Wall clock time and date at job start Mon Mar 30 2020 02:08:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42895 * 1 3 3 C 1.42903 * 114.00165 * 2 1 4 4 C 1.53008 * 115.55003 * 34.27824 * 3 2 1 5 5 C 1.53000 * 117.50143 * 248.61112 * 3 2 1 6 6 C 1.53002 * 60.02940 * 252.49656 * 5 3 2 7 7 H 1.09000 * 117.49996 * 107.50493 * 6 5 3 8 8 N 1.46501 * 117.49747 * 252.51859 * 6 5 3 9 9 C 1.36938 * 120.00083 * 223.61004 * 8 6 5 10 10 H 1.07994 * 120.00094 * 0.02562 * 9 8 6 11 11 C 1.38820 * 119.99949 * 180.02562 * 9 8 6 12 12 N 1.31612 * 120.00074 * 179.97438 * 11 9 8 13 13 Si 1.86801 * 119.99845 * 359.97438 * 11 9 8 14 14 H 1.48494 * 109.47119 * 90.00256 * 13 11 9 15 15 H 1.48501 * 109.47058 * 210.00427 * 13 11 9 16 16 H 1.48504 * 109.47462 * 329.99960 * 13 11 9 17 17 H 1.08996 * 109.47077 * 180.02562 * 1 2 3 18 18 H 1.09002 * 109.46987 * 299.99903 * 1 2 3 19 19 H 1.09005 * 109.47109 * 59.99936 * 1 2 3 20 20 H 1.09004 * 109.46917 * 325.72171 * 4 3 2 21 21 H 1.09001 * 109.46886 * 85.72099 * 4 3 2 22 22 H 1.08995 * 109.47352 * 205.72053 * 4 3 2 23 23 H 1.09002 * 117.49833 * 359.97438 * 5 3 2 24 24 H 1.09002 * 117.49953 * 144.99802 * 5 3 2 25 25 H 0.97008 * 120.00262 * 43.60731 * 8 6 5 26 26 H 0.97000 * 120.00135 * 179.97438 * 12 11 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4289 0.0000 0.0000 3 6 2.0102 1.3055 0.0000 4 6 1.2366 2.3723 0.7775 5 6 2.7497 1.7496 -1.2636 6 6 3.5380 1.3993 0.0000 7 1 4.0999 0.4653 0.0000 8 7 4.1479 2.5037 0.7447 9 6 5.4271 2.3858 1.2190 10 1 5.9865 1.4789 1.0438 11 6 6.0047 3.4322 1.9252 12 7 7.2339 3.3187 2.3815 13 14 5.0372 5.0012 2.2277 14 1 4.2875 4.8822 3.5040 15 1 5.9726 6.1517 2.3085 16 1 4.0824 5.2172 1.1110 17 1 -0.3633 -1.0276 0.0005 18 1 -0.3633 0.5138 0.8900 19 1 -0.3633 0.5139 -0.8900 20 1 0.1670 2.1814 0.6901 21 1 1.5271 2.3388 1.8275 22 1 1.4646 3.3567 0.3687 23 1 2.7933 1.0458 -2.0949 24 1 2.6852 2.8017 -1.5411 25 1 3.6455 3.3186 0.9018 26 1 7.6377 4.0499 2.8746 RHF calculation, no. of doubly occupied orbitals= 32 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000575533578.mol2 26 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:08:40 Heat of formation + Delta-G solvation = -23.274154 kcal Electronic energy + Delta-G solvation = -10022.669847 eV Core-core repulsion = 8102.241873 eV Total energy + Delta-G solvation = -1920.427974 eV No. of doubly occupied orbitals = 32 Molecular weight (most abundant/longest-lived isotopes) = 171.100 amu Computer time = 0.12 seconds Orbital eigenvalues (eV) -40.08711 -37.09537 -34.81846 -32.36146 -29.68277 -27.39623 -25.64714 -22.49417 -20.90831 -19.94257 -17.54566 -16.85952 -16.34801 -15.94270 -15.38865 -14.78184 -14.28107 -14.02082 -13.58128 -13.16328 -13.01085 -12.87320 -12.41995 -12.14745 -12.10580 -11.87578 -11.46623 -10.84786 -10.03662 -9.21794 -8.08890 -5.44184 1.34435 1.38977 1.45857 2.43110 2.57761 2.97215 3.30140 3.58274 3.82229 4.10024 4.17260 4.51916 4.59266 4.62822 4.74669 4.85957 4.90283 4.92645 5.14159 5.16571 5.69843 6.14571 6.37263 6.97598 7.70295 7.91661 9.11921 Molecular weight = 171.10amu Principal moments of inertia in cm(-1) A = 0.073067 B = 0.012813 C = 0.011861 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 383.119880 B = 2184.745787 C = 2360.077134 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.020 3.980 2 O -0.377 6.377 3 C 0.010 3.990 4 C -0.140 4.140 5 C -0.212 4.212 6 C 0.133 3.867 7 H 0.098 0.902 8 N -0.711 5.711 9 C -0.248 4.248 10 H 0.059 0.941 11 C -0.056 4.056 12 N -0.977 5.977 13 Si 0.953 3.047 14 H -0.273 1.273 15 H -0.289 1.289 16 H -0.250 1.250 17 H 0.100 0.900 18 H 0.053 0.947 19 H 0.052 0.948 20 H 0.092 0.908 21 H 0.056 0.944 22 H 0.070 0.930 23 H 0.105 0.895 24 H 0.099 0.901 25 H 0.371 0.629 26 H 0.262 0.738 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.437 -1.123 -5.022 16.272 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.075 4.075 2 O -0.296 6.296 3 C -0.032 4.032 4 C -0.197 4.197 5 C -0.253 4.253 6 C 0.021 3.979 7 H 0.116 0.884 8 N -0.350 5.350 9 C -0.379 4.379 10 H 0.077 0.923 11 C -0.248 4.248 12 N -0.626 5.626 13 Si 0.779 3.221 14 H -0.199 1.199 15 H -0.216 1.216 16 H -0.175 1.175 17 H 0.119 0.881 18 H 0.072 0.928 19 H 0.071 0.929 20 H 0.110 0.890 21 H 0.075 0.925 22 H 0.089 0.911 23 H 0.123 0.877 24 H 0.117 0.883 25 H 0.206 0.794 26 H 0.071 0.929 Dipole moment (debyes) X Y Z Total from point charges -15.075 -1.366 -4.938 15.921 hybrid contribution -0.116 0.963 0.310 1.018 sum -15.191 -0.403 -4.628 15.885 Atomic orbital electron populations 1.23001 0.79783 1.03766 1.00991 1.87857 1.21642 1.25450 1.94602 1.22790 0.94455 0.85301 1.00680 1.21703 1.00955 0.97136 0.99891 1.24366 1.05292 1.02276 0.93371 1.21284 0.89176 0.92271 0.95187 0.88440 1.42147 1.13167 1.15001 1.64652 1.19074 0.89702 1.01256 1.27837 0.92256 1.25526 0.97315 1.01970 0.99988 1.69871 1.15492 1.34197 1.43047 0.85456 0.78421 0.79179 0.79083 1.19892 1.21567 1.17454 0.88118 0.92824 0.92948 0.88989 0.92487 0.91107 0.87664 0.88314 0.79401 0.92931 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.45 10.04 113.37 1.14 1.59 15 2 O -0.38 -12.25 10.96 -148.98 -1.63 -13.88 15 3 C 0.01 0.35 3.03 -10.77 -0.03 0.32 15 4 C -0.14 -4.03 8.50 71.98 0.61 -3.42 15 5 C -0.21 -7.07 10.05 30.60 0.31 -6.76 15 6 C 0.13 5.50 6.55 45.02 0.29 5.80 15 7 H 0.10 4.30 8.12 -2.39 -0.02 4.28 15 8 N -0.71 -34.23 5.19 -322.82 -1.68 -35.91 15 9 C -0.25 -14.46 10.46 84.04 0.88 -13.58 15 10 H 0.06 3.79 8.05 -2.91 -0.02 3.76 15 11 C -0.06 -3.30 5.50 84.87 0.47 -2.83 15 12 N -0.98 -62.61 13.97 21.65 0.30 -62.31 15 13 Si 0.95 44.72 27.73 68.60 1.90 46.62 15 14 H -0.27 -12.41 7.11 99.48 0.71 -11.70 15 15 H -0.29 -13.62 7.11 99.48 0.71 -12.91 15 16 H -0.25 -10.51 6.52 99.48 0.65 -9.86 15 17 H 0.10 1.79 8.14 -2.39 -0.02 1.77 15 18 H 0.05 1.07 6.47 -2.39 -0.02 1.06 15 19 H 0.05 1.01 8.14 -2.38 -0.02 0.99 15 20 H 0.09 2.05 5.78 -2.38 -0.01 2.04 15 21 H 0.06 1.79 8.14 -2.39 -0.02 1.77 15 22 H 0.07 1.96 7.61 -2.39 -0.02 1.94 15 23 H 0.11 3.19 8.14 -2.39 -0.02 3.17 15 24 H 0.10 3.12 8.05 -2.39 -0.02 3.10 15 25 H 0.37 16.71 4.76 -92.70 -0.44 16.27 15 26 H 0.26 15.84 8.31 -92.71 -0.77 15.07 15 Total: -1.00 -66.86 222.43 3.23 -63.63 By element: Atomic # 1 Polarization: 20.08 SS G_CDS: 0.66 Total: 20.74 kcal Atomic # 6 Polarization: -22.56 SS G_CDS: 3.67 Total: -18.89 kcal Atomic # 7 Polarization: -96.84 SS G_CDS: -1.37 Total: -98.22 kcal Atomic # 8 Polarization: -12.25 SS G_CDS: -1.63 Total: -13.88 kcal Atomic # 14 Polarization: 44.72 SS G_CDS: 1.90 Total: 46.62 kcal Total: -66.86 3.23 -63.63 kcal The number of atoms in the molecule is 26 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000575533578.mol2 26 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 40.358 kcal (2) G-P(sol) polarization free energy of solvation -66.858 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -26.500 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.226 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.632 kcal (6) G-S(sol) free energy of system = (1) + (5) -23.274 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.12 seconds