Wall clock time and date at job start Mon Mar 30 2020 01:43:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 N 1.46902 * 110.64138 * 2 1 4 4 C 1.55150 * 110.87731 * 236.74993 * 2 1 3 5 5 C 1.55124 * 101.48860 * 205.89971 * 4 2 1 6 6 N 1.47428 * 104.71992 * 37.29733 * 5 4 2 7 7 C 1.36941 * 125.64344 * 155.82203 * 6 5 4 8 8 H 1.08003 * 119.99654 * 190.44130 * 7 6 5 9 9 C 1.38811 * 120.00604 * 10.43256 * 7 6 5 10 10 N 1.31621 * 119.99472 * 9.07328 * 9 7 6 11 11 Si 1.86802 * 120.00075 * 189.06828 * 9 7 6 12 12 H 1.48497 * 109.46995 * 84.99393 * 11 9 7 13 13 H 1.48497 * 109.47222 * 324.99067 * 11 9 7 14 14 H 1.48502 * 109.46692 * 204.99429 * 11 9 7 15 15 C 1.47018 * 108.70261 * 335.55012 * 6 5 4 16 16 H 1.08995 * 109.47403 * 298.31483 * 1 2 3 17 17 H 1.09002 * 109.46934 * 58.31596 * 1 2 3 18 18 H 1.09000 * 109.47133 * 178.30872 * 1 2 3 19 19 H 1.00907 * 110.99717 * 61.68715 * 3 2 1 20 20 H 1.00899 * 110.99915 * 185.63378 * 3 2 1 21 21 H 1.09006 * 111.00325 * 324.13841 * 4 2 1 22 22 H 1.09003 * 111.00510 * 87.95060 * 4 2 1 23 23 H 1.08991 * 110.50089 * 278.45300 * 5 4 2 24 24 H 1.08999 * 110.34333 * 156.05813 * 5 4 2 25 25 H 0.96997 * 119.99379 * 180.02562 * 10 9 7 26 26 H 1.09003 * 109.87991 * 120.71198 * 15 6 5 27 27 H 1.09003 * 109.88107 * 241.71562 * 15 6 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0479 1.3747 0.0000 4 6 2.0829 -0.7948 -1.2123 5 6 3.4707 -1.2412 -0.6821 6 7 3.2470 -1.5461 0.7428 7 6 4.0077 -2.3900 1.5073 8 1 3.6693 -2.6800 2.4911 9 6 5.2136 -2.8728 1.0179 10 7 5.7133 -2.3854 -0.0980 11 14 6.1272 -4.2141 1.9430 12 1 5.5961 -5.5416 1.5422 13 1 5.9373 -4.0254 3.4037 14 1 7.5745 -4.1413 1.6185 15 6 2.0759 -0.7891 1.2087 16 1 -0.3634 0.4874 0.9046 17 1 -0.3633 0.5398 -0.8745 18 1 -0.3633 -1.0272 -0.0303 19 1 1.7572 1.8706 0.8294 20 1 3.0526 1.3826 -0.0925 21 1 1.4516 -1.6547 -1.4365 22 1 2.1881 -0.1516 -2.0861 23 1 4.1970 -0.4355 -0.7882 24 1 3.8103 -2.1313 -1.2117 25 1 6.5557 -2.7231 -0.4401 26 1 1.3140 -1.4754 1.5782 27 1 2.3706 -0.1011 2.0011 RHF calculation, no. of doubly occupied orbitals= 32 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000405908103.mol2 27 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:43:12 Heat of formation + Delta-G solvation = -5.063239 kcal Electronic energy + Delta-G solvation = -10269.415950 eV Core-core repulsion = 8447.496322 eV Total energy + Delta-G solvation = -1821.919627 eV No. of doubly occupied orbitals = 32 Molecular weight (most abundant/longest-lived isotopes) = 170.111 amu Computer time = 0.14 seconds Orbital eigenvalues (eV) -39.85640 -35.58959 -32.91121 -30.66016 -29.96993 -27.50502 -25.19917 -22.16691 -20.30339 -18.79225 -17.07262 -16.58198 -16.31168 -15.44374 -14.70477 -14.35229 -13.95143 -13.58379 -13.20452 -12.91746 -12.75339 -12.71689 -12.13617 -12.01784 -11.82842 -11.73089 -11.31388 -10.70795 -9.64180 -8.88318 -7.91625 -5.27393 1.43281 1.46060 1.54134 2.46609 3.26571 3.57705 3.73836 3.84956 4.09070 4.25881 4.64646 4.66759 4.81100 4.97941 5.06387 5.10370 5.17163 5.40371 5.41980 5.56637 5.70348 6.15337 6.26608 6.60682 7.04605 7.72625 8.39615 9.19788 Molecular weight = 170.11amu Principal moments of inertia in cm(-1) A = 0.088632 B = 0.013794 C = 0.013088 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 315.836552 B = 2029.399854 C = 2138.924430 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.119 4.119 2 C 0.109 3.891 3 N -0.826 5.826 4 C -0.124 4.124 5 C 0.178 3.822 6 N -0.624 5.624 7 C -0.251 4.251 8 H 0.075 0.925 9 C -0.064 4.064 10 N -0.947 5.947 11 Si 0.980 3.020 12 H -0.283 1.283 13 H -0.270 1.270 14 H -0.292 1.292 15 C 0.103 3.897 16 H 0.064 0.936 17 H 0.072 0.928 18 H 0.061 0.939 19 H 0.345 0.655 20 H 0.337 0.663 21 H 0.071 0.929 22 H 0.082 0.918 23 H 0.000 1.000 24 H 0.030 0.970 25 H 0.249 0.751 26 H 0.028 0.972 27 H 0.013 0.987 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.073 3.839 0.241 8.943 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.177 4.177 2 C 0.016 3.984 3 N -0.355 5.355 4 C -0.163 4.163 5 C 0.053 3.947 6 N -0.350 5.350 7 C -0.380 4.380 8 H 0.093 0.907 9 C -0.257 4.257 10 N -0.595 5.595 11 Si 0.808 3.192 12 H -0.210 1.210 13 H -0.195 1.195 14 H -0.218 1.218 15 C -0.024 4.024 16 H 0.083 0.917 17 H 0.091 0.909 18 H 0.080 0.920 19 H 0.158 0.842 20 H 0.149 0.851 21 H 0.090 0.910 22 H 0.101 0.899 23 H 0.018 0.982 24 H 0.048 0.952 25 H 0.058 0.942 26 H 0.046 0.954 27 H 0.031 0.969 Dipole moment (debyes) X Y Z Total from point charges -8.339 3.851 -0.422 9.195 hybrid contribution 1.501 -1.035 1.322 2.252 sum -6.838 2.816 0.900 7.449 Atomic orbital electron populations 1.21603 0.91071 1.02151 1.02884 1.21771 0.96051 0.87614 0.93014 1.59005 1.16921 1.13751 1.45832 1.22998 0.96730 0.99143 0.97393 1.21241 0.92683 0.96755 0.84064 1.44776 1.31475 1.51031 1.07745 1.19399 0.99730 1.19648 0.99230 0.90674 1.25712 0.97846 1.02888 0.99268 1.70161 1.20391 1.45038 1.23884 0.85074 0.77077 0.78848 0.78187 1.21011 1.19494 1.21837 1.22422 0.89423 0.94046 0.96481 0.91668 0.90872 0.91995 0.84181 0.85091 0.91007 0.89924 0.98181 0.95173 0.94181 0.95398 0.96859 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -3.16 8.79 71.98 0.63 -2.53 15 2 C 0.11 3.74 1.16 4.71 0.01 3.75 15 3 N -0.83 -26.07 9.00 -146.91 -1.32 -27.39 15 4 C -0.12 -4.74 6.19 32.06 0.20 -4.55 15 5 C 0.18 8.97 5.10 86.93 0.44 9.42 15 6 N -0.62 -33.07 3.39 -691.56 -2.35 -35.41 15 7 C -0.25 -14.53 10.24 84.03 0.86 -13.67 15 8 H 0.08 4.20 7.85 -2.91 -0.02 4.18 15 9 C -0.06 -3.69 5.40 84.86 0.46 -3.23 15 10 N -0.95 -57.84 10.68 21.65 0.23 -57.60 15 11 Si 0.98 46.38 29.56 68.60 2.03 48.41 15 12 H -0.28 -13.12 7.11 99.48 0.71 -12.41 15 13 H -0.27 -12.14 7.11 99.48 0.71 -11.43 15 14 H -0.29 -13.79 7.11 99.48 0.71 -13.08 15 15 C 0.10 4.38 6.57 86.73 0.57 4.95 15 16 H 0.06 1.52 8.14 -2.39 -0.02 1.51 15 17 H 0.07 1.76 8.14 -2.39 -0.02 1.75 15 18 H 0.06 1.61 8.13 -2.39 -0.02 1.59 15 19 H 0.34 9.42 9.03 -89.69 -0.81 8.61 15 20 H 0.34 11.97 8.25 -89.69 -0.74 11.23 15 21 H 0.07 2.63 8.05 -2.38 -0.02 2.61 15 22 H 0.08 2.90 8.14 -2.39 -0.02 2.88 15 23 H 0.00 0.01 7.68 -2.39 -0.02 -0.01 15 24 H 0.03 1.71 6.95 -2.39 -0.02 1.70 15 25 H 0.25 14.73 8.31 -92.71 -0.77 13.96 15 26 H 0.03 1.16 7.82 -2.39 -0.02 1.14 15 27 H 0.01 0.57 8.03 -2.39 -0.02 0.55 15 Total: -1.00 -64.45 221.94 1.37 -63.08 By element: Atomic # 1 Polarization: 15.16 SS G_CDS: -0.39 Total: 14.77 kcal Atomic # 6 Polarization: -9.02 SS G_CDS: 3.17 Total: -5.85 kcal Atomic # 7 Polarization: -116.97 SS G_CDS: -3.44 Total: -120.41 kcal Atomic # 14 Polarization: 46.38 SS G_CDS: 2.03 Total: 48.41 kcal Total: -64.45 1.37 -63.08 kcal The number of atoms in the molecule is 27 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000405908103.mol2 27 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 58.021 kcal (2) G-P(sol) polarization free energy of solvation -64.451 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -6.430 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.366 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.085 kcal (6) G-S(sol) free energy of system = (1) + (5) -5.063 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.14 seconds