Wall clock time and date at job start Mon Mar 30 2020 02:08:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42899 * 1 3 3 C 1.42905 * 113.99778 * 2 1 4 4 C 1.53005 * 115.54980 * 325.66843 * 3 2 1 5 5 C 1.52999 * 117.49933 * 111.37566 * 3 2 1 6 6 C 1.53000 * 117.49599 * 180.02562 * 3 2 1 7 7 H 1.08999 * 117.50126 * 0.02562 * 6 3 2 8 8 N 1.46496 * 117.49751 * 145.02049 * 6 3 2 9 9 C 1.36935 * 120.00099 * 204.99984 * 8 6 3 10 10 H 1.07997 * 119.99792 * 359.97438 * 9 8 6 11 11 C 1.38815 * 120.00195 * 179.97438 * 9 8 6 12 12 N 1.31617 * 119.99935 * 0.02562 * 11 9 8 13 13 Si 1.86804 * 119.99992 * 179.97438 * 11 9 8 14 14 H 1.48499 * 109.47059 * 0.02562 * 13 11 9 15 15 H 1.48502 * 109.46981 * 120.00403 * 13 11 9 16 16 H 1.48499 * 109.47288 * 240.00319 * 13 11 9 17 17 H 1.08999 * 109.46926 * 180.02562 * 1 2 3 18 18 H 1.08997 * 109.47442 * 300.00036 * 1 2 3 19 19 H 1.08997 * 109.47171 * 60.00232 * 1 2 3 20 20 H 1.09004 * 109.47115 * 34.41263 * 4 3 2 21 21 H 1.08991 * 109.46783 * 154.41977 * 4 3 2 22 22 H 1.09006 * 109.46642 * 274.41869 * 4 3 2 23 23 H 1.09000 * 117.49617 * 214.97358 * 5 3 2 24 24 H 1.08998 * 117.49904 * 0.02562 * 5 3 2 25 25 H 0.96997 * 120.00146 * 24.99715 * 8 6 3 26 26 H 0.97006 * 119.99711 * 180.02562 * 12 11 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3055 0.0000 4 6 1.2372 2.3720 -0.7785 5 6 2.7494 1.7497 1.2638 6 6 3.5373 1.3989 -0.0006 7 1 4.0987 0.4646 -0.0014 8 7 4.1472 2.5030 -0.7456 9 6 5.4261 2.3847 -1.2205 10 1 5.9853 1.4775 -1.0454 11 6 6.0038 3.4307 -1.9269 12 7 5.3225 4.5365 -2.1398 13 14 7.7487 3.2695 -2.5741 14 1 8.2931 1.9385 -2.2035 15 1 7.7429 3.4072 -4.0527 16 1 8.5970 4.3343 -1.9811 17 1 -0.3633 -1.0277 0.0005 18 1 -0.3634 0.5138 0.8899 19 1 -0.3633 0.5138 -0.8900 20 1 0.1674 2.1825 -0.6900 21 1 1.4667 3.3567 -0.3715 22 1 1.5268 2.3364 -1.8288 23 1 2.6851 2.8020 1.5408 24 1 2.7928 1.0461 2.0950 25 1 3.6451 3.3180 -0.9026 26 1 5.7261 5.2673 -2.6338 RHF calculation, no. of doubly occupied orbitals= 32 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000575533574.mol2 26 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:08:37 Heat of formation + Delta-G solvation = -27.048970 kcal Electronic energy + Delta-G solvation = -9968.617950 eV Core-core repulsion = 8048.026288 eV Total energy + Delta-G solvation = -1920.591662 eV No. of doubly occupied orbitals = 32 Molecular weight (most abundant/longest-lived isotopes) = 171.100 amu Computer time = 0.12 seconds Orbital eigenvalues (eV) -40.01077 -36.97241 -34.79466 -31.71003 -29.61505 -27.36655 -25.91608 -22.43947 -20.80188 -19.54550 -17.39049 -16.94380 -16.18121 -15.93000 -15.21598 -15.03617 -14.20713 -13.57229 -13.45764 -13.01416 -12.92563 -12.84317 -12.38281 -12.10963 -12.07213 -11.87283 -11.45336 -10.78166 -9.99093 -8.95733 -8.02435 -5.31975 1.48348 1.49015 1.60116 2.45893 2.71879 3.03211 3.41060 3.82955 3.89212 4.17261 4.27693 4.53551 4.60022 4.65981 4.78034 4.89339 4.92607 4.94134 5.17910 5.22750 5.47985 6.18755 6.39507 7.25582 7.94759 8.21273 9.20669 Molecular weight = 171.10amu Principal moments of inertia in cm(-1) A = 0.090159 B = 0.010864 C = 0.010516 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 310.488005 B = 2576.618952 C = 2662.057833 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.020 3.980 2 O -0.375 6.375 3 C 0.008 3.992 4 C -0.130 4.130 5 C -0.216 4.216 6 C 0.133 3.867 7 H 0.102 0.898 8 N -0.697 5.697 9 C -0.257 4.257 10 H 0.081 0.919 11 C -0.069 4.069 12 N -0.967 5.967 13 Si 0.981 3.019 14 H -0.265 1.265 15 H -0.291 