Wall clock time and date at job start Mon Mar 30 2020 02:08:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42905 * 1 3 3 C 1.42899 * 113.99778 * 2 1 4 4 C 1.52995 * 115.55028 * 325.66447 * 3 2 1 5 5 C 1.52996 * 117.49948 * 111.37621 * 3 2 1 6 6 C 1.53001 * 60.00248 * 107.48549 * 5 3 2 7 7 H 1.09003 * 117.51390 * 107.47420 * 6 5 3 8 8 N 1.46496 * 117.50397 * 252.51042 * 6 5 3 9 9 C 1.36931 * 120.00349 * 223.62316 * 8 6 5 10 10 H 1.08000 * 119.99859 * 359.97438 * 9 8 6 11 11 C 1.38810 * 120.00177 * 179.97438 * 9 8 6 12 12 N 1.31621 * 120.00025 * 359.97438 * 11 9 8 13 13 Si 1.86801 * 120.00032 * 179.97438 * 11 9 8 14 14 H 1.48500 * 109.46852 * 89.99750 * 13 11 9 15 15 H 1.48498 * 109.47518 * 209.99777 * 13 11 9 16 16 H 1.48497 * 109.47134 * 330.00508 * 13 11 9 17 17 H 1.09001 * 109.46558 * 60.00281 * 1 2 3 18 18 H 1.09001 * 109.47103 * 179.97438 * 1 2 3 19 19 H 1.09000 * 109.47187 * 300.00233 * 1 2 3 20 20 H 1.09005 * 109.47166 * 34.42306 * 4 3 2 21 21 H 1.09008 * 109.47239 * 154.41886 * 4 3 2 22 22 H 1.08997 * 109.47672 * 274.42179 * 4 3 2 23 23 H 1.09002 * 117.50180 * 214.97852 * 5 3 2 24 24 H 1.09004 * 117.49905 * 359.97438 * 5 3 2 25 25 H 0.96999 * 119.99574 * 43.61614 * 8 6 5 26 26 H 0.96998 * 119.99635 * 179.97438 * 12 11 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4291 0.0000 0.0000 3 6 2.0102 1.3055 0.0000 4 6 1.2373 2.3719 -0.7786 5 6 2.7494 1.7497 1.2637 6 6 3.5374 1.3988 0.0001 7 1 3.9914 2.2201 -0.5546 8 7 4.2919 0.1431 0.0001 9 6 5.5658 0.1097 -0.5010 10 1 6.0142 1.0090 -0.8966 11 6 6.2809 -1.0801 -0.5005 12 7 5.7346 -2.1760 -0.0179 13 14 8.0185 -1.1258 -1.1847 14 1 8.9864 -0.8322 -0.0975 15 1 8.2953 -2.4735 -1.7433 16 1 8.1551 -0.1077 -2.2571 17 1 -0.3632 0.5138 -0.8900 18 1 -0.3633 -1.0277 -0.0005 19 1 -0.3633 0.5139 0.8900 20 1 0.1675 2.1825 -0.6900 21 1 1.4668 3.3567 -0.3715 22 1 1.5268 2.3363 -1.8288 23 1 2.6851 2.8019 1.5409 24 1 2.7921 1.0463 2.0954 25 1 3.8891 -0.6647 0.3551 26 1 6.2342 -3.0075 -0.0179 RHF calculation, no. of doubly occupied orbitals= 32 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000575528245.mol2 26 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:08:36 Heat of formation + Delta-G solvation = -4.391402 kcal Electronic energy + Delta-G solvation = -9989.128434 eV Core-core repulsion = 8069.519278 eV Total energy + Delta-G solvation = -1919.609156 eV No. of doubly occupied orbitals = 32 Molecular weight (most abundant/longest-lived isotopes) = 171.100 amu Computer time = 0.12 seconds Orbital eigenvalues (eV) -38.41004 -35.05255 -32.95802 -30.01739 -27.89388 -26.05621 -23.71386 -20.60844 -19.61269 -17.19280 -16.04525 -14.89795 -14.63516 -14.23338 -13.56213 -12.95706 -12.77955 -12.54013 -11.76912 -11.31899 -11.05563 -10.93147 -10.77459 -10.55419 -10.20449 -10.06634 -9.72174 -8.75275 -8.37046 -6.85273 -5.79040 -3.07216 3.43441 3.48141 3.50676 4.22049 4.55182 4.66376 5.21843 5.45298 5.47795 5.67011 5.71684 5.79934 5.88607 6.03850 6.15376 6.20621 6.32834 6.42830 6.48900 6.92338 7.67652 7.88987 8.39315 9.50220 10.07939 10.43925 11.42514 Molecular weight = 171.10amu Principal moments of inertia in cm(-1) A = 0.075516 B = 0.011725 C = 0.010928 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 370.695210 B = 2387.457700 C = 2561.686186 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.028 3.972 2 O -0.337 6.337 3 C -0.014 4.014 4 C -0.135 4.135 5 C -0.245 4.245 6 C 0.174 3.826 7 H 0.107 0.893 8 N -0.677 5.677 9 C -0.253 4.253 10 H 0.075 0.925 11 C -0.009 4.009 12 N -0.925 5.925 13 Si 0.913 3.087 14 H -0.288 1.288 15 H -0.290 1.290 16 H -0.280 1.280 