Wall clock time and date at job start Mon Mar 30 2020 01:41:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31514 * 1 3 3 Si 1.86801 * 119.99962 * 2 1 4 4 H 1.48504 * 109.46713 * 239.99535 * 3 2 1 5 5 H 1.48499 * 109.47226 * 359.97438 * 3 2 1 6 6 H 1.48500 * 109.46905 * 119.99951 * 3 2 1 7 7 C 1.37877 * 119.99907 * 179.97438 * 2 1 3 8 8 H 1.07995 * 120.00383 * 180.02562 * 7 2 1 9 9 C 1.50702 * 119.99892 * 0.02562 * 7 2 1 10 10 C 1.53124 * 109.52429 * 60.31386 * 9 7 2 11 11 C 1.53035 * 109.27475 * 177.55754 * 10 9 7 12 12 N 1.46846 * 109.52744 * 300.82106 * 11 10 9 13 13 N 1.45403 * 110.99794 * 185.84244 * 12 11 10 14 14 C 1.46846 * 111.19780 * 61.74478 * 12 11 10 15 15 C 1.53032 * 109.52443 * 298.25976 * 14 12 11 16 16 H 0.97003 * 119.99721 * 0.02562 * 1 2 3 17 17 H 1.09001 * 109.57406 * 300.15598 * 9 7 2 18 18 H 1.08993 * 109.50112 * 57.62148 * 10 9 7 19 19 H 1.08992 * 109.50394 * 297.49896 * 10 9 7 20 20 H 1.09008 * 109.45841 * 180.80263 * 11 10 9 21 21 H 1.09003 * 109.46290 * 60.84246 * 11 10 9 22 22 H 1.00901 * 110.99611 * 180.02562 * 13 12 11 23 23 H 1.00903 * 111.00122 * 303.94833 * 13 12 11 24 24 H 1.09009 * 109.46169 * 58.27021 * 14 12 11 25 25 H 1.08995 * 109.46669 * 178.25121 * 14 12 11 26 26 H 1.09001 * 109.50949 * 179.12117 * 15 14 12 27 27 H 1.09005 * 109.50313 * 299.19974 * 15 14 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 3.1030 1.6963 -1.2125 5 1 1.2842 2.7465 -0.0006 6 1 3.1029 1.6964 1.2125 7 6 2.0045 -1.1941 0.0005 8 1 3.0845 -1.1941 0.0010 9 6 1.2510 -2.4992 0.0005 10 6 0.3766 -2.5852 -1.2536 11 6 -0.3390 -3.9377 -1.2786 12 7 0.6547 -5.0189 -1.2778 13 7 0.0150 -6.3146 -1.4394 14 6 1.4751 -4.9851 -0.0603 15 6 2.2449 -3.6640 0.0012 16 1 -0.4850 0.8401 -0.0004 17 1 0.6212 -2.5572 0.8883 18 1 1.0023 -2.4881 -2.1407 19 1 -0.3614 -1.7833 -1.2384 20 1 -0.9514 -4.0079 -2.1777 21 1 -0.9752 -4.0284 -0.3981 22 1 0.6978 -7.0575 -1.4384 23 1 -0.6831 -6.4647 -0.7265 24 1 0.8304 -5.0709 0.8145 25 1 2.1804 -5.8160 -0.0745 26 1 2.8417 -3.6325 0.9127 27 1 2.9005 -3.5841 -0.8660 RHF calculation, no. of doubly occupied orbitals= 32 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000584636466.mol2 27 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:41:34 Heat of formation + Delta-G solvation = -6.154051 kcal Electronic energy + Delta-G solvation = -10172.840901 eV Core-core repulsion = 8350.873972 eV Total energy + Delta-G solvation = -1821.966928 eV No. of doubly occupied orbitals = 32 Molecular weight (most abundant/longest-lived isotopes) = 170.111 amu Computer time = 0.13 seconds Orbital eigenvalues (eV) -39.61781 -35.84437 -33.53781 -31.59450 -29.79101 -26.70770 -23.80992 -23.24989 -20.46123 -18.48047 -17.28929 -16.78419 -16.46357 -15.49721 -14.96484 -14.48168 -14.30056 -14.06036 -13.21521 -12.90233 -12.71530 -12.48965 -12.11291 -11.97995 -11.44469 -10.92877 -10.81437 -10.41734 -10.22597 -9.38415 -8.09404 -6.23063 1.42664 1.44221 1.51782 2.43750 2.59289 3.17998 3.77787 4.13210 4.28614 4.36370 4.59893 4.66556 4.80108 4.89039 5.00154 5.19078 5.23008 5.50959 5.60386 5.79184 5.96677 6.11882 6.37223 6.43396 6.71511 6.87972 7.45102 8.95607 Molecular weight = 170.11amu Principal moments of inertia in cm(-1) A = 0.096472 B = 0.013016 C = 0.012001 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 290.168710 B = 2150.607050 C = 2332.639045 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.918 5.918 2 C 0.012 3.988 3 Si 0.956 3.044 4 H -0.271 1.271 5 H -0.284 1.284 6 H -0.271 1.271 7 C -0.537 4.537 8 H 0.053 0.947 9 C 0.042 3.958 10 C -0.095 4.095 11 C 0.068 3.932 12 N -0.362 