Wall clock time and date at job start Mon Mar 30 2020 02:14:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.09002 * 110.27386 * 2 1 4 4 C 1.54947 * 110.39468 * 237.85097 * 2 1 3 5 5 C 1.55299 * 100.94153 * 204.60030 * 4 2 1 6 6 H 1.09003 * 111.02289 * 275.86589 * 5 4 2 7 7 N 1.46497 * 110.84875 * 152.32612 * 5 4 2 8 8 C 1.36935 * 120.00298 * 160.71242 * 7 5 4 9 9 H 1.08003 * 119.99995 * 359.97438 * 8 7 5 10 10 C 1.38809 * 120.00267 * 179.97438 * 8 7 5 11 11 N 1.31617 * 120.00268 * 0.02562 * 10 8 7 12 12 Si 1.86800 * 120.00127 * 179.97438 * 10 8 7 13 13 H 1.48503 * 109.46845 * 60.00531 * 12 10 8 14 14 H 1.48503 * 109.47399 * 180.02562 * 12 10 8 15 15 H 1.48498 * 109.47295 * 300.00628 * 12 10 8 16 16 C 1.54383 * 102.25577 * 34.13263 * 5 4 2 17 17 O 1.43236 * 107.58653 * 338.64488 * 16 5 4 18 18 H 1.09002 * 109.47577 * 299.36567 * 1 2 3 19 19 H 1.09001 * 109.46856 * 59.36431 * 1 2 3 20 20 H 1.08997 * 109.47487 * 179.36151 * 1 2 3 21 21 H 1.09000 * 111.12032 * 86.67812 * 4 2 1 22 22 H 1.09004 * 111.12453 * 322.51950 * 4 2 1 23 23 H 0.96992 * 120.00013 * 340.71141 * 7 5 4 24 24 H 0.97000 * 119.99327 * 359.97438 * 11 10 8 25 25 H 1.09001 * 109.82821 * 98.15864 * 16 5 4 26 26 H 1.08999 * 109.83247 * 219.13599 * 16 5 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9077 1.0225 0.0000 4 6 2.0700 -0.7728 -1.2296 5 6 3.4722 -1.2002 -0.7168 6 1 4.2014 -0.4032 -0.8623 7 7 3.9135 -2.4336 -1.3725 8 6 5.2410 -2.7698 -1.3765 9 1 5.9627 -2.1253 -0.8966 10 6 5.6591 -3.9388 -1.9973 11 7 4.7798 -4.7239 -2.5825 12 14 7.4700 -4.3969 -2.0034 13 1 7.9485 -4.5424 -0.6051 14 1 7.6534 -5.6812 -2.7259 15 1 8.2480 -3.3309 -2.6843 16 6 3.2125 -1.4394 0.7861 17 8 2.0285 -0.7157 1.1413 18 1 -0.3634 0.5039 0.8956 19 1 -0.3633 0.5237 -0.8842 20 1 -0.3634 -1.0275 -0.0115 21 1 2.1516 -0.1202 -2.0989 22 1 1.4506 -1.6422 -1.4503 23 1 3.2655 -3.0122 -1.8037 24 1 3.8394 -4.4858 -2.5797 25 1 3.0650 -2.5035 0.9711 26 1 4.0577 -1.0750 1.3701 RHF calculation, no. of doubly occupied orbitals= 32 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000402367940.mol2 26 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:14:59 Heat of formation + Delta-G solvation = -64.869329 kcal Electronic energy + Delta-G solvation = -10064.486582 eV Core-core repulsion = 8142.254906 eV Total energy + Delta-G solvation = -1922.231676 eV No. of doubly occupied orbitals = 32 Molecular weight (most abundant/longest-lived isotopes) = 171.100 amu Computer time = 0.13 seconds Orbital eigenvalues (eV) -40.51151 -36.70066 -33.61588 -32.91907 -29.83547 -26.86543 -25.64979 -22.31948 -21.85849 -19.49997 -17.80092 -17.19505 -16.33551 -15.88403 -15.45532 -14.85967 -14.43018 -13.71868 -13.42993 -12.84939 -12.83089 -12.72165 -12.39879 -12.08614 -11.87937 -11.78093 -11.28145 -10.98924 -10.49477 -9.23392 -8.45347 -5.41527 1.58366 1.68111 1.84626 2.66305 2.84558 3.32696 3.58410 3.69784 3.96567 4.09154 4.20191 4.32246 4.46540 4.71192 4.75067 4.82791 5.00657 5.02966 5.20009 5.28820 5.54101 6.06035 6.43496 7.00520 7.89848 8.01291 9.06191 Molecular weight = 171.10amu Principal moments of inertia in cm(-1) A = 0.102551 B = 0.010909 C = 0.010400 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 272.970129 B = 2565.957066 C = 2691.672091 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C 0.073 3.927 3 H 0.085 0.915 4 C -0.150 4.150 5 C 0.144 3.856 6 H 0.064 0.936 7 N -0.739 5.739 8 C -0.341 4.341 9 H 0.070 0.930 10 C -0.100 4.100 11 N -0.973 5.973 12 Si 1.130 2.870 13 H -0.277 1.277 14 H -0.292 1.292 