67690 -10.55604 -10.32953 -10.00158 -9.23353 -9.03139 -8.95969 -7.13263 -6.17000 -3.18445 3.49563 3.52971 3.70523 4.23579 4.63359 5.04687 5.10647 5.36133 5.44067 5.63417 5.68746 5.72968 5.81576 6.02220 6.07211 6.21858 6.29480 6.41781 6.53412 6.83338 7.49364 7.75576 8.68972 9.13793 10.00371 10.14544 11.31089 Molecular weight = 171.10amu Principal moments of inertia in cm(-1) A = 0.102551 B = 0.010909 C = 0.010400 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 272.970129 B = 2565.957066 C = 2691.672091 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C 0.076 3.924 3 H 0.064 0.936 4 C -0.159 4.159 5 C 0.155 3.845 6 H 0.063 0.937 7 N -0.726 5.726 8 C -0.340 4.340 9 H 0.066 0.934 10 C -0.042 4.042 11 N -0.941 5.941 12 Si 1.082 2.918 13 H -0.294 1.294 14 H -0.284 1.284 15 H -0.294 1.294 16 C 0.026 3.974 17 O -0.391 6.391 18 H 0.058 0.942 19 H 0.065 0.935 20 H 0.060 0.940 21 H 0.077 0.923 22 H 0.076 0.924 23 H 0.370 0.630 24 H 0.255 0.745 25 H 0.070 0.930 26 H 0.057 0.943 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.062 8.138 3.361 10.157 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C 0.018 3.982 3 H 0.082 0.918 4 C -0.198 4.198 5 C 0.044 3.956 6 H 0.081 0.919 7 N -0.369 5.369 8 C -0.470 4.470 9 H 0.084 0.916 10 C -0.240 4.240 11 N -0.585 5.585 12 Si 0.912 3.088 13 H -0.221 1.221 14 H -0.210 1.210 15 H -0.222 1.222 16 C -0.053 4.053 17 O -0.311 6.311 18 H 0.077 0.923 19 H 0.084 0.916 20 H 0.079 0.921 21 H 0.095 0.905 22 H 0.094 0.906 23 H 0.203 0.797 24 H 0.066 0.934 25 H 0.089 0.911 26 H 0.075 0.925 Dipole moment (debyes) X Y Z Total from point charges -3.859 7.110 3.135 8.676 hybrid contribution -1.149 1.007 0.273 1.553 sum -5.009 8.118 3.409 10.129 Atomic orbital electron populations 1.21868 0.94404 1.02562 1.01716 1.22799 0.94252 0.95324 0.85777 0.91813 1.23516 0.97918 1.00578 0.97778 1.21651 0.93221 0.90524 0.90204 0.91913 1.42337 1.06377 1.22406 1.65759 1.20075 0.84263 1.07845 1.34853 0.91562 1.25839 1.06903 0.93559 0.97652 1.70891 1.02493 1.39206 1.45951 0.83227 0.73601 0.76104 0.75891 1.22124 1.20951 1.22161 1.24117 0.85953 0.96368 0.98890 1.88327 1.43619 1.65230 1.33918 0.92325 0.91627 0.92089 0.90471 0.90574 0.79654 0.93352 0.91137 0.92504 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.90 9.63 37.16 0.36 -1.55 15 2 C 0.08 1.20 4.07 -25.70 -0.10 1.09 15 3 H 0.06 0.92 8.14 -51.93 -0.42 0.49 15 4 C -0.16 -2.74 6.19 -24.48 -0.15 -2.89 15 5 C 0.16 3.25 3.64 -65.99 -0.24 3.01 15 6 H 0.06 1.32 8.13 -51.93 -0.42 0.90 15 7 N -0.73 -18.51 5.18 -51.55 -0.27 -18.78 15 8 C -0.34 -9.61 9.98 -15.06 -0.15 -9.76 15 9 H 0.07 1.84 7.83 -52.48 -0.41 1.43 15 10 C -0.04 -1.21 5.50 -17.43 -0.10 -1.31 15 11 N -0.94 -29.15 13.70 55.49 0.76 -28.39 15 12 Si 1.08 25.85 29.92 -169.99 -5.09 20.76 15 13 H -0.29 -6.72 7.11 56.52 0.40 -6.31 15 14 H -0.28 -6.89 7.11 56.52 0.40 -6.49 15 15 H -0.29 -6.70 7.11 56.52 0.40 -6.30 15 16 C 0.03 0.53 7.56 37.88 0.29 0.82 15 17 O -0.39 -7.39 11.04 -35.23 -0.39 -7.78 15 18 H 0.06 0.70 8.14 -51.93 -0.42 0.28 15 19 H 0.06 0.70 8.14 -51.93 -0.42 0.28 15 20 H 0.06 0.81 8.14 -51.93 -0.42 0.39 15 21 H 0.08 1.20 8.14 -51.93 -0.42 0.78 15 22 H 0.08 1.33 7.91 -51.93 -0.41 0.92 15 23 H 0.37 9.65 6.54 -40.82 -0.27 9.39 15 24 H 0.26 7.79 6.77 -40.82 -0.28 7.51 15 25 H 0.07 1.55 8.02 -51.93 -0.42 1.13 15 26 H 0.06 1.11 8.14 -51.93 -0.42 0.69 15 LS Contribution 221.78 15.07 3.34 3.34 Total: -1.00 -31.07 221.78 -5.27 -36.34 By element: Atomic # 1 Polarization: 8.62 SS G_CDS: -3.54 Total: 5.08 kcal Atomic # 6 Polarization: -10.48 SS G_CDS: -0.10 Total: -10.58 kcal Atomic # 7 Polarization: -47.66 SS G_CDS: 0.49 Total: -47.17 kcal Atomic # 8 Polarization: -7.39 SS G_CDS: -0.39 Total: -7.78 kcal Atomic # 14 Polarization: 25.85 SS G_CDS: -5.09 Total: 20.76 kcal Total LS contribution 3.34 Total: 3.34 kcal Total: -31.07 -5.27 -36.34 kcal The number of atoms in the molecule is 26 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000402367940.mol2 26 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -6.758 kcal (2) G-P(sol) polarization free energy of solvation -31.069 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -37.828 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.274 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.343 kcal (6) G-S(sol) free energy of system = (1) + (5) -43.102 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.13 seconds