Wall clock time and date at job start Mon Mar 30 2020 02:00:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31624 * 1 3 3 Si 1.86803 * 119.99763 * 2 1 4 4 H 1.48498 * 109.47017 * 269.99564 * 3 2 1 5 5 H 1.48492 * 109.47131 * 30.00139 * 3 2 1 6 6 H 1.48501 * 109.46802 * 149.99892 * 3 2 1 7 7 C 1.38812 * 120.00274 * 179.97438 * 2 1 3 8 8 H 1.07993 * 120.00187 * 180.02562 * 7 2 1 9 9 N 1.36944 * 119.99770 * 0.02562 * 7 2 1 10 10 C 1.46497 * 119.99791 * 179.97438 * 9 7 2 11 11 C 1.53786 * 113.61643 * 105.85866 * 10 9 7 12 12 C 1.54049 * 86.98426 * 140.01639 * 11 10 9 13 13 C 1.53002 * 113.62024 * 220.02020 * 12 11 10 14 14 O 1.42898 * 109.47362 * 272.49894 * 13 12 11 15 15 C 1.53781 * 113.61305 * 203.46713 * 10 9 7 16 16 H 0.96996 * 120.00281 * 0.02562 * 1 2 3 17 17 H 0.96995 * 120.00062 * 359.97438 * 9 7 2 18 18 H 1.09002 * 112.84935 * 334.66194 * 10 9 7 19 19 H 1.08992 * 113.61675 * 254.61383 * 11 10 9 20 20 H 1.09000 * 113.60973 * 25.51671 * 11 10 9 21 21 H 1.08996 * 113.68970 * 89.12734 * 12 11 10 22 22 H 1.08997 * 109.47064 * 32.50151 * 13 12 11 23 23 H 1.09006 * 109.47182 * 152.49563 * 13 12 11 24 24 H 0.96702 * 114.00000 * 180.02562 * 14 13 12 25 25 H 1.08999 * 113.61567 * 334.48111 * 15 10 9 26 26 H 1.08998 * 113.61196 * 105.38466 * 15 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6178 0.0000 4 1 2.4977 2.0464 -1.4001 5 1 1.4476 2.6526 0.7000 6 1 3.5477 1.4402 0.7001 7 6 2.0104 -1.2021 0.0005 8 1 3.0903 -1.2021 0.0010 9 7 1.3256 -2.3881 0.0005 10 6 2.0582 -3.6568 0.0005 11 6 2.0328 -4.3828 1.3560 12 6 1.8625 -5.6908 0.5602 13 6 0.8750 -6.6712 1.1963 14 8 1.5629 -7.4958 2.1390 15 6 1.2469 -4.8365 -0.5606 16 1 -0.4850 0.8400 -0.0004 17 1 0.3557 -2.3881 0.0005 18 1 3.0560 -3.5693 -0.4293 19 1 2.9742 -4.3216 1.9018 20 1 1.1688 -4.1300 1.9705 21 1 2.8060 -6.1607 0.2828 22 1 0.0882 -6.1151 1.7060 23 1 0.4334 -7.2968 0.4205 24 1 0.9971 -8.1432 2.5817 25 1 0.1684 -4.7076 -0.4690 26 1 1.5543 -5.1413 -1.5609 RHF calculation, no. of doubly occupied orbitals= 32 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000575456948.mol2 26 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:00:36 Heat of formation + Delta-G solvation = -27.252965 kcal Electronic energy + Delta-G solvation = -9808.957262 eV Core-core repulsion = 7888.356754 eV Total energy + Delta-G solvation = -1920.600508 eV No. of doubly occupied orbitals = 32 Molecular weight (most abundant/longest-lived isotopes) = 171.100 amu Computer time = 0.12 seconds Orbital eigenvalues (eV) -38.64582 -36.11233 -33.38833 -30.26246 -27.09258 -24.98314 -23.74819 -20.79975 -19.06236 -17.23565 -16.88997 -15.27892 -14.83993 -14.13987 -13.96494 -13.11694 -12.76301 -11.85577 -11.77796 -11.27012 -11.04650 -10.82940 -10.44620 -10.13852 -10.09987 -9.93939 -9.64693 -9.35372 -8.83048 -6.92496 -5.75771 -3.04104 3.44917 3.50040 3.51909 4.36890 4.62485 5.07242 5.24426 5.43332 5.50421 5.69205 5.75426 5.86737 5.99837 6.14421 6.35401 6.41769 6.46543 6.72125 6.92559 7.19410 7.72419 7.73596 8.43269 9.54138 10.12794 10.47493 11.46969 Molecular weight = 171.10amu Principal moments of inertia in cm(-1) A = 0.108897 B = 0.009420 C = 0.009279 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 257.062308 B = 2971.651429 C = 3016.898683 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.935 5.935 2 C -0.014 4.014 3 Si 0.908 3.092 4 H -0.290 1.290 5 H -0.291 1.291 6 H -0.281 1.281 7 C -0.242 4.242 8 H 0.071 0.929 9 N -0.714 5.714 10 C 0.164 3.836 11 C -0.157 4.157 12 C -0.114 4.114 13 C 0.087 3.913 14 O -0.575 6.575 15 C -0.144 4.144 16 H 0.255 0.745 17 H 0.384 