Wall clock time and date at job start Mon Mar 30 2020 01:45:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.08998 * 109.99521 * 2 1 4 4 C 1.54328 * 109.99163 * 238.95802 * 2 1 3 5 5 C 1.55151 * 103.02379 * 218.66644 * 4 2 1 6 6 H 1.09002 * 111.03990 * 277.22645 * 5 4 2 7 7 N 1.46900 * 111.00891 * 153.38275 * 5 4 2 8 8 C 1.54917 * 101.58022 * 35.30822 * 5 4 2 9 9 N 1.47023 * 109.87786 * 121.09513 * 2 1 3 10 10 C 1.36939 * 125.64881 * 298.39224 * 9 2 1 11 11 H 1.07999 * 119.99951 * 342.77913 * 10 9 2 12 12 C 1.38811 * 119.99835 * 162.77701 * 10 9 2 13 13 N 1.31617 * 120.00485 * 332.02792 * 12 10 9 14 14 Si 1.86803 * 120.00017 * 152.02939 * 12 10 9 15 15 H 1.48497 * 109.46983 * 270.00037 * 14 12 10 16 16 H 1.48502 * 109.46862 * 29.99775 * 14 12 10 17 17 H 1.48497 * 109.47419 * 149.99648 * 14 12 10 18 18 H 1.08999 * 109.47826 * 300.36156 * 1 2 3 19 19 H 1.09000 * 109.47069 * 60.36112 * 1 2 3 20 20 H 1.08999 * 109.47288 * 180.35445 * 1 2 3 21 21 H 1.09007 * 110.84622 * 100.20211 * 4 2 1 22 22 H 1.08995 * 110.67344 * 337.05229 * 4 2 1 23 23 H 1.00901 * 111.00126 * 186.34941 * 7 5 4 24 24 H 1.00897 * 110.99521 * 310.30849 * 7 5 4 25 25 H 1.08998 * 110.36765 * 204.14975 * 8 5 4 26 26 H 1.09003 * 110.45652 * 81.87499 * 8 5 4 27 27 H 0.97005 * 119.99324 * 353.96000 * 13 12 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9027 1.0243 0.0000 4 6 2.0576 -0.7479 -1.2426 5 6 3.2863 -1.5184 -0.6914 6 1 4.1673 -0.8774 -0.6577 7 7 3.5483 -2.7276 -1.4833 8 6 2.8098 -1.8825 0.7370 9 7 2.0299 -0.7141 1.1840 10 6 1.8037 -0.3564 2.4863 11 1 1.4639 0.6416 2.7210 12 6 2.0110 -1.2764 3.5048 13 7 1.8808 -2.5640 3.2652 14 14 2.4750 -0.6871 5.2156 15 1 3.9535 -0.6044 5.3266 16 1 1.8848 0.6546 5.4540 17 1 1.9554 -1.6430 6.2263 18 1 -0.3635 0.5194 0.8867 19 1 -0.3633 0.5082 -0.8932 20 1 -0.3634 -1.0276 0.0064 21 1 2.3598 -0.0450 -2.0191 22 1 1.3067 -1.4405 -1.6225 23 1 4.2803 -3.2821 -1.0653 24 1 2.7065 -3.2709 -1.6028 25 1 3.6654 -2.0412 1.3934 26 1 2.1805 -2.7722 0.7135 27 1 1.5553 -2.8663 2.4028 RHF calculation, no. of doubly occupied orbitals= 32 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000575589583.mol2 27 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:45:15 Heat of formation + Delta-G solvation = 12.500583 kcal Electronic energy + Delta-G solvation = -10310.063898 eV Core-core repulsion = 8488.905895 eV Total energy + Delta-G solvation = -1821.158003 eV No. of doubly occupied orbitals = 32 Molecular weight (most abundant/longest-lived isotopes) = 170.111 amu Computer time = 0.14 seconds Orbital eigenvalues (eV) -38.12448 -33.63853 -32.28517 -29.16070 -27.75916 -25.16095 -23.12179 -20.03990 -19.49069 -17.30218 -15.90491 -14.55124 -14.26247 -13.78901 -13.40907 -12.83015 -12.36530 -12.00514 -11.65067 -11.23855 -10.80953 -10.70439 -10.47236 -10.10608 -10.02638 -9.91339 -9.54891 -8.39514 -8.27992 -6.92771 -6.08315 -3.12431 3.51561 3.53761 3.70134 4.58748 4.88200 5.33441 5.37566 5.44677 5.64952 5.74016 6.08072 6.09526 6.23622 6.31340 6.49890 6.55550 6.86608 6.87517 6.95923 7.13130 7.50309 7.77892 7.84405 8.50568 9.04807 9.83846 10.40274 11.24093 Molecular weight = 170.11amu Principal moments of inertia in cm(-1) A = 0.056136 B = 0.016851 C = 0.014319 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 498.665575 B = 1661.210280 C = 1954.974567 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C 0.152 3.848 3 H 0.036 0.964 4 C -0.117 4.117 5 C 0.067 3.933 6 H 0.084 0.916 7 N -0.840 5.840 8 C 0.117 3.883 9 N -0.595 5.595 10 C -0.330 4.330 11 H 0.065 0.935 12 C -0.029 4.029 13 N -0.920 5.920 14 Si 1.067 2.933 15 H -0.294 1.294 