Wall clock time and date at job start Mon Mar 30 2020 02:08:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42895 * 1 3 3 C 1.42903 * 114.00165 * 2 1 4 4 C 1.53008 * 115.55003 * 34.27824 * 3 2 1 5 5 C 1.53000 * 117.50143 * 248.61112 * 3 2 1 6 6 C 1.53002 * 60.02940 * 252.49656 * 5 3 2 7 7 H 1.09000 * 117.49996 * 107.50493 * 6 5 3 8 8 N 1.46501 * 117.49747 * 252.51859 * 6 5 3 9 9 C 1.36938 * 120.00083 * 223.61004 * 8 6 5 10 10 H 1.07994 * 120.00094 * 0.02562 * 9 8 6 11 11 C 1.38820 * 119.99949 * 180.02562 * 9 8 6 12 12 N 1.31612 * 120.00074 * 179.97438 * 11 9 8 13 13 Si 1.86801 * 119.99845 * 359.97438 * 11 9 8 14 14 H 1.48494 * 109.47119 * 90.00256 * 13 11 9 15 15 H 1.48501 * 109.47058 * 210.00427 * 13 11 9 16 16 H 1.48504 * 109.47462 * 329.99960 * 13 11 9 17 17 H 1.08996 * 109.47077 * 180.02562 * 1 2 3 18 18 H 1.09002 * 109.46987 * 299.99903 * 1 2 3 19 19 H 1.09005 * 109.47109 * 59.99936 * 1 2 3 20 20 H 1.09004 * 109.46917 * 325.72171 * 4 3 2 21 21 H 1.09001 * 109.46886 * 85.72099 * 4 3 2 22 22 H 1.08995 * 109.47352 * 205.72053 * 4 3 2 23 23 H 1.09002 * 117.49833 * 359.97438 * 5 3 2 24 24 H 1.09002 * 117.49953 * 144.99802 * 5 3 2 25 25 H 0.97008 * 120.00262 * 43.60731 * 8 6 5 26 26 H 0.97000 * 120.00135 * 179.97438 * 12 11 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4289 0.0000 0.0000 3 6 2.0102 1.3055 0.0000 4 6 1.2366 2.3723 0.7775 5 6 2.7497 1.7496 -1.2636 6 6 3.5380 1.3993 0.0000 7 1 4.0999 0.4653 0.0000 8 7 4.1479 2.5037 0.7447 9 6 5.4271 2.3858 1.2190 10 1 5.9865 1.4789 1.0438 11 6 6.0047 3.4322 1.9252 12 7 7.2339 3.3187 2.3815 13 14 5.0372 5.0012 2.2277 14 1 4.2875 4.8822 3.5040 15 1 5.9726 6.1517 2.3085 16 1 4.0824 5.2172 1.1110 17 1 -0.3633 -1.0276 0.0005 18 1 -0.3633 0.5138 0.8900 19 1 -0.3633 0.5139 -0.8900 20 1 0.1670 2.1814 0.6901 21 1 1.5271 2.3388 1.8275 22 1 1.4646 3.3567 0.3687 23 1 2.7933 1.0458 -2.0949 24 1 2.6852 2.8017 -1.5411 25 1 3.6455 3.3186 0.9018 26 1 7.6377 4.0499 2.8746 RHF calculation, no. of doubly occupied orbitals= 32 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000575533578.mol2 26 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:08:40 Heat of formation + Delta-G solvation = -1.193458 kcal Electronic energy + Delta-G solvation = -10021.712356 eV Core-core repulsion = 8102.241873 eV Total energy + Delta-G solvation = -1919.470483 eV No. of doubly occupied orbitals = 32 Molecular weight (most abundant/longest-lived isotopes) = 171.100 amu Computer time = 0.10 seconds Orbital eigenvalues (eV) -38.65306 -35.52352 -32.88673 -30.36448 -28.38254 -26.26736 -23.59707 -20.87994 -19.41115 -17.94318 -16.06154 -15.28180 -14.73625 -14.50381 -13.82068 -12.99364 -12.82243 -12.33294 -12.12316 -11.70867 -11.31348 -11.18213 -10.95729 -10.64457 -10.33712 -10.09509 -9.69372 -8.90334 -8.56712 -7.28126 -5.87525 -3.23919 3.30219 3.32882 3.38507 3.92312 4.49053 4.50063 5.13754 5.23566 5.38019 5.52281 5.55134 5.56534 5.73021 5.76294 6.03646 6.16428 6.17884 6.32189 6.40321 6.75183 7.62726 7.89572 8.32102 9.07527 9.79062 9.97058 11.29830 Molecular weight = 171.10amu Principal moments of inertia in cm(-1) A = 0.073067 B = 0.012813 C = 0.011861 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 383.119880 B = 2184.745787 C = 2360.077134 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.029 3.971 2 O -0.352 6.352 3 C -0.011 4.011 4 C -0.138 4.138 5 C -0.236 4.236 6 C 0.179 3.821 7 H 0.116 0.884 8 N -0.705 5.705 9 C -0.256 4.256 10 H 0.097 0.903 11 C 0.012 3.988 12 N -0.925 5.925 13 Si 0.881 3.119 14 H -0.281 1.281 15 H -0.287 1.287 16 H -0.277 1.277 17 H 0.079 