Wall clock time and date at job start Mon Mar 30 2020 02:00:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31624 * 1 3 3 Si 1.86803 * 119.99763 * 2 1 4 4 H 1.48498 * 109.47017 * 269.99564 * 3 2 1 5 5 H 1.48492 * 109.47131 * 30.00139 * 3 2 1 6 6 H 1.48501 * 109.46802 * 149.99892 * 3 2 1 7 7 C 1.38812 * 120.00274 * 179.97438 * 2 1 3 8 8 H 1.07993 * 120.00187 * 180.02562 * 7 2 1 9 9 N 1.36944 * 119.99770 * 0.02562 * 7 2 1 10 10 C 1.46497 * 119.99791 * 179.97438 * 9 7 2 11 11 C 1.53786 * 113.61643 * 105.85866 * 10 9 7 12 12 C 1.54049 * 86.98426 * 140.01639 * 11 10 9 13 13 C 1.53002 * 113.62024 * 220.02020 * 12 11 10 14 14 O 1.42898 * 109.47362 * 272.49894 * 13 12 11 15 15 C 1.53781 * 113.61305 * 203.46713 * 10 9 7 16 16 H 0.96996 * 120.00281 * 0.02562 * 1 2 3 17 17 H 0.96995 * 120.00062 * 359.97438 * 9 7 2 18 18 H 1.09002 * 112.84935 * 334.66194 * 10 9 7 19 19 H 1.08992 * 113.61675 * 254.61383 * 11 10 9 20 20 H 1.09000 * 113.60973 * 25.51671 * 11 10 9 21 21 H 1.08996 * 113.68970 * 89.12734 * 12 11 10 22 22 H 1.08997 * 109.47064 * 32.50151 * 13 12 11 23 23 H 1.09006 * 109.47182 * 152.49563 * 13 12 11 24 24 H 0.96702 * 114.00000 * 180.02562 * 14 13 12 25 25 H 1.08999 * 113.61567 * 334.48111 * 15 10 9 26 26 H 1.08998 * 113.61196 * 105.38466 * 15 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6178 0.0000 4 1 2.4977 2.0464 -1.4001 5 1 1.4476 2.6526 0.7000 6 1 3.5477 1.4402 0.7001 7 6 2.0104 -1.2021 0.0005 8 1 3.0903 -1.2021 0.0010 9 7 1.3256 -2.3881 0.0005 10 6 2.0582 -3.6568 0.0005 11 6 2.0328 -4.3828 1.3560 12 6 1.8625 -5.6908 0.5602 13 6 0.8750 -6.6712 1.1963 14 8 1.5629 -7.4958 2.1390 15 6 1.2469 -4.8365 -0.5606 16 1 -0.4850 0.8400 -0.0004 17 1 0.3557 -2.3881 0.0005 18 1 3.0560 -3.5693 -0.4293 19 1 2.9742 -4.3216 1.9018 20 1 1.1688 -4.1300 1.9705 21 1 2.8060 -6.1607 0.2828 22 1 0.0882 -6.1151 1.7060 23 1 0.4334 -7.2968 0.4205 24 1 0.9971 -8.1432 2.5817 25 1 0.1684 -4.7076 -0.4690 26 1 1.5543 -5.1413 -1.5609 RHF calculation, no. of doubly occupied orbitals= 32 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000575456948.mol2 26 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:00:36 Heat of formation + Delta-G solvation = -51.305182 kcal Electronic energy + Delta-G solvation = -9810.000244 eV Core-core repulsion = 7888.356754 eV Total energy + Delta-G solvation = -1921.643490 eV No. of doubly occupied orbitals = 32 Molecular weight (most abundant/longest-lived isotopes) = 171.100 amu Computer time = 0.14 seconds Orbital eigenvalues (eV) -40.08605 -37.26994 -35.36961 -32.24821 -28.50948 -26.46871 -25.72884 -22.32199 -20.57321 -19.10503 -18.11639 -16.94546 -16.33911 -15.75618 -15.47750 -14.93178 -14.28235 -13.40640 -13.25610 -13.15511 -12.77214 -12.50484 -12.20196 -12.05067 -11.59661 -11.52391 -11.20265 -10.83486 -10.67365 -8.99231 -7.95841 -5.24376 1.47109 1.48935 1.57526 2.56089 3.29915 3.38165 3.77000 3.86932 4.13398 4.25034 4.33302 4.54212 4.58847 4.74776 4.94512 4.96388 5.03973 5.21146 5.39648 5.51061 5.69541 6.26892 6.96348 7.32458 8.09251 8.32877 9.27751 Molecular weight = 171.10amu Principal moments of inertia in cm(-1) A = 0.108897 B = 0.009420 C = 0.009279 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 257.062308 B = 2971.651429 C = 3016.898683 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.971 5.971 2 C -0.076 4.076 3 Si 0.975 3.025 4 H -0.285 1.285 5 H -0.295 1.295 6 H -0.270 1.270 7 C -0.247 4.247 8 H 0.076 0.924 9 N -0.729 5.729 10 C 0.142 3.858 11 C -0.156 4.156 12 C -0.097 4.097 13 C 0.090 3.910 14 O -0.592 6.592 15 