Wall clock time and date at job start Mon Mar 30 2020 01:45:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 H 1.08999 * 110.32496 * 2 1 4 4 C 1.54912 * 110.36915 * 122.23361 * 2 1 3 5 5 C 1.55156 * 101.58273 * 155.84801 * 4 2 1 6 6 H 1.08997 * 110.71412 * 83.04223 * 5 4 2 7 7 N 1.46892 * 110.72070 * 206.13801 * 5 4 2 8 8 C 1.54321 * 102.94207 * 324.50203 * 5 4 2 9 9 N 1.47027 * 107.27496 * 22.19057 * 8 5 4 10 10 C 1.36927 * 125.64875 * 181.09245 * 9 8 5 11 11 H 1.08006 * 119.99984 * 174.10739 * 10 9 8 12 12 C 1.38813 * 120.00513 * 354.10958 * 10 9 8 13 13 N 1.31621 * 119.99500 * 6.84072 * 12 10 9 14 14 Si 1.86799 * 120.00137 * 186.84824 * 12 10 9 15 15 H 1.48492 * 109.47529 * 94.98094 * 14 12 10 16 16 H 1.48508 * 109.46780 * 214.98360 * 14 12 10 17 17 H 1.48502 * 109.47121 * 334.97607 * 14 12 10 18 18 H 1.09002 * 109.47621 * 297.76602 * 1 2 3 19 19 H 1.09007 * 109.47337 * 57.76252 * 1 2 3 20 20 H 1.08998 * 109.47220 * 177.76126 * 1 2 3 21 21 H 1.09009 * 110.99793 * 37.77438 * 4 2 1 22 22 H 1.09003 * 111.00288 * 273.92875 * 4 2 1 23 23 H 1.00894 * 111.00470 * 180.02562 * 7 5 4 24 24 H 1.00907 * 111.00172 * 303.95494 * 7 5 4 25 25 H 1.09000 * 109.88169 * 141.61097 * 8 5 4 26 26 H 1.08997 * 109.88334 * 262.77581 * 8 5 4 27 27 H 0.96996 * 119.99453 * 180.02562 * 13 12 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.9085 1.0221 0.0000 4 6 2.0691 -0.7746 1.2284 5 6 3.4778 -1.1989 0.7354 6 1 4.1951 -0.3903 0.8755 7 7 3.9262 -2.4146 1.4274 8 6 3.2493 -1.4775 -0.7651 9 7 2.0430 -0.7396 -1.1675 10 6 1.4877 -0.7398 -2.4192 11 1 0.5457 -0.2406 -2.5921 12 6 2.1354 -1.3817 -3.4658 13 7 3.2112 -2.1027 -3.2307 14 14 1.4804 -1.2219 -5.2079 15 1 2.1952 -0.1239 -5.9068 16 1 1.6977 -2.4972 -5.9372 17 1 0.0275 -0.9179 -5.1645 18 1 -0.3634 0.4787 0.9093 19 1 -0.3634 0.5482 -0.8693 20 1 -0.3633 -1.0269 -0.0401 21 1 1.4510 -1.6466 1.4425 22 1 2.1398 -0.1241 2.1003 23 1 4.8422 -2.6942 1.1102 24 1 3.9139 -2.2865 2.4282 25 1 4.1065 -1.1293 -1.3415 26 1 3.1013 -2.5454 -0.9256 27 1 3.6639 -2.5509 -3.9621 RHF calculation, no. of doubly occupied orbitals= 32 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000575589580.mol2 27 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:45:12 Heat of formation + Delta-G solvation = -2.580422 kcal Electronic energy + Delta-G solvation = -10267.471903 eV Core-core repulsion = 8445.659939 eV Total energy + Delta-G solvation = -1821.811964 eV No. of doubly occupied orbitals = 32 Molecular weight (most abundant/longest-lived isotopes) = 170.111 amu Computer time = 0.13 seconds Orbital eigenvalues (eV) -39.51642 -35.21897 -33.90700 -31.06724 -29.60710 -26.72037 -25.24470 -21.25863 -21.21164 -18.53144 -17.30723 -16.45014 -16.13531 -15.70386 -14.76183 -14.58194 -13.93269 -13.51615 -13.13931 -12.91281 -12.73644 -12.47488 -12.10581 -11.84749 -11.60099 -11.49513 -11.36487 -10.68339 -9.55462 -8.84885 -7.81697 -5.15697 1.45257 1.47573 1.56316 2.51195 3.35009 3.49414 3.88846 3.94160 4.15216 4.37490 4.50861 4.71383 4.76596 4.95425 5.07581 5.14379 5.37766 5.48921 5.54604 5.65644 5.80133 6.24122 6.38481 6.74627 7.13923 7.83313 8.48636 9.29348 Molecular weight = 170.11amu Principal moments of inertia in cm(-1) A = 0.056674 B = 0.017170 C = 0.013670 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 493.932866 B = 1630.393444 C = 2047.740097 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.137 4.137 2 C 0.140 3.860 3 H 0.032 0.968 4 C -0.107 4.107 5 C 0.069 3.931 6 H 0.043 0.957 7 N -0.841 5.841 8 C 0.195 3.805 9 N -0.622 5.622 10 C -0.232 4.232 11 H 0.086 0.914 12 C -0.073 4.073 