0.921 18 H 0.042 0.958 19 H 0.036 0.964 20 H 0.059 0.941 21 H 0.068 0.932 22 H 0.063 0.937 23 H 0.091 0.909 24 H 0.088 0.912 25 H 0.365 0.635 26 H 0.262 0.738 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.555 -1.967 -4.292 13.414 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.068 4.068 2 O -0.270 6.270 3 C -0.054 4.054 4 C -0.195 4.195 5 C -0.278 4.278 6 C 0.065 3.935 7 H 0.134 0.866 8 N -0.341 5.341 9 C -0.385 4.385 10 H 0.114 0.886 11 C -0.185 4.185 12 N -0.572 5.572 13 Si 0.711 3.289 14 H -0.207 1.207 15 H -0.213 1.213 16 H -0.203 1.203 17 H 0.097 0.903 18 H 0.061 0.939 19 H 0.055 0.945 20 H 0.078 0.922 21 H 0.086 0.914 22 H 0.082 0.918 23 H 0.109 0.891 24 H 0.106 0.894 25 H 0.199 0.801 26 H 0.072 0.928 Dipole moment (debyes) X Y Z Total from point charges -12.125 -2.172 -4.165 13.003 hybrid contribution -0.958 1.417 0.142 1.716 sum -13.083 -0.755 -4.023 13.708 Atomic orbital electron populations 1.22700 0.82570 1.01764 0.99747 1.87898 1.18721 1.25898 1.94504 1.22972 0.96822 0.84369 1.01217 1.21641 0.99230 0.97604 1.01037 1.24413 1.08146 1.01276 0.93921 1.21132 0.86811 0.93299 0.92300 0.86610 1.42377 1.14465 1.13659 1.63626 1.19142 0.88130 1.02667 1.28572 0.88561 1.24680 0.96172 0.97987 0.99667 1.69688 1.13276 1.32853 1.41333 0.86609 0.79631 0.84444 0.78262 1.20709 1.21286 1.20281 0.90269 0.93912 0.94510 0.92183 0.91352 0.91765 0.89089 0.89391 0.80100 0.92750 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.38 10.04 101.05 1.01 1.39 15 2 O -0.35 -6.18 10.96 -35.23 -0.39 -6.57 15 3 C -0.01 -0.20 3.03 -90.58 -0.27 -0.47 15 4 C -0.14 -2.23 8.50 37.16 0.32 -1.92 15 5 C -0.24 -4.23 10.05 -26.73 -0.27 -4.50 15 6 C 0.18 3.76 6.55 -67.89 -0.44 3.31 15 7 H 0.12 2.46 8.12 -51.93 -0.42 2.04 15 8 N -0.70 -17.13 5.19 -53.39 -0.28 -17.40 15 9 C -0.26 -7.26 10.46 -15.06 -0.16 -7.42 15 10 H 0.10 2.90 8.05 -52.49 -0.42 2.48 15 11 C 0.01 0.34 5.50 -17.43 -0.10 0.24 15 12 N -0.93 -28.77 13.97 55.49 0.78 -28.00 15 13 Si 0.88 21.78 27.73 -169.99 -4.71 17.06 15 14 H -0.28 -6.86 7.11 56.52 0.40 -6.45 15 15 H -0.29 -7.13 7.11 56.52 0.40 -6.73 15 16 H -0.28 -6.44 6.52 56.52 0.37 -6.07 15 17 H 0.08 0.85 8.14 -51.93 -0.42 0.43 15 18 H 0.04 0.52 6.47 -51.93 -0.34 0.18 15 19 H 0.04 0.44 8.14 -51.93 -0.42 0.01 15 20 H 0.06 0.81 5.78 -51.93 -0.30 0.51 15 21 H 0.07 1.17 8.14 -51.93 -0.42 0.75 15 22 H 0.06 1.02 7.61 -51.93 -0.40 0.62 15 23 H 0.09 1.51 8.14 -51.93 -0.42 1.08 15 24 H 0.09 1.54 8.05 -51.93 -0.42 1.13 15 25 H 0.37 8.58 4.76 -40.82 -0.19 8.38 15 26 H 0.26 7.72 8.31 -40.82 -0.34 7.38 15 LS Contribution 222.43 15.07 3.35 3.35 Total: -1.00 -30.67 222.43 -4.51 -35.18 By element: Atomic # 1 Polarization: 9.08 SS G_CDS: -3.35 Total: 5.74 kcal Atomic # 6 Polarization: -9.45 SS G_CDS: 0.09 Total: -9.36 kcal Atomic # 7 Polarization: -45.90 SS G_CDS: 0.50 Total: -45.40 kcal Atomic # 8 Polarization: -6.18 SS G_CDS: -0.39 Total: -6.57 kcal Atomic # 14 Polarization: 21.78 SS G_CDS: -4.71 Total: 17.06 kcal Total LS contribution 3.35 Total: 3.35 kcal Total: -30.67 -4.51 -35.18 kcal The number of atoms in the molecule is 26 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000575533578.mol2 26 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 33.985 kcal (2) G-P(sol) polarization free energy of solvation -30.671 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 3.314 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.508 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.179 kcal (6) G-S(sol) free energy of system = (1) + (5) -1.193 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.10 seconds