0.616 18 H 0.075 0.925 19 H 0.054 0.946 20 H 0.075 0.925 21 H 0.088 0.912 22 H 0.046 0.954 23 H 0.040 0.960 24 H 0.372 0.628 25 H 0.078 0.922 26 H 0.061 0.939 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.296 -11.144 1.277 11.292 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.583 5.583 2 C -0.210 4.210 3 Si 0.739 3.261 4 H -0.217 1.217 5 H -0.218 1.218 6 H -0.207 1.207 7 C -0.373 4.373 8 H 0.089 0.911 9 N -0.352 5.352 10 C 0.052 3.948 11 C -0.198 4.198 12 C -0.133 4.133 13 C 0.010 3.990 14 O -0.380 6.380 15 C -0.184 4.184 16 H 0.065 0.935 17 H 0.218 0.782 18 H 0.093 0.907 19 H 0.073 0.927 20 H 0.094 0.906 21 H 0.107 0.893 22 H 0.064 0.936 23 H 0.058 0.942 24 H 0.217 0.783 25 H 0.096 0.904 26 H 0.080 0.920 Dipole moment (debyes) X Y Z Total from point charges 1.921 -10.580 1.063 10.806 hybrid contribution -0.433 0.544 0.217 0.729 sum 1.487 -10.036 1.280 10.226 Atomic orbital electron populations 1.69662 1.05158 1.25690 1.57793 1.24760 0.95522 0.97760 1.02960 0.86176 0.78689 0.83768 0.77505 1.21713 1.21781 1.20707 1.19335 0.91136 0.84266 1.42574 0.91061 1.42412 1.05710 0.99922 1.87168 1.21547 0.95216 0.84925 0.93083 1.23918 1.01294 0.94802 0.99817 1.22421 0.98814 0.93977 0.98070 1.22262 0.94438 0.91892 0.90440 1.86515 1.40183 1.52321 1.58956 1.23446 1.00653 0.97379 0.96875 0.93501 0.78157 0.90714 0.92727 0.90632 0.89350 0.93570 0.94217 0.78254 0.90364 0.92045 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -28.62 13.06 55.49 0.72 -27.90 15 2 C -0.01 -0.42 5.50 -17.43 -0.10 -0.51 15 3 Si 0.91 22.66 29.55 -169.99 -5.02 17.64 15 4 H -0.29 -7.18 7.11 56.52 0.40 -6.78 15 5 H -0.29 -7.32 7.11 56.52 0.40 -6.92 15 6 H -0.28 -6.84 7.11 56.52 0.40 -6.44 15 7 C -0.24 -6.88 9.97 -15.06 -0.15 -7.03 15 8 H 0.07 1.96 7.83 -52.49 -0.41 1.55 15 9 N -0.71 -18.48 5.41 -52.64 -0.28 -18.76 15 10 C 0.16 3.41 4.47 -67.12 -0.30 3.11 15 11 C -0.16 -2.97 7.45 -25.77 -0.19 -3.16 15 12 C -0.11 -1.82 4.02 -89.67 -0.36 -2.18 15 13 C 0.09 1.20 6.89 37.16 0.26 1.46 15 14 O -0.58 -7.80 13.66 -35.23 -0.48 -8.28 15 15 C -0.14 -2.47 7.39 -25.92 -0.19 -2.66 15 16 H 0.26 7.54 8.31 -40.82 -0.34 7.20 15 17 H 0.38 10.46 7.91 -40.82 -0.32 10.14 15 18 H 0.07 1.55 8.11 -51.93 -0.42 1.12 15 19 H 0.05 1.02 8.14 -51.93 -0.42 0.60 15 20 H 0.08 1.50 7.90 -51.93 -0.41 1.09 15 21 H 0.09 1.38 8.14 -51.93 -0.42 0.96 15 22 H 0.05 0.64 7.85 -51.93 -0.41 0.23 15 23 H 0.04 0.48 8.14 -51.93 -0.42 0.06 15 24 H 0.37 3.11 9.12 45.56 0.42 3.52 15 25 H 0.08 1.35 8.07 -51.93 -0.42 0.93 15 26 H 0.06 0.97 8.14 -51.93 -0.42 0.54 15 LS Contribution 226.34 15.07 3.41 3.41 Total: -1.00 -31.57 226.34 -5.49 -37.06 By element: Atomic # 1 Polarization: 10.61 SS G_CDS: -2.80 Total: 7.81 kcal Atomic # 6 Polarization: -9.94 SS G_CDS: -1.03 Total: -10.97 kcal Atomic # 7 Polarization: -47.10 SS G_CDS: 0.44 Total: -46.66 kcal Atomic # 8 Polarization: -7.80 SS G_CDS: -0.48 Total: -8.28 kcal Atomic # 14 Polarization: 22.66 SS G_CDS: -5.02 Total: 17.64 kcal Total LS contribution 3.41 Total: 3.41 kcal Total: -31.57 -5.49 -37.06 kcal The number of atoms in the molecule is 26 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000575456948.mol2 26 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 9.802 kcal (2) G-P(sol) polarization free energy of solvation -31.566 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -21.763 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.490 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.055 kcal (6) G-S(sol) free energy of system = (1) + (5) -27.253 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.12 seconds