13 N -0.953 5.953 14 Si 0.976 3.024 15 H -0.288 1.288 16 H -0.297 1.297 17 H -0.266 1.266 18 H 0.081 0.919 19 H 0.041 0.959 20 H 0.039 0.961 21 H 0.067 0.933 22 H 0.096 0.904 23 H 0.344 0.656 24 H 0.351 0.649 25 H 0.000 1.000 26 H 0.013 0.987 27 H 0.244 0.756 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.358 3.325 8.716 9.427 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.195 4.195 2 C 0.034 3.966 3 H 0.049 0.951 4 C -0.146 4.146 5 C -0.043 4.043 6 H 0.061 0.939 7 N -0.372 5.372 8 C 0.069 3.931 9 N -0.349 5.349 10 C -0.361 4.361 11 H 0.103 0.897 12 C -0.266 4.266 13 N -0.602 5.602 14 Si 0.804 3.196 15 H -0.215 1.215 16 H -0.223 1.223 17 H -0.191 1.191 18 H 0.100 0.900 19 H 0.060 0.940 20 H 0.058 0.942 21 H 0.086 0.914 22 H 0.114 0.886 23 H 0.157 0.843 24 H 0.165 0.835 25 H 0.018 0.982 26 H 0.031 0.969 27 H 0.053 0.947 Dipole moment (debyes) X Y Z Total from point charges -1.968 2.907 8.196 8.916 hybrid contribution 0.819 0.387 -0.962 1.322 sum -1.148 3.295 7.234 8.032 Atomic orbital electron populations 1.21864 0.95334 1.00888 1.01411 1.21503 0.94308 0.94063 0.86709 0.95081 1.22785 0.94837 0.99889 0.97069 1.22467 0.96329 0.90763 0.94727 0.93943 1.58530 1.33839 1.34868 1.10011 1.20824 0.88078 0.94514 0.89649 1.44830 1.29309 1.53911 1.06830 1.19457 1.03330 1.28500 0.84821 0.89663 1.25698 0.98505 1.00433 1.01955 1.70233 1.22706 1.36643 1.30651 0.85084 0.78120 0.76470 0.79881 1.21515 1.22345 1.19068 0.90013 0.94007 0.94202 0.91394 0.88598 0.84273 0.83455 0.98228 0.96912 0.94679 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -4.95 8.82 71.98 0.63 -4.31 15 2 C 0.14 5.78 3.84 45.47 0.17 5.95 15 3 H 0.03 1.28 8.14 -2.39 -0.02 1.26 15 4 C -0.11 -3.70 6.15 31.99 0.20 -3.51 15 5 C 0.07 2.65 4.09 46.10 0.19 2.84 15 6 H 0.04 1.53 8.14 -2.39 -0.02 1.51 15 7 N -0.84 -27.14 9.28 -163.78 -1.52 -28.66 15 8 C 0.20 10.19 5.13 86.73 0.44 10.64 15 9 N -0.62 -33.15 3.31 -668.37 -2.21 -35.36 15 10 C -0.23 -13.37 9.65 84.04 0.81 -12.56 15 11 H 0.09 4.67 6.81 -2.91 -0.02 4.65 15 12 C -0.07 -4.34 5.48 84.86 0.47 -3.88 15 13 N -0.95 -59.81 10.36 21.65 0.22 -59.58 15 14 Si 0.98 47.26 29.56 68.60 2.03 49.28 15 15 H -0.29 -13.73 7.11 99.48 0.71 -13.02 15 16 H -0.30 -14.46 7.11 99.48 0.71 -13.76 15 17 H -0.27 -12.08 7.11 99.48 0.71 -11.37 15 18 H 0.08 2.27 8.14 -2.39 -0.02 2.25 15 19 H 0.04 1.57 7.27 -2.38 -0.02 1.55 15 20 H 0.04 1.54 8.14 -2.39 -0.02 1.52 15 21 H 0.07 2.45 8.06 -2.38 -0.02 2.43 15 22 H 0.10 2.53 8.14 -2.39 -0.02 2.51 15 23 H 0.34 10.49 9.08 -89.70 -0.81 9.67 15 24 H 0.35 8.71 9.03 -89.69 -0.81 7.90 15 25 H 0.00 -0.03 7.38 -2.39 -0.02 -0.05 15 26 H 0.01 0.76 7.42 -2.39 -0.02 0.74 15 27 H 0.24 14.89 8.31 -92.71 -0.77 14.12 15 Total: -1.00 -68.21 221.06 0.98 -67.24 By element: Atomic # 1 Polarization: 12.38 SS G_CDS: -0.46 Total: 11.92 kcal Atomic # 6 Polarization: -7.75 SS G_CDS: 2.92 Total: -4.84 kcal Atomic # 7 Polarization: -120.10 SS G_CDS: -3.51 Total: -123.60 kcal Atomic # 14 Polarization: 47.26 SS G_CDS: 2.03 Total: 49.28 kcal Total: -68.21 0.98 -67.24 kcal The number of atoms in the molecule is 27 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000575589580.mol2 27 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 64.658 kcal (2) G-P(sol) polarization free energy of solvation -68.214 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -3.556 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.975 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.238 kcal (6) G-S(sol) free energy of system = (1) + (5) -2.580 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.13 seconds