16 H -0.292 1.292 17 H -0.290 1.290 18 H 0.052 0.948 19 H 0.037 0.963 20 H 0.045 0.955 21 H 0.064 0.936 22 H 0.063 0.937 23 H 0.338 0.662 24 H 0.336 0.664 25 H 0.047 0.953 26 H 0.021 0.979 27 H 0.267 0.733 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.868 1.887 -6.408 6.736 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C 0.045 3.955 3 H 0.053 0.947 4 C -0.156 4.156 5 C -0.045 4.045 6 H 0.102 0.898 7 N -0.367 5.367 8 C -0.010 4.010 9 N -0.321 5.321 10 C -0.458 4.458 11 H 0.083 0.917 12 C -0.230 4.230 13 N -0.561 5.561 14 Si 0.897 3.103 15 H -0.222 1.222 16 H -0.219 1.219 17 H -0.217 1.217 18 H 0.071 0.929 19 H 0.056 0.944 20 H 0.065 0.935 21 H 0.083 0.917 22 H 0.082 0.918 23 H 0.150 0.850 24 H 0.148 0.852 25 H 0.065 0.935 26 H 0.039 0.961 27 H 0.078 0.922 Dipole moment (debyes) X Y Z Total from point charges 1.492 1.942 -5.369 5.901 hybrid contribution -0.888 -0.018 -0.578 1.060 sum 0.603 1.925 -5.947 6.279 Atomic orbital electron populations 1.22173 0.98166 1.00859 0.99829 1.21010 0.92356 0.95272 0.86884 0.94673 1.22634 0.96837 0.98938 0.97140 1.22764 0.97644 0.91833 0.92256 0.89790 1.59021 1.13133 1.10451 1.54140 1.22296 0.94715 0.90943 0.93089 1.44585 1.57557 1.28914 1.01072 1.19771 1.47134 0.97403 0.81520 0.91707 1.25732 1.00396 0.93995 1.02862 1.70758 1.45198 1.14702 1.25456 0.83485 0.76607 0.74578 0.75653 1.22150 1.21877 1.21688 0.92868 0.94393 0.93550 0.91728 0.91809 0.85032 0.85191 0.93480 0.96135 0.92171 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.02 9.14 37.16 0.34 -2.68 15 2 C 0.15 3.25 3.73 -66.95 -0.25 3.00 15 3 H 0.04 0.76 8.14 -51.93 -0.42 0.34 15 4 C -0.12 -2.12 6.14 -24.90 -0.15 -2.27 15 5 C 0.07 1.27 4.22 -65.56 -0.28 0.99 15 6 H 0.08 1.60 8.14 -51.93 -0.42 1.18 15 7 N -0.84 -13.33 9.42 -2.85 -0.03 -13.36 15 8 C 0.12 2.77 4.99 -2.53 -0.01 2.75 15 9 N -0.60 -15.32 3.02 -162.57 -0.49 -15.81 15 10 C -0.33 -9.46 9.62 -15.06 -0.14 -9.61 15 11 H 0.07 1.86 7.97 -52.49 -0.42 1.44 15 12 C -0.03 -0.83 5.09 -17.43 -0.09 -0.92 15 13 N -0.92 -28.21 12.93 55.49 0.72 -27.49 15 14 Si 1.07 25.88 30.00 -169.99 -5.10 20.78 15 15 H -0.29 -6.98 7.11 56.52 0.40 -6.58 15 16 H -0.29 -6.72 7.11 56.52 0.40 -6.32 15 17 H -0.29 -7.10 7.11 56.52 0.40 -6.69 15 18 H 0.05 1.14 8.02 -51.93 -0.42 0.72 15 19 H 0.04 0.63 8.14 -51.93 -0.42 0.20 15 20 H 0.05 0.96 8.14 -51.93 -0.42 0.54 15 21 H 0.06 1.04 8.14 -51.93 -0.42 0.62 15 22 H 0.06 1.11 7.68 -51.93 -0.40 0.71 15 23 H 0.34 4.96 9.07 -39.29 -0.36 4.61 15 24 H 0.34 5.08 8.84 -39.29 -0.35 4.73 15 25 H 0.05 1.22 7.95 -51.93 -0.41 0.81 15 26 H 0.02 0.52 6.80 -51.93 -0.35 0.17 15 27 H 0.27 8.22 6.05 -40.82 -0.25 7.97 15 LS Contribution 222.73 15.07 3.36 3.36 Total: -1.00 -30.81 222.73 -5.99 -36.80 By element: Atomic # 1 Polarization: 8.32 SS G_CDS: -3.86 Total: 4.46 kcal Atomic # 6 Polarization: -8.15 SS G_CDS: -0.59 Total: -8.73 kcal Atomic # 7 Polarization: -56.87 SS G_CDS: 0.20 Total: -56.67 kcal Atomic # 14 Polarization: 25.88 SS G_CDS: -5.10 Total: 20.78 kcal Total LS contribution 3.36 Total: 3.36 kcal Total: -30.81 -5.99 -36.80 kcal The number of atoms in the molecule is 27 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000575589583.mol2 27 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 49.302 kcal (2) G-P(sol) polarization free energy of solvation -30.813 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 18.490 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.989 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.802 kcal (6) G-S(sol) free energy of system = (1) + (5) 12.501 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.14 seconds