1.291 16 H -0.290 1.290 17 H 0.103 0.897 18 H 0.050 0.950 19 H 0.050 0.950 20 H 0.088 0.912 21 H 0.062 0.938 22 H 0.049 0.951 23 H 0.089 0.911 24 H 0.105 0.895 25 H 0.380 0.620 26 H 0.255 0.745 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.906 -5.986 4.039 10.707 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.075 4.075 2 O -0.294 6.294 3 C -0.035 4.035 4 C -0.187 4.187 5 C -0.257 4.257 6 C 0.020 3.980 7 H 0.120 0.880 8 N -0.332 5.332 9 C -0.388 4.388 10 H 0.099 0.901 11 C -0.261 4.261 12 N -0.616 5.616 13 Si 0.809 3.191 14 H -0.189 1.189 15 H -0.218 1.218 16 H -0.217 1.217 17 H 0.121 0.879 18 H 0.068 0.932 19 H 0.069 0.931 20 H 0.106 0.894 21 H 0.081 0.919 22 H 0.068 0.932 23 H 0.107 0.893 24 H 0.123 0.877 25 H 0.213 0.787 26 H 0.064 0.936 Dipole moment (debyes) X Y Z Total from point charges -7.584 -6.206 3.960 10.569 hybrid contribution 0.438 0.678 -0.396 0.899 sum -7.146 -5.528 3.564 9.712 Atomic orbital electron populations 1.22984 0.79986 1.03742 1.00815 1.87839 1.21494 1.25434 1.94620 1.22763 0.95034 0.85064 1.00674 1.21565 1.00487 0.97058 0.99567 1.24338 1.06235 1.01694 0.93483 1.21385 0.89032 0.92657 0.94922 0.87964 1.42087 1.13609 1.14688 1.62864 1.19769 0.90745 1.00598 1.27697 0.90132 1.25657 1.02934 0.95984 1.01554 1.69824 1.38791 1.06361 1.46657 0.84966 0.79035 0.77766 0.77291 1.18898 1.21756 1.21677 0.87883 0.93153 0.93118 0.89372 0.91895 0.93207 0.89275 0.87654 0.78672 0.93599 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.50 10.05 113.37 1.14 1.63 15 2 O -0.38 -12.94 10.96 -148.98 -1.63 -14.57 15 3 C 0.01 0.28 3.03 -10.79 -0.03 0.24 15 4 C -0.13 -4.42 8.49 71.98 0.61 -3.81 15 5 C -0.22 -7.90 10.05 30.61 0.31 -7.59 15 6 C 0.13 5.79 6.55 45.01 0.29 6.09 15 7 H 0.10 4.47 8.12 -2.39 -0.02 4.45 15 8 N -0.70 -36.49 5.39 -322.86 -1.74 -38.23 15 9 C -0.26 -14.53 9.98 84.03 0.84 -13.69 15 10 H 0.08 4.37 7.82 -2.91 -0.02 4.35 15 11 C -0.07 -3.94 5.50 84.86 0.47 -3.47 15 12 N -0.97 -58.85 13.06 21.65 0.28 -58.57 15 13 Si 0.98 45.90 29.55 68.60 2.03 47.93 15 14 H -0.26 -11.65 7.11 99.48 0.71 -10.94 15 15 H -0.29 -13.52 7.11 99.48 0.71 -12.81 15 16 H -0.29 -13.45 7.11 99.48 0.71 -12.75 15 17 H 0.10 1.98 8.14 -2.39 -0.02 1.96 15 18 H 0.05 1.09 8.14 -2.39 -0.02 1.07 15 19 H 0.05 1.15 6.47 -2.39 -0.02 1.14 15 20 H 0.09 2.38 5.79 -2.39 -0.01 2.36 15 21 H 0.06 2.19 7.61 -2.39 -0.02 2.17 15 22 H 0.05 1.88 8.14 -2.38 -0.02 1.86 15 23 H 0.09 3.26 8.05 -2.39 -0.02 3.24 15 24 H 0.11 3.43 8.14 -2.39 -0.02 3.41 15 25 H 0.38 20.78 6.89 -92.71 -0.64 20.14 15 26 H 0.26 14.91 8.31 -92.70 -0.77 14.13 15 Total: -1.00 -63.33 225.54 3.09 -60.25 By element: Atomic # 1 Polarization: 23.26 SS G_CDS: 0.53 Total: 23.79 kcal Atomic # 6 Polarization: -24.22 SS G_CDS: 3.63 Total: -20.59 kcal Atomic # 7 Polarization: -95.34 SS G_CDS: -1.46 Total: -96.79 kcal Atomic # 8 Polarization: -12.94 SS G_CDS: -1.63 Total: -14.57 kcal Atomic # 14 Polarization: 45.90 SS G_CDS: 2.03 Total: 47.93 kcal Total: -63.33 3.09 -60.25 kcal The number of atoms in the molecule is 26 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000575533574.mol2 26 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 33.197 kcal (2) G-P(sol) polarization free energy of solvation -63.335 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -30.138 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.089 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.246 kcal (6) G-S(sol) free energy of system = (1) + (5) -27.049 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.12 seconds