Wall clock time and date at job start Mon Mar 30 2020 01:43:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 N 1.46905 * 110.88481 * 2 1 4 4 C 1.55160 * 111.00561 * 123.87903 * 2 1 3 5 5 C 1.54321 * 102.94002 * 153.61266 * 4 2 1 6 6 N 1.47017 * 107.27345 * 337.81093 * 5 4 2 7 7 C 1.36947 * 125.64971 * 178.97612 * 6 5 4 8 8 H 1.07992 * 120.00215 * 179.97438 * 7 6 5 9 9 C 1.38816 * 119.99542 * 359.97221 * 7 6 5 10 10 N 1.31619 * 120.00363 * 0.02562 * 9 7 6 11 11 Si 1.86800 * 119.99573 * 179.97438 * 9 7 6 12 12 H 1.48496 * 109.47178 * 60.00139 * 11 9 7 13 13 H 1.48505 * 109.46933 * 180.02562 * 11 9 7 14 14 H 1.48502 * 109.47135 * 300.00058 * 11 9 7 15 15 C 1.47528 * 108.71691 * 358.94124 * 6 5 4 16 16 H 1.09001 * 109.47298 * 59.29962 * 1 2 3 17 17 H 1.09003 * 109.46917 * 179.30163 * 1 2 3 18 18 H 1.09003 * 109.47186 * 299.30084 * 1 2 3 19 19 H 1.00901 * 110.99869 * 300.70399 * 3 2 1 20 20 H 1.00896 * 110.99543 * 64.65521 * 3 2 1 21 21 H 1.08999 * 110.72071 * 271.98185 * 4 2 1 22 22 H 1.09001 * 110.71445 * 35.07824 * 4 2 1 23 23 H 1.09008 * 109.87948 * 97.22973 * 5 4 2 24 24 H 1.09004 * 109.88465 * 218.38767 * 5 4 2 25 25 H 0.96997 * 119.99946 * 180.02562 * 10 9 7 26 26 H 1.09003 * 110.36803 * 265.31102 * 15 6 5 27 27 H 1.08999 * 110.41160 * 142.95727 * 15 6 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0537 1.3725 0.0000 4 6 2.0862 -0.8074 1.2026 5 6 3.4678 -1.2730 0.6968 6 7 3.4280 -1.2421 -0.7725 7 6 4.4654 -1.5653 -1.6060 8 1 4.3350 -1.5107 -2.6767 9 6 5.6845 -1.9632 -1.0747 10 7 5.8433 -2.0302 0.2302 11 14 7.0994 -2.4047 -2.2117 12 1 7.4414 -1.2313 -3.0550 13 1 8.2818 -2.7946 -1.4021 14 1 6.6995 -3.5399 -3.0816 15 6 2.0852 -0.8061 -1.2006 16 1 -0.3634 0.5247 -0.8836 17 1 -0.3633 -1.0276 -0.0125 18 1 -0.3634 0.5029 0.8962 19 1 1.7332 1.8818 -0.8099 20 1 1.8058 1.8540 0.8513 21 1 2.1915 -0.1693 2.0799 22 1 1.4455 -1.6613 1.4231 23 1 4.2426 -0.5981 1.0610 24 1 3.6659 -2.2881 1.0411 25 1 6.6954 -2.3078 0.6014 26 1 1.4522 -1.6702 -1.4026 27 1 2.1553 -0.1714 -2.0839 RHF calculation, no. of doubly occupied orbitals= 32 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000405908102.mol2 27 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:43:11 Heat of formation + Delta-G solvation = -1.693226 kcal Electronic energy + Delta-G solvation = -10267.799564 eV Core-core repulsion = 8446.026071 eV Total energy + Delta-G solvation = -1821.773492 eV No. of doubly occupied orbitals = 32 Molecular weight (most abundant/longest-lived isotopes) = 170.111 amu Computer time = 0.14 seconds Orbital eigenvalues (eV) -39.66635 -35.60916 -32.97659 -30.66410 -29.72758 -27.46204 -25.24430 -22.04448 -20.35477 -18.74283 -16.85352 -16.41118 -16.34320 -15.61112 -14.72582 -13.85576 -13.82309 -13.60144 -13.47540 -13.11144 -12.71996 -12.68727 -12.03805 -11.84887 -11.78787 -11.55625 -11.32456 -10.64649 -9.38528 -8.80292 -7.79606 -5.13388 1.45340 1.50110 1.56150 2.53147 3.37016 3.66715 3.71879 3.85406 4.18659 4.29785 4.67818 4.71664 4.84105 4.95507 5.04821 5.10650 5.19278 5.34465 5.47053 5.73279 5.84891 6.25322 6.51017 6.80355 7.15937 7.84958 8.50763 9.30984 Molecular weight = 170.11amu Principal moments of inertia in cm(-1) A = 0.086845 B = 0.014002 C = 0.013257 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 322.334673 B = 1999.255315 C = 2111.634206 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.158 4.158 2 C 0.107 3.893 3 N -0.838 5.838 4 C -0.122 4.122 5 C 0.197 3.803 6 N -0.619 5.619 7 C -0.240 4.240 8 H 0.079 0.921 9 C -0.073 4.073 10 N -0.954 5.954 11 Si 0.981 3.019 12 H -0.278 1.278 13 H -0.294 1.294 14 H -0.276 1.276 15 C 0.141 3.859 16 H 0.065 0.935 17 H 0.063 0.937 18 H 0.071 0.929 19 H 0.345 0.655 20 H 0.346 0.654 21 H 0.075 0.925 22 H 0.074 0.926 23 H 0.004 0.996 24 H -0.003 1.003 25 H 0.245 0.755 26 H 0.026 0.974 27 H 0.036 0.964 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.138 4.469 -0.001 11.079 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.217 4.217 2 C 0.013 3.987 3 N -0.370 5.370 4 C -0.161 4.161 5 C 0.072 3.928 6 N -0.345 5.345 7 C -0.369 4.369 8 H 0.097 0.903 9 C -0.265 4.265 10 N -0.603 5.603 11 Si 0.809 3.191 12 H -0.204 1.204 13 H -0.220 1.220 14 H -0.202 1.202 15 C 0.015 3.985 16 H 0.084 0.916 17 H 0.082 0.918 18 H 0.090 0.910 19 H 0.159 0.841 20 H 0.160 0.840 21 H 0.093 0.907 22 H 0.093 0.907 23 H 0.023 0.977 24 H 0.015 0.985 25 H 0.054 0.946 26 H 0.044 0.956 27 H 0.054 0.946 Dipole moment (debyes) X Y Z Total from point charges -9.209 4.062 -0.030 10.066 hybrid contribution 0.156 -0.094 -0.341 0.387 sum -9.053 3.968 -0.371 9.891 Atomic orbital electron populations 1.22322 0.93792 1.02995 1.02637 1.21872 0.92639 0.89160 0.95007 1.58483 1.68272 1.02426 1.07847 1.22820 0.96613 0.99242 0.97406 1.20721 0.93055 0.95854 0.83197 1.44643 1.08925 1.78518 1.02377 1.19441 0.90781 1.37048 0.89641 0.90308 1.25691 1.00479 1.02780 0.97568 1.70219 1.24146 1.54966 1.10974 0.85113 0.78324 0.78166 0.77488 1.20400 1.21989 1.20188 1.21795 0.85997 0.94906 0.95803 0.91562 0.91834 0.91009 0.84134 0.83975 0.90652 0.90728 0.97725 0.98503 0.94625 0.95618 0.94603 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -3.80 8.94 71.98 0.64 -3.15 15 2 C 0.11 3.62 1.11 4.92 0.01 3.62 15 3 N -0.84 -26.92 9.05 -146.11 -1.32 -28.24 15 4 C -0.12 -4.69 6.11 31.78 0.19 -4.49 15 5 C 0.20 10.47 5.36 86.73 0.47 10.94 15 6 N -0.62 -33.96 3.40 -691.73 -2.35 -36.31 15 7 C -0.24 -14.30 10.28 84.03 0.86 -13.44 15 8 H 0.08 4.47 7.83 -2.91 -0.02 4.45 15 9 C -0.07 -4.39 5.49 84.86 0.47 -3.92 15 10 N -0.95 -60.70 10.31 21.65 0.22 -60.48 15 11 Si 0.98 47.97 29.55 68.60 2.03 50.00 15 12 H -0.28 -13.10 7.11 99.48 0.71 -12.39 15 13 H -0.29 -14.36 7.11 99.48 0.71 -13.65 15 14 H -0.28 -12.89 7.11 99.48 0.71 -12.18 15 15 C 0.14 6.02 6.41 86.83 0.56 6.58 15 16 H 0.07 1.41 8.14 -2.39 -0.02 1.39 15 17 H 0.06 1.51 8.13 -2.39 -0.02 1.49 15 18 H 0.07 1.45 8.14 -2.39 -0.02 1.43 15 19 H 0.34 9.60 9.05 -89.69 -0.81 8.78 15 20 H 0.35 9.22 9.06 -89.70 -0.81 8.41 15 21 H 0.07 2.61 8.14 -2.39 -0.02 2.59 15 22 H 0.07 2.59 8.04 -2.39 -0.02 2.57 15 23 H 0.00 0.27 7.38 -2.38 -0.02 0.25 15 24 H 0.00 -0.19 7.51 -2.39 -0.02 -0.21 15 25 H 0.24 15.11 8.31 -92.71 -0.77 14.34 15 26 H 0.03 1.08 8.03 -2.39 -0.02 1.06 15 27 H 0.04 1.51 8.14 -2.39 -0.02 1.50 15 Total: -1.00 -70.37 223.23 1.30 -69.06 By element: Atomic # 1 Polarization: 10.31 SS G_CDS: -0.47 Total: 9.84 kcal Atomic # 6 Polarization: -7.06 SS G_CDS: 3.19 Total: -3.87 kcal Atomic # 7 Polarization: -121.58 SS G_CDS: -3.45 Total: -125.03 kcal Atomic # 14 Polarization: 47.97 SS G_CDS: 2.03 Total: 50.00 kcal Total: -70.37 1.30 -69.06 kcal The number of atoms in the molecule is 27 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000405908102.mol2 27 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 67.369 kcal (2) G-P(sol) polarization free energy of solvation -70.367 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -2.998 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.305 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.063 kcal (6) G-S(sol) free energy of system = (1) + (5) -1.693 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.14 seconds