Wall clock time and date at job start Mon Mar 30 2020 01:52:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31518 * 1 3 3 Si 1.86795 * 119.99824 * 2 1 4 4 H 1.48500 * 109.47216 * 269.99876 * 3 2 1 5 5 H 1.48494 * 109.47496 * 30.00562 * 3 2 1 6 6 H 1.48507 * 109.47055 * 150.00374 * 3 2 1 7 7 C 1.37871 * 119.99542 * 180.02562 * 2 1 3 8 8 H 1.08005 * 119.99503 * 174.85265 * 7 2 1 9 9 C 1.50694 * 120.00596 * 355.13217 * 7 2 1 10 10 C 1.50704 * 112.93685 * 293.19398 * 9 7 2 11 11 O 1.20825 * 119.99469 * 114.53520 * 10 9 7 12 12 O 1.34226 * 120.00053 * 294.53435 * 10 9 7 13 13 C 1.53931 * 113.73523 * 161.48646 * 9 7 2 14 14 N 1.47960 * 86.18444 * 221.92151 * 13 9 7 15 15 C 1.47961 * 90.75975 * 24.69048 * 14 13 9 16 16 H 0.97003 * 120.00085 * 359.97438 * 1 2 3 17 17 H 0.96698 * 117.00047 * 179.97438 * 12 10 9 18 18 H 1.08995 * 113.76325 * 336.24046 * 13 9 7 19 19 H 1.09004 * 113.76163 * 107.60687 * 13 9 7 20 20 H 1.00891 * 111.00334 * 137.58150 * 14 13 9 21 21 H 1.09010 * 113.76107 * 220.99367 * 15 14 13 22 22 H 1.08998 * 113.75985 * 89.63297 * 15 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 2.4966 2.0464 -1.4001 5 1 1.4467 2.6526 0.7001 6 1 3.5468 1.4401 0.7000 7 6 2.0044 -1.1941 -0.0005 8 1 3.0812 -1.1959 -0.0845 9 6 1.2551 -2.4968 0.1096 10 6 0.5842 -2.6772 1.4470 11 8 -0.6214 -2.7129 1.5181 12 8 1.3261 -2.7983 2.5591 13 6 2.0692 -3.7205 -0.3479 14 7 0.8255 -4.1780 -1.0060 15 6 0.3339 -2.7850 -1.0895 16 1 -0.4850 0.8401 0.0004 17 1 0.8509 -2.9117 3.3936 18 1 2.8714 -3.4786 -1.0450 19 1 2.3947 -4.3625 0.4706 20 1 1.0177 -4.5493 -1.9242 21 1 -0.7273 -2.6794 -0.8635 22 1 0.6285 -2.2694 -2.0036 RHF calculation, no. of doubly occupied orbitals= 31 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000575468209.mol2 22 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:52:59 Heat of formation + Delta-G solvation = -89.779646 kcal Electronic energy + Delta-G solvation = -10245.213322 eV Core-core repulsion = 8186.068359 eV Total energy + Delta-G solvation = -2059.144963 eV No. of doubly occupied orbitals = 31 Molecular weight (most abundant/longest-lived isotopes) = 171.068 amu Computer time = 0.09 seconds Orbital eigenvalues (eV) -41.37766 -39.13116 -36.62141 -34.68528 -30.06790 -26.69704 -26.11227 -23.82267 -20.25692 -19.40489 -18.32748 -17.37421 -16.86050 -16.09949 -15.75646 -14.91741 -14.43912 -13.93651 -13.30168 -12.99888 -12.81476 -12.70944 -12.34085 -12.18667 -11.46883 -11.21655 -10.91294 -10.62933 -9.74466 -8.22522 -6.40635 1.41570 1.45177 1.55767 1.77624 2.38415 2.58361 3.11576 3.48176 4.09718 4.41282 4.58412 4.74832 5.05340 5.20661 5.28601 5.38852 5.64949 5.91979 6.03141 6.53531 6.65246 7.28723 7.48182 8.82161 Molecular weight = 171.07amu Principal moments of inertia in cm(-1) A = 0.050548 B = 0.020743 C = 0.018717 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 553.791552 B = 1349.550729 C = 1495.625135 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.900 5.900 2 C 0.017 3.983 3 Si 0.965 3.035 4 H -0.269 1.269 5 H -0.289 1.289 6 H -0.262 1.262 7 C -0.531 4.531 8 H 0.079 0.921 9 C 0.037 3.963 10 C 0.512 3.488 11 O -0.562 6.562 12 O -0.517 6.517 13 C 0.030 3.970 14 N -0.651 5.651 15 C 0.056 3.944 16 H 0.264 0.736 17 H 0.406 0.594 18 H 0.088 0.912 19 H 0.084 