Wall clock time and date at job start Mon Mar 30 2020 01:45:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.08998 * 109.99521 * 2 1 4 4 C 1.54328 * 109.99163 * 238.95802 * 2 1 3 5 5 C 1.55151 * 103.02379 * 218.66644 * 4 2 1 6 6 H 1.09002 * 111.03990 * 277.22645 * 5 4 2 7 7 N 1.46900 * 111.00891 * 153.38275 * 5 4 2 8 8 C 1.54917 * 101.58022 * 35.30822 * 5 4 2 9 9 N 1.47023 * 109.87786 * 121.09513 * 2 1 3 10 10 C 1.36939 * 125.64881 * 298.39224 * 9 2 1 11 11 H 1.07999 * 119.99951 * 342.77913 * 10 9 2 12 12 C 1.38811 * 119.99835 * 162.77701 * 10 9 2 13 13 N 1.31617 * 120.00485 * 332.02792 * 12 10 9 14 14 Si 1.86803 * 120.00017 * 152.02939 * 12 10 9 15 15 H 1.48497 * 109.46983 * 270.00037 * 14 12 10 16 16 H 1.48502 * 109.46862 * 29.99775 * 14 12 10 17 17 H 1.48497 * 109.47419 * 149.99648 * 14 12 10 18 18 H 1.08999 * 109.47826 * 300.36156 * 1 2 3 19 19 H 1.09000 * 109.47069 * 60.36112 * 1 2 3 20 20 H 1.08999 * 109.47288 * 180.35445 * 1 2 3 21 21 H 1.09007 * 110.84622 * 100.20211 * 4 2 1 22 22 H 1.08995 * 110.67344 * 337.05229 * 4 2 1 23 23 H 1.00901 * 111.00126 * 186.34941 * 7 5 4 24 24 H 1.00897 * 110.99521 * 310.30849 * 7 5 4 25 25 H 1.08998 * 110.36765 * 204.14975 * 8 5 4 26 26 H 1.09003 * 110.45652 * 81.87499 * 8 5 4 27 27 H 0.97005 * 119.99324 * 353.96000 * 13 12 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9027 1.0243 0.0000 4 6 2.0576 -0.7479 -1.2426 5 6 3.2863 -1.5184 -0.6914 6 1 4.1673 -0.8774 -0.6577 7 7 3.5483 -2.7276 -1.4833 8 6 2.8098 -1.8825 0.7370 9 7 2.0299 -0.7141 1.1840 10 6 1.8037 -0.3564 2.4863 11 1 1.4639 0.6416 2.7210 12 6 2.0110 -1.2764 3.5048 13 7 1.8808 -2.5640 3.2652 14 14 2.4750 -0.6871 5.2156 15 1 3.9535 -0.6044 5.3266 16 1 1.8848 0.6546 5.4540 17 1 1.9554 -1.6430 6.2263 18 1 -0.3635 0.5194 0.8867 19 1 -0.3633 0.5082 -0.8932 20 1 -0.3634 -1.0276 0.0064 21 1 2.3598 -0.0450 -2.0191 22 1 1.3067 -1.4405 -1.6225 23 1 4.2803 -3.2821 -1.0653 24 1 2.7065 -3.2709 -1.6028 25 1 3.6654 -2.0412 1.3934 26 1 2.1805 -2.7722 0.7135 27 1 1.5553 -2.8663 2.4028 RHF calculation, no. of doubly occupied orbitals= 32 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000575589583.mol2 27 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:45:15 Heat of formation + Delta-G solvation = -9.959768 kcal Electronic energy + Delta-G solvation = -10311.037852 eV Core-core repulsion = 8488.905895 eV Total energy + Delta-G solvation = -1822.131957 eV No. of doubly occupied orbitals = 32 Molecular weight (most abundant/longest-lived isotopes) = 170.111 amu Computer time = 0.13 seconds Orbital eigenvalues (eV) -39.85243 -35.44310 -34.08936 -31.05698 -29.40124 -27.00873 -25.05531 -21.65269 -21.33085 -19.35004 -17.51916 -16.24126 -15.87712 -15.71398 -15.32371 -14.53311 -13.95707 -13.84965 -13.34229 -13.02815 -12.59687 -12.51235 -12.16046 -11.92278 -11.83314 -11.63526 -11.45457 -10.54307 -9.74850 -9.02591 -8.34073 -5.34844 1.54496 1.62229 1.79752 2.61550 3.15003 3.33094 3.76553 3.81440 4.05782 4.11477 4.36448 4.51349 4.58229 4.80034 4.88825 4.98091 5.01376 5.21982 5.23489 5.48086 5.69257 6.09762 6.30624 6.50241 6.90618 7.69820 8.29137 8.97520 Molecular weight = 170.11amu Principal moments of inertia in cm(-1) A = 0.056136 B = 0.016851 C = 0.014319 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 498.665575 B = 1661.210280 C = 1954.974567 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C 0.139 3.861 3 H 0.037 0.963 4 C -0.104 4.104 5 C 0.084 3.916 6 H 0.086 0.914 7 N -0.826 5.826 8 C 0.123 3.877 9 N -0.618 5.618 10 C -0.336 4.336 11 H 0.058 0.942 12 C -0.083 4.083 13 N -0.948 5.948 14 Si 1.117 2.883 15 H -0.286 1.286 16 H -0.271 1.271 17 H -0.294 1.294 18 H 0.030 0.970 19 H 0.078 0.922 20 H 0.031 0.969 21 H 0.096 0.904 22 H 0.073 0.927 23 H 0.346 0.654 24 H 0.343 0.657 25 H 0.011 0.989 26 H 0.001 0.999 27 H 0.253 0.747 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.088 2.735 -7.583 8.134 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C 0.033 3.967 3 H 0.055 0.945 4 C -0.142 4.142 5 C -0.029 4.029 6 H 0.104 0.896 7 N -0.354 5.354 8 C -0.005 4.005 9 N -0.344 5.344 10 C -0.465 4.465 11 H 0.076 0.924 12 C -0.279 4.279 13 N -0.591 5.591 14 Si 0.942 3.058 15 H -0.212 1.212 16 H -0.196 1.196 17 H -0.220 1.220 18 H 0.049 0.951 19 H 0.097 0.903 20 H 0.051 0.949 21 H 0.114 0.886 22 H 0.092 0.908 23 H 0.159 0.841 24 H 0.156 0.844 25 H 0.029 0.971 26 H 0.018 0.982 27 H 0.063 0.937 Dipole moment (debyes) X Y Z Total from point charges 1.708 2.804 -6.587 7.360 hybrid contribution -0.974 -0.259 -0.274 1.044 sum 0.735 2.545 -6.861 7.355 Atomic orbital electron populations 1.22062 0.97119 1.00160 1.00748 1.21295 0.93256 0.95351 0.86795 0.94484 1.22586 0.96288 0.99216 0.96110 1.22568 0.97988 0.93062 0.89266 0.89588 1.59019 1.13709 1.10005 1.52645 1.22276 0.92825 0.89850 0.95524 1.44871 1.58395 1.29654 1.01501 1.20002 1.46113 0.96999 0.83383 0.92377 1.27117 1.00508 0.93715 1.06545 1.70878 1.47572 1.15743 1.24936 0.82818 0.76703 0.74940 0.71381 1.21249 1.19641 1.22018 0.95110 0.90301 0.94949 0.88592 0.90788 0.84129 0.84388 0.97063 0.98159 0.93667 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -5.46 9.14 71.98 0.66 -4.80 15 2 C 0.14 5.73 3.73 45.34 0.17 5.90 15 3 H 0.04 1.53 8.14 -2.39 -0.02 1.51 15 4 C -0.10 -3.43 6.14 31.78 0.20 -3.24 15 5 C 0.08 3.02 4.22 46.31 0.20 3.21 15 6 H 0.09 3.09 8.14 -2.39 -0.02 3.07 15 7 N -0.83 -24.27 9.42 -162.92 -1.53 -25.80 15 8 C 0.12 5.87 4.99 86.86 0.43 6.30 15 9 N -0.62 -31.94 3.02 -668.24 -2.02 -33.96 15 10 C -0.34 -19.47 9.62 84.03 0.81 -18.66 15 11 H 0.06 3.37 7.97 -2.91 -0.02 3.34 15 12 C -0.08 -4.91 5.09 84.86 0.43 -4.48 15 13 N -0.95 -59.57 12.93 21.65 0.28 -59.29 15 14 Si 1.12 52.56 30.00 68.60 2.06 54.61 15 15 H -0.29 -12.95 7.11 99.48 0.71 -12.25 15 16 H -0.27 -11.71 7.11 99.48 0.71 -11.00 15 17 H -0.29 -13.88 7.11 99.48 0.71 -13.17 15 18 H 0.03 1.28 8.02 -2.39 -0.02 1.26 15 19 H 0.08 2.37 8.14 -2.39 -0.02 2.35 15 20 H 0.03 1.30 8.14 -2.39 -0.02 1.28 15 21 H 0.10 2.65 8.14 -2.38 -0.02 2.63 15 22 H 0.07 2.32 7.68 -2.39 -0.02 2.30 15 23 H 0.35 9.53 9.07 -89.69 -0.81 8.71 15 24 H 0.34 9.57 8.84 -89.70 -0.79 8.78 15 25 H 0.01 0.59 7.95 -2.39 -0.02 0.57 15 26 H 0.00 0.04 6.80 -2.39 -0.02 0.02 15 27 H 0.25 16.14 6.05 -92.70 -0.56 15.58 15 Total: -1.00 -66.66 222.73 1.43 -65.22 By element: Atomic # 1 Polarization: 15.23 SS G_CDS: -0.24 Total: 14.99 kcal Atomic # 6 Polarization: -18.66 SS G_CDS: 2.89 Total: -15.77 kcal Atomic # 7 Polarization: -115.78 SS G_CDS: -3.27 Total: -119.06 kcal Atomic # 14 Polarization: 52.56 SS G_CDS: 2.06 Total: 54.61 kcal Total: -66.66 1.43 -65.22 kcal The number of atoms in the molecule is 27 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000575589583.mol2 27 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 55.264 kcal (2) G-P(sol) polarization free energy of solvation -66.658 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -11.395 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.435 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.224 kcal (6) G-S(sol) free energy of system = (1) + (5) -9.960 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.13 seconds