15 H -0.275 1.275 16 C 0.038 3.962 17 O -0.401 6.401 18 H 0.069 0.931 19 H 0.091 0.909 20 H 0.051 0.949 21 H 0.096 0.904 22 H 0.068 0.932 23 H 0.362 0.638 24 H 0.244 0.756 25 H 0.046 0.954 26 H 0.062 0.938 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.057 9.534 3.625 11.385 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C 0.016 3.984 3 H 0.103 0.897 4 C -0.188 4.188 5 C 0.035 3.965 6 H 0.082 0.918 7 N -0.382 5.382 8 C -0.472 4.472 9 H 0.088 0.912 10 C -0.291 4.291 11 N -0.620 5.620 12 Si 0.954 3.046 13 H -0.203 1.203 14 H -0.218 1.218 15 H -0.201 1.201 16 C -0.042 4.042 17 O -0.321 6.321 18 H 0.088 0.912 19 H 0.110 0.890 20 H 0.070 0.930 21 H 0.115 0.885 22 H 0.087 0.913 23 H 0.195 0.805 24 H 0.055 0.945 25 H 0.064 0.936 26 H 0.080 0.920 Dipole moment (debyes) X Y Z Total from point charges -3.881 8.563 3.428 10.007 hybrid contribution -1.223 0.661 0.225 1.408 sum -5.104 9.224 3.654 11.158 Atomic orbital electron populations 1.21878 0.91998 1.02623 1.03623 1.23106 0.96158 0.95522 0.83647 0.89707 1.23478 0.95242 1.00863 0.99253 1.21886 0.95366 0.88749 0.90548 0.91783 1.42494 1.05479 1.23872 1.66311 1.20430 0.85615 1.07597 1.33585 0.91221 1.27289 1.10302 0.93934 0.97607 1.71001 1.02309 1.40433 1.48255 0.82615 0.69407 0.75857 0.76762 1.20327 1.21848 1.20089 1.23794 0.86853 0.95292 0.98273 1.88321 1.42955 1.65399 1.35433 0.91174 0.88977 0.93005 0.88534 0.91286 0.80494 0.94548 0.93585 0.92006 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.25 9.63 71.98 0.69 -2.56 15 2 C 0.07 2.09 4.07 31.26 0.13 2.21 15 3 H 0.09 2.12 8.14 -2.39 -0.02 2.10 15 4 C -0.15 -4.88 6.19 32.05 0.20 -4.68 15 5 C 0.14 5.91 3.64 46.25 0.17 6.08 15 6 H 0.06 2.61 8.13 -2.39 -0.02 2.59 15 7 N -0.74 -37.84 5.18 -317.00 -1.64 -39.48 15 8 C -0.34 -19.27 9.98 84.03 0.84 -18.43 15 9 H 0.07 3.81 7.83 -2.91 -0.02 3.79 15 10 C -0.10 -5.81 5.50 84.86 0.47 -5.34 15 11 N -0.97 -61.10 13.70 21.65 0.30 -60.81 15 12 Si 1.13 51.65 29.92 68.60 2.05 53.70 15 13 H -0.28 -11.80 7.11 99.48 0.71 -11.10 15 14 H -0.29 -13.68 7.11 99.48 0.71 -12.97 15 15 H -0.27 -11.60 7.11 99.48 0.71 -10.90 15 16 C 0.04 1.49 7.56 72.45 0.55 2.04 15 17 O -0.40 -14.49 11.04 -148.98 -1.64 -16.13 15 18 H 0.07 1.44 8.14 -2.39 -0.02 1.42 15 19 H 0.09 1.61 8.14 -2.39 -0.02 1.59 15 20 H 0.05 1.27 8.14 -2.39 -0.02 1.25 15 21 H 0.10 2.76 8.14 -2.39 -0.02 2.74 15 22 H 0.07 2.35 7.91 -2.39 -0.02 2.33 15 23 H 0.36 19.30 6.54 -92.71 -0.61 18.70 15 24 H 0.24 15.29 6.77 -92.71 -0.63 14.66 15 25 H 0.05 2.04 8.02 -2.39 -0.02 2.02 15 26 H 0.06 2.37 8.14 -2.39 -0.02 2.35 15 Total: -1.00 -65.62 221.78 2.79 -62.83 By element: Atomic # 1 Polarization: 19.88 SS G_CDS: 0.69 Total: 20.57 kcal Atomic # 6 Polarization: -23.72 SS G_CDS: 3.04 Total: -20.68 kcal Atomic # 7 Polarization: -98.94 SS G_CDS: -1.35 Total: -100.29 kcal Atomic # 8 Polarization: -14.49 SS G_CDS: -1.64 Total: -16.13 kcal Atomic # 14 Polarization: 51.65 SS G_CDS: 2.05 Total: 53.70 kcal Total: -65.62 2.79 -62.83 kcal The number of atoms in the molecule is 26 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000402367940.mol2 26 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -2.039 kcal (2) G-P(sol) polarization free energy of solvation -65.621 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -67.660 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.791 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.831 kcal (6) G-S(sol) free energy of system = (1) + (5) -64.869 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.13 seconds