Wall clock time and date at job start Mon Mar 30 2020 02:08:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42905 * 1 3 3 C 1.42899 * 113.99778 * 2 1 4 4 C 1.52995 * 115.55028 * 325.66447 * 3 2 1 5 5 C 1.52996 * 117.49948 * 111.37621 * 3 2 1 6 6 C 1.53001 * 60.00248 * 107.48549 * 5 3 2 7 7 H 1.09003 * 117.51390 * 107.47420 * 6 5 3 8 8 N 1.46496 * 117.50397 * 252.51042 * 6 5 3 9 9 C 1.36931 * 120.00349 * 223.62316 * 8 6 5 10 10 H 1.08000 * 119.99859 * 359.97438 * 9 8 6 11 11 C 1.38810 * 120.00177 * 179.97438 * 9 8 6 12 12 N 1.31621 * 120.00025 * 359.97438 * 11 9 8 13 13 Si 1.86801 * 120.00032 * 179.97438 * 11 9 8 14 14 H 1.48500 * 109.46852 * 89.99750 * 13 11 9 15 15 H 1.48498 * 109.47518 * 209.99777 * 13 11 9 16 16 H 1.48497 * 109.47134 * 330.00508 * 13 11 9 17 17 H 1.09001 * 109.46558 * 60.00281 * 1 2 3 18 18 H 1.09001 * 109.47103 * 179.97438 * 1 2 3 19 19 H 1.09000 * 109.47187 * 300.00233 * 1 2 3 20 20 H 1.09005 * 109.47166 * 34.42306 * 4 3 2 21 21 H 1.09008 * 109.47239 * 154.41886 * 4 3 2 22 22 H 1.08997 * 109.47672 * 274.42179 * 4 3 2 23 23 H 1.09002 * 117.50180 * 214.97852 * 5 3 2 24 24 H 1.09004 * 117.49905 * 359.97438 * 5 3 2 25 25 H 0.96999 * 119.99574 * 43.61614 * 8 6 5 26 26 H 0.96998 * 119.99635 * 179.97438 * 12 11 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4291 0.0000 0.0000 3 6 2.0102 1.3055 0.0000 4 6 1.2373 2.3719 -0.7786 5 6 2.7494 1.7497 1.2637 6 6 3.5374 1.3988 0.0001 7 1 3.9914 2.2201 -0.5546 8 7 4.2919 0.1431 0.0001 9 6 5.5658 0.1097 -0.5010 10 1 6.0142 1.0090 -0.8966 11 6 6.2809 -1.0801 -0.5005 12 7 5.7346 -2.1760 -0.0179 13 14 8.0185 -1.1258 -1.1847 14 1 8.9864 -0.8322 -0.0975 15 1 8.2953 -2.4735 -1.7433 16 1 8.1551 -0.1077 -2.2571 17 1 -0.3632 0.5138 -0.8900 18 1 -0.3633 -1.0277 -0.0005 19 1 -0.3633 0.5139 0.8900 20 1 0.1675 2.1825 -0.6900 21 1 1.4668 3.3567 -0.3715 22 1 1.5268 2.3363 -1.8288 23 1 2.6851 2.8019 1.5409 24 1 2.7921 1.0463 2.0954 25 1 3.8891 -0.6647 0.3551 26 1 6.2342 -3.0075 -0.0179 RHF calculation, no. of doubly occupied orbitals= 32 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000575528245.mol2 26 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:08:36 Heat of formation + Delta-G solvation = -27.345443 kcal Electronic energy + Delta-G solvation = -9990.123796 eV Core-core repulsion = 8069.519278 eV Total energy + Delta-G solvation = -1920.604518 eV No. of doubly occupied orbitals = 32 Molecular weight (most abundant/longest-lived isotopes) = 171.100 amu Computer time = 0.13 seconds Orbital eigenvalues (eV) -39.93306 -36.74650 -34.88464 -31.96701 -29.27283 -27.34792 -25.81041 -22.29149 -21.09045 -19.27504 -17.66791 -16.38671 -16.32200 -15.87600 -15.30541 -14.62403 -14.29225 -13.98052 -13.06496 -12.98284 -12.89830 -12.70191 -12.33296 -12.17544 -12.05146 -11.90139 -11.46110 -10.71329 -9.90548 -8.87289 -7.97954 -5.27635 1.47329 1.50641 1.59464 2.53172 2.81130 3.09361 3.44784 3.68772 4.09929 4.21802 4.38301 4.51668 4.58992 4.68582 4.79264 4.92498 4.95345 4.99964 5.21721 5.28446 5.47954 6.21662 6.52259 7.27610 8.02711 8.27077 9.25528 Molecular weight = 171.10amu Principal moments of inertia in cm(-1) A = 0.075516 B = 0.011725 C = 0.010928 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 370.695210 B = 2387.457700 C = 2561.686186 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.022 3.978 2 O -0.383 6.383 3 C 0.001 3.999 4 C -0.129 4.129 5 C -0.228 4.228 6 C 0.130 3.870 7 H 0.121 0.879 8 N -0.702 5.702 9 C -0.256 4.256 10 H 0.086 0.914 11 C -0.078 4.078 12 N -0.971 5.971 13 Si 0.986 3.014 14 H -0.284 