Wall clock time and date at job start Mon Mar 30 2020 01:41:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31514 * 1 3 3 Si 1.86801 * 119.99962 * 2 1 4 4 H 1.48504 * 109.46713 * 239.99535 * 3 2 1 5 5 H 1.48499 * 109.47226 * 359.97438 * 3 2 1 6 6 H 1.48500 * 109.46905 * 119.99951 * 3 2 1 7 7 C 1.37877 * 119.99907 * 179.97438 * 2 1 3 8 8 H 1.07995 * 120.00383 * 180.02562 * 7 2 1 9 9 C 1.50702 * 119.99892 * 0.02562 * 7 2 1 10 10 C 1.53124 * 109.52429 * 60.31386 * 9 7 2 11 11 C 1.53035 * 109.27475 * 177.55754 * 10 9 7 12 12 N 1.46846 * 109.52744 * 300.82106 * 11 10 9 13 13 N 1.45403 * 110.99794 * 185.84244 * 12 11 10 14 14 C 1.46846 * 111.19780 * 61.74478 * 12 11 10 15 15 C 1.53032 * 109.52443 * 298.25976 * 14 12 11 16 16 H 0.97003 * 119.99721 * 0.02562 * 1 2 3 17 17 H 1.09001 * 109.57406 * 300.15598 * 9 7 2 18 18 H 1.08993 * 109.50112 * 57.62148 * 10 9 7 19 19 H 1.08992 * 109.50394 * 297.49896 * 10 9 7 20 20 H 1.09008 * 109.45841 * 180.80263 * 11 10 9 21 21 H 1.09003 * 109.46290 * 60.84246 * 11 10 9 22 22 H 1.00901 * 110.99611 * 180.02562 * 13 12 11 23 23 H 1.00903 * 111.00122 * 303.94833 * 13 12 11 24 24 H 1.09009 * 109.46169 * 58.27021 * 14 12 11 25 25 H 1.08995 * 109.46669 * 178.25121 * 14 12 11 26 26 H 1.09001 * 109.50949 * 179.12117 * 15 14 12 27 27 H 1.09005 * 109.50313 * 299.19974 * 15 14 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 3.1030 1.6963 -1.2125 5 1 1.2842 2.7465 -0.0006 6 1 3.1029 1.6964 1.2125 7 6 2.0045 -1.1941 0.0005 8 1 3.0845 -1.1941 0.0010 9 6 1.2510 -2.4992 0.0005 10 6 0.3766 -2.5852 -1.2536 11 6 -0.3390 -3.9377 -1.2786 12 7 0.6547 -5.0189 -1.2778 13 7 0.0150 -6.3146 -1.4394 14 6 1.4751 -4.9851 -0.0603 15 6 2.2449 -3.6640 0.0012 16 1 -0.4850 0.8401 -0.0004 17 1 0.6212 -2.5572 0.8883 18 1 1.0023 -2.4881 -2.1407 19 1 -0.3614 -1.7833 -1.2384 20 1 -0.9514 -4.0079 -2.1777 21 1 -0.9752 -4.0284 -0.3981 22 1 0.6978 -7.0575 -1.4384 23 1 -0.6831 -6.4647 -0.7265 24 1 0.8304 -5.0709 0.8145 25 1 2.1804 -5.8160 -0.0745 26 1 2.8417 -3.6325 0.9127 27 1 2.9005 -3.5841 -0.8660 RHF calculation, no. of doubly occupied orbitals= 32 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000584636466.mol2 27 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:41:34 Heat of formation + Delta-G solvation = 13.736265 kcal Electronic energy + Delta-G solvation = -10171.978392 eV Core-core repulsion = 8350.873972 eV Total energy + Delta-G solvation = -1821.104419 eV No. of doubly occupied orbitals = 32 Molecular weight (most abundant/longest-lived isotopes) = 170.111 amu Computer time = 0.11 seconds Orbital eigenvalues (eV) -37.96925 -34.02993 -31.65313 -29.89347 -28.13142 -24.78207 -22.10623 -21.47902 -18.66516 -16.45007 -15.67599 -15.39772 -14.50979 -13.90441 -13.24752 -12.64975 -12.48956 -12.29997 -11.58022 -10.99907 -10.81633 -10.62187 -10.28233 -10.08008 -9.50328 -9.11033 -9.01192 -8.63389 -8.31097 -7.92752 -5.98249 -4.03870 3.33342 3.37860 3.40658 4.02137 4.45119 5.16734 5.32158 5.64590 5.81739 6.02944 6.16763 6.29516 6.56067 6.59590 6.77235 6.98607 7.07133 7.30538 7.44928 7.61033 7.79494 7.96586 8.09831 8.14576 8.45931 8.99307 9.60694 11.08291 Molecular weight = 170.11amu Principal moments of inertia in cm(-1) A = 0.096472 B = 0.013016 C = 0.012001 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 290.168710 B = 2150.607050 C = 2332.639045 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.893 5.893 2 C 0.061 3.939 3 Si 0.892 3.108 4 H -0.277 1.277 5 H -0.288 1.288 6 H -0.278 1.278 7 C -0.513 4.513 8 H 0.055 0.945 9 C 0.046 3.954 10 C -0.104 4.104 11 C 0.055 3.945 12 N -0.349 5.349 13 N -0.678 5.678 14 C 0.015 3.985 15 C -0.103 4.103 16 H 0.261 0.739 17 H 0.021 0.979 18 H 0.047 0.953 19 H 0.098 0.902 20 H 0.068 0.932 21 H 0.022 0.978 22 H 0.344 0.656 23 H 0.304 0.696 24 H 0.024 0.976 25 H 0.058 0.942 26 H 0.052 0.948 27 H 0.060 0.940 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.579 -6.971 -0.147 6.997 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.532 5.532 2 C -0.140 4.140 3 Si 0.720 3.280 4 H -0.202 1.202 5 H -0.213 1.213 6 H -0.204 1.204 7 C -0.551 4.551 8 H 0.073 0.927 9 C 0.027 3.973 10 C -0.143 4.143 11 C -0.073 4.073 12 N -0.167 5.167 13 N -0.297 5.297 14 C -0.115 4.115 15 C -0.142 4.142 16 H 0.070 0.930 17 H 0.039 0.961 18 H 0.066 0.934 19 H 0.116 0.884 20 H 0.086 0.914 21 H 0.040 0.960 22 H 0.156 0.844 23 H 0.116 0.884 24 H 0.042 0.958 25 H 0.077 0.923 26 H 0.070 0.930 27 H 0.078 0.922 Dipole moment (debyes) X Y Z Total from point charges 0.476 -6.505 -1.268 6.644 hybrid contribution 0.284 0.466 1.801 1.882 sum 0.760 -6.039 0.533 6.110 Atomic orbital electron populations 1.69860 1.05907 1.26535 1.50857 1.24975 0.94863 0.99082 0.95078 0.86659 0.79603 0.83142 0.78598 1.20228 1.21324 1.20370 1.21149 0.92891 0.90562 1.50480 0.92689 1.18720 0.92713 0.91830 0.94010 1.21706 1.00408 0.92612 0.99558 1.22421 0.93379 0.92051 0.99424 1.66121 1.19336 0.96381 1.34849 1.63021 1.15236 1.00239 1.51190 1.22941 0.96936 1.00268 0.91311 1.21649 0.98780 0.93142 1.00618 0.92956 0.96128 0.93431 0.88428 0.91392 0.95958 0.84398 0.88375 0.95797 0.92314 0.92958 0.92164 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -25.52 11.37 55.43 0.63 -24.89 15 2 C 0.06 1.69 5.31 -17.82 -0.09 1.60 15 3 Si 0.89 21.34 29.54 -169.99 -5.02 16.32 15 4 H -0.28 -6.56 7.11 56.52 0.40 -6.16 15 5 H -0.29 -6.82 7.11 56.52 0.40 -6.42 15 6 H -0.28 -6.58 7.11 56.52 0.40 -6.18 15 7 C -0.51 -14.19 8.56 -34.44 -0.29 -14.48 15 8 H 0.05 1.50 7.74 -52.49 -0.41 1.09 15 9 C 0.05 1.15 2.16 -91.64 -0.20 0.96 15 10 C -0.10 -2.50 5.12 -26.65 -0.14 -2.64 15 11 C 0.06 1.15 5.81 -3.84 -0.02 1.13 15 12 N -0.35 -6.70 5.53 -113.82 -0.63 -7.33 15 13 N -0.68 -10.62 9.77 60.35 0.59 -10.03 15 14 C 0.02 0.28 5.82 -3.84 -0.02 0.26 15 15 C -0.10 -2.21 5.32 -26.65 -0.14 -2.35 15 16 H 0.26 7.12 8.31 -40.82 -0.34 6.78 15 17 H 0.02 0.57 8.14 -51.93 -0.42 0.14 15 18 H 0.05 1.18 8.14 -51.93 -0.42 0.75 15 19 H 0.10 2.59 6.17 -51.93 -0.32 2.27 15 20 H 0.07 1.36 8.14 -51.92 -0.42 0.93 15 21 H 0.02 0.46 8.14 -51.93 -0.42 0.04 15 22 H 0.34 4.56 9.08 -174.65 -1.59 2.98 15 23 H 0.30 4.32 9.10 -174.65 -1.59 2.73 15 24 H 0.02 0.44 8.14 -51.92 -0.42 0.02 15 25 H 0.06 0.95 8.12 -51.93 -0.42 0.53 15 26 H 0.05 1.07 8.14 -51.93 -0.42 0.65 15 27 H 0.06 1.31 8.14 -51.93 -0.42 0.89 15 LS Contribution 221.17 15.07 3.33 3.33 Total: -1.00 -28.65 221.17 -8.43 -37.08 By element: Atomic # 1 Polarization: 7.46 SS G_CDS: -6.42 Total: 1.05 kcal Atomic # 6 Polarization: -14.62 SS G_CDS: -0.91 Total: -15.53 kcal Atomic # 7 Polarization: -42.83 SS G_CDS: 0.59 Total: -42.24 kcal Atomic # 14 Polarization: 21.34 SS G_CDS: -5.02 Total: 16.32 kcal Total LS contribution 3.33 Total: 3.33 kcal Total: -28.65 -8.43 -37.08 kcal The number of atoms in the molecule is 27 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000584636466.mol2 27 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 50.812 kcal (2) G-P(sol) polarization free energy of solvation -28.648 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 22.164 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.428 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.076 kcal (6) G-S(sol) free energy of system = (1) + (5) 13.736 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.11 seconds