C -0.130 4.130 16 H 0.252 0.748 17 H 0.374 0.626 18 H 0.074 0.926 19 H 0.051 0.949 20 H 0.061 0.939 21 H 0.098 0.902 22 H 0.043 0.957 23 H 0.065 0.935 24 H 0.395 0.605 25 H 0.076 0.924 26 H 0.079 0.921 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.958 -12.217 1.174 12.428 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.622 5.622 2 C -0.268 4.268 3 Si 0.803 3.197 4 H -0.212 1.212 5 H -0.222 1.222 6 H -0.195 1.195 7 C -0.379 4.379 8 H 0.094 0.906 9 N -0.367 5.367 10 C 0.032 3.968 11 C -0.196 4.196 12 C -0.116 4.116 13 C 0.013 3.987 14 O -0.400 6.400 15 C -0.169 4.169 16 H 0.060 0.940 17 H 0.206 0.794 18 H 0.092 0.908 19 H 0.070 0.930 20 H 0.080 0.920 21 H 0.116 0.884 22 H 0.062 0.938 23 H 0.083 0.917 24 H 0.244 0.756 25 H 0.095 0.905 26 H 0.098 0.902 Dipole moment (debyes) X Y Z Total from point charges 2.613 -11.714 0.971 12.041 hybrid contribution -0.605 0.783 0.274 1.027 sum 2.008 -10.931 1.246 11.184 Atomic orbital electron populations 1.69816 1.06660 1.26135 1.59594 1.25583 0.96405 1.01158 1.03660 0.85123 0.77680 0.79372 0.77497 1.21240 1.22150 1.19496 1.19733 0.91566 0.85505 1.41116 0.90650 1.42591 1.05360 1.01051 1.87653 1.21938 0.95559 0.84192 0.95069 1.23773 1.00565 0.96627 0.98672 1.22306 0.99750 0.93206 0.96372 1.22148 0.93420 0.91971 0.91207 1.86444 1.41370 1.53027 1.59185 1.23283 1.00047 0.95334 0.98261 0.93960 0.79425 0.90793 0.93002 0.92038 0.88414 0.93835 0.91713 0.75554 0.90506 0.90240 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.97 -60.34 13.06 21.65 0.28 -60.05 15 2 C -0.08 -4.44 5.50 84.86 0.47 -3.98 15 3 Si 0.97 46.76 29.55 68.60 2.03 48.79 15 4 H -0.29 -13.39 7.11 99.48 0.71 -12.68 15 5 H -0.29 -14.20 7.11 99.48 0.71 -13.49 15 6 H -0.27 -12.30 7.11 99.48 0.71 -11.59 15 7 C -0.25 -14.12 9.97 84.03 0.84 -13.28 15 8 H 0.08 4.13 7.83 -2.91 -0.02 4.11 15 9 N -0.73 -37.99 5.41 -320.44 -1.73 -39.72 15 10 C 0.14 5.82 4.47 45.52 0.20 6.02 15 11 C -0.16 -5.75 7.45 31.21 0.23 -5.52 15 12 C -0.10 -2.88 4.02 -10.18 -0.04 -2.92 15 13 C 0.09 2.22 6.89 71.98 0.50 2.72 15 14 O -0.59 -14.28 13.66 -148.98 -2.04 -16.31 15 15 C -0.13 -4.22 7.39 31.12 0.23 -3.99 15 16 H 0.25 15.10 8.31 -92.71 -0.77 14.33 15 17 H 0.37 20.70 7.91 -92.71 -0.73 19.97 15 18 H 0.07 3.01 8.11 -2.39 -0.02 2.99 15 19 H 0.05 1.90 8.14 -2.39 -0.02 1.88 15 20 H 0.06 2.44 7.90 -2.39 -0.02 2.42 15 21 H 0.10 2.75 8.14 -2.39 -0.02 2.73 15 22 H 0.04 1.10 7.85 -2.39 -0.02 1.08 15 23 H 0.06 1.31 8.14 -2.38 -0.02 1.29 15 24 H 0.39 5.37 9.12 -74.06 -0.68 4.70 15 25 H 0.08 2.53 8.07 -2.39 -0.02 2.51 15 26 H 0.08 2.29 8.14 -2.39 -0.02 2.27 15 Total: -1.00 -66.47 226.34 0.73 -65.73 By element: Atomic # 1 Polarization: 22.74 SS G_CDS: -0.24 Total: 22.51 kcal Atomic # 6 Polarization: -23.37 SS G_CDS: 2.43 Total: -20.94 kcal Atomic # 7 Polarization: -98.32 SS G_CDS: -1.45 Total: -99.77 kcal Atomic # 8 Polarization: -14.28 SS G_CDS: -2.04 Total: -16.31 kcal Atomic # 14 Polarization: 46.76 SS G_CDS: 2.03 Total: 48.79 kcal Total: -66.47 0.73 -65.73 kcal The number of atoms in the molecule is 26 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000575456948.mol2 26 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 14.429 kcal (2) G-P(sol) polarization free energy of solvation -66.466 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -52.037 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.732 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.734 kcal (6) G-S(sol) free energy of system = (1) + (5) -51.305 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.14 seconds