1.284 15 H -0.295 1.295 16 H -0.264 1.264 17 H 0.060 0.940 18 H 0.087 0.913 19 H 0.050 0.950 20 H 0.080 0.920 21 H 0.088 0.912 22 H 0.064 0.936 23 H 0.120 0.880 24 H 0.067 0.933 25 H 0.376 0.624 26 H 0.253 0.747 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.738 8.992 -0.938 12.574 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.074 4.074 2 O -0.302 6.302 3 C -0.041 4.041 4 C -0.187 4.187 5 C -0.269 4.269 6 C 0.017 3.983 7 H 0.138 0.862 8 N -0.335 5.335 9 C -0.387 4.387 10 H 0.104 0.896 11 C -0.270 4.270 12 N -0.620 5.620 13 Si 0.813 3.187 14 H -0.211 1.211 15 H -0.222 1.222 16 H -0.188 1.188 17 H 0.079 0.921 18 H 0.105 0.895 19 H 0.068 0.932 20 H 0.099 0.901 21 H 0.107 0.893 22 H 0.083 0.917 23 H 0.138 0.862 24 H 0.085 0.915 25 H 0.208 0.792 26 H 0.062 0.938 Dipole moment (debyes) X Y Z Total from point charges -8.425 8.840 -1.047 12.256 hybrid contribution 0.477 -0.684 0.152 0.848 sum -7.947 8.155 -0.895 11.422 Atomic orbital electron populations 1.22951 0.80328 1.03118 1.00955 1.87975 1.21205 1.26481 1.94529 1.22995 0.95120 0.85282 1.00749 1.21737 1.00238 0.96928 0.99749 1.24327 1.07500 1.01886 0.93229 1.21692 0.87417 0.90585 0.98597 0.86162 1.42069 1.13566 1.06641 1.71272 1.19818 0.90929 0.95566 1.32406 0.89587 1.25774 1.03349 0.95252 1.02610 1.69885 1.39022 1.00133 1.53002 0.84971 0.78846 0.76785 0.78087 1.21074 1.22156 1.18835 0.92149 0.89459 0.93167 0.90122 0.89319 0.91746 0.86189 0.91482 0.79167 0.93833 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.63 10.05 113.37 1.14 1.77 15 2 O -0.38 -15.62 10.39 -148.98 -1.55 -17.16 15 3 C 0.00 0.05 3.03 -10.80 -0.03 0.02 15 4 C -0.13 -3.30 9.49 71.98 0.68 -2.62 15 5 C -0.23 -8.32 10.05 30.59 0.31 -8.01 15 6 C 0.13 5.58 6.34 44.99 0.29 5.87 15 7 H 0.12 4.70 8.12 -2.39 -0.02 4.68 15 8 N -0.70 -38.91 5.51 -322.94 -1.78 -40.69 15 9 C -0.26 -14.87 9.98 84.03 0.84 -14.04 15 10 H 0.09 4.64 7.82 -2.91 -0.02 4.62 15 11 C -0.08 -4.63 5.50 84.86 0.47 -4.16 15 12 N -0.97 -62.30 13.06 21.65 0.28 -62.01 15 13 Si 0.99 46.97 29.55 68.60 2.03 49.00 15 14 H -0.28 -13.19 7.11 99.48 0.71 -12.49 15 15 H -0.29 -14.14 7.11 99.48 0.71 -13.43 15 16 H -0.26 -11.70 7.11 99.48 0.71 -11.00 15 17 H 0.06 1.43 6.47 -2.39 -0.02 1.41 15 18 H 0.09 2.26 8.14 -2.39 -0.02 2.24 15 19 H 0.05 1.24 8.14 -2.39 -0.02 1.22 15 20 H 0.08 1.73 5.79 -2.38 -0.01 1.71 15 21 H 0.09 1.84 7.90 -2.38 -0.02 1.82 15 22 H 0.06 1.65 8.14 -2.39 -0.02 1.63 15 23 H 0.12 3.44 8.05 -2.39 -0.02 3.42 15 24 H 0.07 2.75 8.14 -2.39 -0.02 2.73 15 25 H 0.38 23.02 7.59 -92.71 -0.70 22.32 15 26 H 0.25 15.57 8.31 -92.71 -0.77 14.80 15 Total: -1.00 -69.49 226.88 3.13 -66.36 By element: Atomic # 1 Polarization: 25.22 SS G_CDS: 0.46 Total: 25.68 kcal Atomic # 6 Polarization: -24.86 SS G_CDS: 3.69 Total: -21.17 kcal Atomic # 7 Polarization: -101.21 SS G_CDS: -1.50 Total: -102.70 kcal Atomic # 8 Polarization: -15.62 SS G_CDS: -1.55 Total: -17.16 kcal Atomic # 14 Polarization: 46.97 SS G_CDS: 2.03 Total: 49.00 kcal Total: -69.49 3.13 -66.36 kcal The number of atoms in the molecule is 26 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000575528245.mol2 26 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 39.019 kcal (2) G-P(sol) polarization free energy of solvation -69.494 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -30.475 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.130 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.365 kcal (6) G-S(sol) free energy of system = (1) + (5) -27.345 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.13 seconds