0.916 20 H 0.324 0.676 21 H 0.054 0.946 22 H 0.064 0.936 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.011 -2.929 -0.195 5.808 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.536 5.536 2 C -0.185 4.185 3 Si 0.790 3.210 4 H -0.194 1.194 5 H -0.215 1.215 6 H -0.186 1.186 7 C -0.569 4.569 8 H 0.097 0.903 9 C 0.035 3.965 10 C 0.357 3.643 11 O -0.453 6.453 12 O -0.329 6.329 13 C -0.100 4.100 14 N -0.276 5.276 15 C -0.075 4.075 16 H 0.073 0.927 17 H 0.265 0.735 18 H 0.106 0.894 19 H 0.103 0.897 20 H 0.137 0.863 21 H 0.072 0.928 22 H 0.082 0.918 Dipole moment (debyes) X Y Z Total from point charges 4.260 -3.192 0.042 5.324 hybrid contribution 0.117 1.410 -0.024 1.415 sum 4.377 -1.782 0.019 4.726 Atomic orbital electron populations 1.70200 1.07444 1.27948 1.47966 1.25961 0.95650 1.03191 0.93703 0.85437 0.78702 0.78274 0.78629 1.19377 1.21520 1.18580 1.21086 0.93863 0.89142 1.52794 0.90289 1.19585 0.94583 0.96306 0.86043 1.24051 0.85130 0.68168 0.86941 1.90499 1.18086 1.48962 1.87760 1.84556 1.44920 1.84870 1.18506 1.23753 0.92937 0.94121 0.99199 1.66922 1.18784 1.18731 1.23189 1.23293 0.99201 0.87444 0.97533 0.92664 0.73535 0.89371 0.89745 0.86317 0.92774 0.91766 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -51.51 12.37 21.45 0.27 -51.24 14 2 C 0.02 0.92 5.32 84.65 0.45 1.37 14 3 Si 0.97 41.56 29.54 68.60 2.03 43.58 14 4 H -0.27 -11.09 7.11 99.48 0.71 -10.38 14 5 H -0.29 -12.58 7.11 99.48 0.71 -11.87 14 6 H -0.26 -10.80 7.11 99.48 0.71 -10.10 14 7 C -0.53 -27.48 8.33 25.60 0.21 -27.27 14 8 H 0.08 3.88 7.82 -2.91 -0.02 3.86 14 9 C 0.04 1.81 0.77 -53.03 -0.04 1.77 14 10 C 0.51 26.20 6.71 71.24 0.48 26.68 14 11 O -0.56 -31.92 16.71 21.97 0.37 -31.55 14 12 O -0.52 -22.02 13.42 -51.38 -0.69 -22.71 14 13 C 0.03 1.18 8.02 86.40 0.69 1.88 14 14 N -0.65 -26.15 8.45 -523.51 -4.42 -30.58 14 15 C 0.06 2.66 7.14 86.41 0.62 3.28 14 16 H 0.26 14.53 8.31 -92.71 -0.77 13.76 14 17 H 0.41 12.98 9.10 -74.06 -0.67 12.31 14 18 H 0.09 3.10 8.09 -2.39 -0.02 3.08 14 19 H 0.08 3.13 8.09 -2.38 -0.02 3.11 14 20 H 0.32 10.69 8.91 -89.70 -0.80 9.89 14 21 H 0.05 2.94 7.34 -2.38 -0.02 2.92 14 22 H 0.06 3.00 8.09 -2.39 -0.02 2.98 14 Total: -1.00 -64.98 203.87 -0.26 -65.24 By element: Atomic # 1 Polarization: 19.78 SS G_CDS: -0.22 Total: 19.56 kcal Atomic # 6 Polarization: 5.29 SS G_CDS: 2.41 Total: 7.70 kcal Atomic # 7 Polarization: -77.66 SS G_CDS: -4.16 Total: -81.82 kcal Atomic # 8 Polarization: -53.94 SS G_CDS: -0.32 Total: -54.26 kcal Atomic # 14 Polarization: 41.56 SS G_CDS: 2.03 Total: 43.58 kcal Total: -64.98 -0.26 -65.24 kcal The number of atoms in the molecule is 22 The average number of expansion shells was 14.00 The maximum number of expansion shells was 14 The minimum number of expansion shells was 14 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000575468209.mol2 22 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -24.538 kcal (2) G-P(sol) polarization free energy of solvation -64.977 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -89.515 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.264 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.242 kcal (6) G-S(sol) free energy of system = (1) + (5) -89.780 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.09 seconds