17 H 0.039 0.961 18 H 0.078 0.922 19 H 0.033 0.967 20 H 0.058 0.942 21 H 0.063 0.937 22 H 0.062 0.938 23 H 0.082 0.918 24 H 0.089 0.911 25 H 0.395 0.605 26 H 0.257 0.743 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.013 7.124 -0.432 10.730 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.068 4.068 2 O -0.255 6.255 3 C -0.058 4.058 4 C -0.192 4.192 5 C -0.287 4.287 6 C 0.058 3.942 7 H 0.125 0.875 8 N -0.310 5.310 9 C -0.384 4.384 10 H 0.093 0.907 11 C -0.206 4.206 12 N -0.572 5.572 13 Si 0.743 3.257 14 H -0.215 1.215 15 H -0.216 1.216 16 H -0.206 1.206 17 H 0.057 0.943 18 H 0.097 0.903 19 H 0.052 0.948 20 H 0.077 0.923 21 H 0.082 0.918 22 H 0.081 0.919 23 H 0.101 0.899 24 H 0.107 0.893 25 H 0.230 0.770 26 H 0.067 0.933 Dipole moment (debyes) X Y Z Total from point charges -7.657 6.890 -0.537 10.314 hybrid contribution 0.392 -0.171 -0.031 0.429 sum -7.264 6.719 -0.568 9.911 Atomic orbital electron populations 1.22699 0.83196 1.01762 0.99191 1.88043 1.17980 1.25153 1.94302 1.22939 0.97019 0.84645 1.01165 1.21702 0.99636 0.97478 1.00379 1.24416 1.09318 1.00347 0.94643 1.21271 0.85360 0.91797 0.95792 0.87525 1.41966 1.13395 1.05464 1.70163 1.19335 0.90094 0.95225 1.33748 0.90721 1.24837 0.98897 0.95539 1.01317 1.69704 1.37289 0.99608 1.50586 0.86112 0.84147 0.76892 0.78542 1.21537 1.21648 1.20563 0.94263 0.90341 0.94815 0.92293 0.91808 0.91899 0.89927 0.89252 0.77044 0.93271 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.43 10.05 101.05 1.02 1.45 15 2 O -0.34 -7.01 10.39 -35.23 -0.37 -7.37 15 3 C -0.01 -0.27 3.03 -90.62 -0.27 -0.54 15 4 C -0.13 -1.98 9.49 37.15 0.35 -1.62 15 5 C -0.25 -4.68 10.05 -26.73 -0.27 -4.95 15 6 C 0.17 3.81 6.34 -67.93 -0.43 3.38 15 7 H 0.11 2.15 8.12 -51.93 -0.42 1.73 15 8 N -0.68 -18.39 5.51 -53.43 -0.29 -18.69 15 9 C -0.25 -7.28 9.98 -15.06 -0.15 -7.43 15 10 H 0.07 2.03 7.82 -52.49 -0.41 1.62 15 11 C -0.01 -0.27 5.50 -17.43 -0.10 -0.36 15 12 N -0.93 -28.79 13.06 55.49 0.72 -28.06 15 13 Si 0.91 22.57 29.55 -169.99 -5.02 17.54 15 14 H -0.29 -7.06 7.11 56.52 0.40 -6.66 15 15 H -0.29 -7.21 7.11 56.52 0.40 -6.81 15 16 H -0.28 -6.69 7.11 56.52 0.40 -6.28 15 17 H 0.04 0.53 6.47 -51.93 -0.34 0.19 15 18 H 0.08 1.08 8.14 -51.93 -0.42 0.66 15 19 H 0.03 0.46 8.14 -51.93 -0.42 0.04 15 20 H 0.06 0.76 5.79 -51.93 -0.30 0.46 15 21 H 0.06 0.82 7.90 -51.92 -0.41 0.41 15 22 H 0.06 0.91 8.14 -51.93 -0.42 0.49 15 23 H 0.08 1.34 8.05 -51.93 -0.42 0.92 15 24 H 0.09 1.84 8.14 -51.93 -0.42 1.42 15 25 H 0.39 11.61 7.59 -40.82 -0.31 11.30 15 26 H 0.26 7.66 8.31 -40.82 -0.34 7.32 15 LS Contribution 226.88 15.07 3.42 3.42 Total: -1.00 -31.62 226.88 -4.83 -36.44 By element: Atomic # 1 Polarization: 10.23 SS G_CDS: -3.43 Total: 6.80 kcal Atomic # 6 Polarization: -10.23 SS G_CDS: 0.15 Total: -10.08 kcal Atomic # 7 Polarization: -47.18 SS G_CDS: 0.43 Total: -46.75 kcal Atomic # 8 Polarization: -7.01 SS G_CDS: -0.37 Total: -7.37 kcal Atomic # 14 Polarization: 22.57 SS G_CDS: -5.02 Total: 17.54 kcal Total LS contribution 3.42 Total: 3.42 kcal Total: -31.62 -4.83 -36.44 kcal The number of atoms in the molecule is 26 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000575528245.mol2 26 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 32.051 kcal (2) G-P(sol) polarization free energy of solvation -31.617 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 0.434 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.825 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.442 kcal (6) G-S(sol) free energy of system = (1) + (5) -4.391 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.12 seconds