5.362 13 N -0.671 5.671 14 C 0.022 3.978 15 C -0.098 4.098 16 H 0.261 0.739 17 H -0.010 1.010 18 H 0.034 0.966 19 H 0.068 0.932 20 H 0.076 0.924 21 H 0.019 0.981 22 H 0.361 0.639 23 H 0.318 0.682 24 H 0.024 0.976 25 H 0.092 0.908 26 H 0.058 0.942 27 H 0.055 0.945 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.189 -7.882 -0.265 7.975 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.558 5.558 2 C -0.186 4.186 3 Si 0.781 3.219 4 H -0.196 1.196 5 H -0.209 1.209 6 H -0.197 1.197 7 C -0.575 4.575 8 H 0.071 0.929 9 C 0.023 3.977 10 C -0.134 4.134 11 C -0.061 4.061 12 N -0.180 5.180 13 N -0.293 5.293 14 C -0.108 4.108 15 C -0.137 4.137 16 H 0.070 0.930 17 H 0.008 0.992 18 H 0.053 0.947 19 H 0.086 0.914 20 H 0.094 0.906 21 H 0.037 0.963 22 H 0.175 0.825 23 H 0.131 0.869 24 H 0.042 0.958 25 H 0.110 0.890 26 H 0.077 0.923 27 H 0.073 0.927 Dipole moment (debyes) X Y Z Total from point charges 1.099 -7.438 -1.384 7.645 hybrid contribution 0.079 0.695 1.843 1.971 sum 1.179 -6.743 0.459 6.861 Atomic orbital electron populations 1.69999 1.07200 1.27278 1.51296 1.25762 0.95711 1.02461 0.94687 0.85651 0.78414 0.78998 0.78833 1.19644 1.20913 1.19653 1.21545 0.93110 0.92119 1.50730 0.92864 1.18697 0.93188 0.92797 0.93016 1.21456 0.99450 0.94102 0.98420 1.22132 0.93246 0.91040 0.99679 1.66010 1.19191 0.97584 1.35167 1.62887 1.15738 0.99028 1.51680 1.22885 0.97184 0.99499 0.91196 1.21517 0.98073 0.93378 1.00696 0.92965 0.99173 0.94700 0.91357 0.90566 0.96271 0.82478 0.86942 0.95754 0.89004 0.92325 0.92660 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -53.44 11.37 21.45 0.24 -53.19 15 2 C 0.01 0.69 5.31 84.65 0.45 1.14 15 3 Si 0.96 43.87 29.54 68.60 2.03 45.90 15 4 H -0.27 -12.14 7.11 99.48 0.71 -11.43 15 5 H -0.28 -12.75 7.11 99.48 0.71 -12.04 15 6 H -0.27 -12.09 7.11 99.48 0.71 -11.38 15 7 C -0.54 -30.07 8.56 25.60 0.22 -29.85 15 8 H 0.05 2.91 7.74 -2.91 -0.02 2.89 15 9 C 0.04 2.12 2.16 -11.46 -0.02 2.10 15 10 C -0.09 -4.65 5.12 30.65 0.16 -4.50 15 11 C 0.07 2.75 5.81 86.33 0.50 3.25 15 12 N -0.36 -13.08 5.53 -514.00 -2.84 -15.92 15 13 N -0.67 -18.87 9.77 37.02 0.36 -18.51 15 14 C 0.02 0.75 5.82 86.32 0.50 1.25 15 15 C -0.10 -4.10 5.32 30.65 0.16 -3.93 15 16 H 0.26 14.48 8.31 -92.71 -0.77 13.71 15 17 H -0.01 -0.56 8.14 -2.39 -0.02 -0.58 15 18 H 0.03 1.74 8.14 -2.39 -0.02 1.72 15 19 H 0.07 3.73 6.17 -2.39 -0.01 3.72 15 20 H 0.08 2.95 8.14 -2.38 -0.02 2.93 15 21 H 0.02 0.78 8.14 -2.39 -0.02 0.76 15 22 H 0.36 8.18 9.08 -204.84 -1.86 6.32 15 23 H 0.32 7.99 9.10 -204.84 -1.86 6.12 15 24 H 0.02 0.85 8.14 -2.38 -0.02 0.83 15 25 H 0.09 2.61 8.12 -2.39 -0.02 2.59 15 26 H 0.06 2.34 8.14 -2.39 -0.02 2.32 15 27 H 0.05 2.35 8.14 -2.38 -0.02 2.33 15 Total: -1.00 -60.65 221.17 -0.81 -61.46 By element: Atomic # 1 Polarization: 13.37 SS G_CDS: -2.57 Total: 10.80 kcal Atomic # 6 Polarization: -32.51 SS G_CDS: 1.97 Total: -30.54 kcal Atomic # 7 Polarization: -85.38 SS G_CDS: -2.24 Total: -87.62 kcal Atomic # 14 Polarization: 43.87 SS G_CDS: 2.03 Total: 45.90 kcal Total: -60.65 -0.81 -61.46 kcal The number of atoms in the molecule is 27 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000584636466.mol2 27 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 55.304 kcal (2) G-P(sol) polarization free energy of solvation -60.645 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -5.341 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.813 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.458 kcal (6) G-S(sol) free energy of system = (1) + (5) -6.154 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.13 seconds