Wall clock time and date at job start Mon Mar 30 2020 01:56:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.08998 * 110.57621 * 2 1 4 4 C 1.54093 * 110.51671 * 237.29851 * 2 1 3 5 5 N 1.47097 * 103.77975 * 241.36571 * 4 2 1 6 6 C 1.37198 * 125.55647 * 180.02562 * 5 4 2 7 7 H 1.07997 * 119.99734 * 326.62407 * 6 5 4 8 8 C 1.38881 * 120.00006 * 146.63063 * 6 5 4 9 9 N 1.31469 * 119.99876 * 334.80837 * 8 6 5 10 10 Si 1.86799 * 120.00246 * 154.80279 * 8 6 5 11 11 H 1.48512 * 109.46756 * 0.02562 * 10 8 6 12 12 H 1.48496 * 109.47524 * 240.00305 * 10 8 6 13 13 H 1.48502 * 109.47235 * 119.99769 * 10 8 6 14 14 C 1.34005 * 108.88273 * 0.27036 * 5 4 2 15 15 O 1.21507 * 123.07336 * 179.73499 * 14 5 4 16 16 O 1.33797 * 113.84915 * 359.52630 * 14 5 4 17 17 H 1.09002 * 109.47165 * 182.69778 * 1 2 3 18 18 H 1.09000 * 109.47514 * 302.69865 * 1 2 3 19 19 H 1.09003 * 109.47419 * 62.70247 * 1 2 3 20 20 H 1.09003 * 110.56253 * 122.79553 * 4 2 1 21 21 H 1.08998 * 110.56719 * 359.94231 * 4 2 1 22 22 H 0.96992 * 120.00181 * 354.83603 * 9 8 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9131 1.0204 0.0000 4 6 2.0701 -0.7797 -1.2144 5 7 2.8341 -1.8825 -0.6112 6 6 3.5095 -2.8566 -1.3020 7 1 3.1285 -3.2097 -2.2489 8 6 4.6829 -3.3887 -0.7836 9 7 5.4115 -2.6829 0.0527 10 14 5.2259 -5.1074 -1.2744 11 1 4.2390 -5.6869 -2.2209 12 1 5.3135 -5.9634 -0.0642 13 1 6.5571 -5.0379 -1.9290 14 6 2.7584 -1.7836 0.7230 15 8 3.2956 -2.5698 1.4778 16 8 2.0407 -0.7374 1.1481 17 1 -0.3633 -1.0265 0.0484 18 1 -0.3634 0.5551 0.8648 19 1 -0.3634 0.4713 -0.9132 20 1 2.7220 -0.1468 -1.8166 21 1 1.2485 -1.1675 -1.8166 22 1 5.1705 -1.7643 0.2497 RHF calculation, no. of doubly occupied orbitals= 31 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000585892311.mol2 22 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:56:44 Heat of formation + Delta-G solvation = -68.507084 kcal Electronic energy + Delta-G solvation = -10264.257488 eV Core-core repulsion = 8206.034973 eV Total energy + Delta-G solvation = -2058.222515 eV No. of doubly occupied orbitals = 31 Molecular weight (most abundant/longest-lived isotopes) = 171.068 amu Computer time = 0.10 seconds Orbital eigenvalues (eV) -40.39018 -35.99772 -34.51519 -31.87337 -30.95669 -26.04867 -24.35791 -21.73649 -20.65222 -17.83324 -16.10158 -15.68512 -15.28406 -13.97143 -13.65666 -13.37999 -12.94945 -12.83430 -12.38958 -11.76337 -11.38983 -10.97652 -10.75119 -10.13720 -9.93037 -9.70659 -9.05398 -8.73700 -7.66772 -6.50931 -3.93021 3.40270 3.50901 3.60524 3.87829 4.18542 4.42738 4.86879 4.92521 5.11494 5.27662 5.37285 5.74059 5.86593 6.00364 6.07865 6.32389 6.65760 7.87978 8.29993 8.78624 8.98216 9.44035 9.98894 10.81837 Molecular weight = 171.07amu Principal moments of inertia in cm(-1) A = 0.086611 B = 0.016690 C = 0.015317 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 323.207210 B = 1677.285554 C = 1827.579889 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.154 4.154 2 C 0.063 3.937 3 H 0.097 0.903 4 C 0.059 3.941 5 N -0.467 5.467 6 C -0.423 4.423 7 H 0.083 0.917 8 C 0.024 3.976 9 N -0.833 5.833 10 Si 1.088 2.912 11 H -0.285 1.285 12 H -0.281 1.281 13 H -0.287 1.287 14 C 0.575 3.425 15 O -0.529 6.529 16 O -0.351 6.351 17 H 0.064 0.936 18 H 0.065 0.935 19 H 0.073 0.927 20 H 0.072 0.928 21 H 0.072 0.928 22 H 0.274 0.726 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.019 4.649 -4.245 9.428 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.211 4.211 2 C 0.006 3.994 3 H 0.115 0.885 4 C -0.065 4.065 5 N -0.203 5.203 6 C -0.548 4.548 7 H 0.101 0.899 8 C -0.190 4.190 9 N -0.464 5.464 10 Si 0.914 3.086 11 H -0.211 1.211 12 H -0.207 1.207 13 H -0.214 1.214 14 C 0.329 3.671 15 O -0.415 6.415 16 O -0.264 6.264 17 H 0.083 0.917 18 H 0.084 0.916 19 H 0.092 0.908 20 H 0.090 0.910 21 H 0.090 0.910 22 H 0.085 0.915 Dipole moment (debyes) X Y Z Total from point charges -5.639 3.180 -3.351 7.290 hybrid contribution -1.253 1.450 -0.475 1.974 sum -6.892 4.630 -3.827 9.142 Atomic orbital electron populations 1.22044 0.93384 1.03245 1.02472 1.23576 0.95261 0.96168 0.84365 0.88480 1.22766 0.97163 0.90941 0.95592 1.43533 1.48808 1.24713 1.03259 1.19768 1.08619 1.17716 1.08688 0.89891 1.26380 0.91566 1.05327 0.95685 1.70481 1.35417 1.10227 1.30225 0.83263 0.75349 0.73786 0.76181 1.21099 1.20666 1.21366 1.18683 0.82172 0.82179 0.84079 1.90954 1.49923 1.42407 1.58224 1.87182 1.65634 1.40985 1.32560 0.91685 0.91587 0.90776 0.91002 0.90964 0.91534 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.08 9.46 37.16 0.35 -1.73 14 2 C 0.06 1.11 4.50 -26.16 -0.12 0.99 14 3 H 0.10 1.44 8.14 -51.93 -0.42 1.01 14 4 C 0.06 1.17 7.25 -3.15 -0.02 1.15 14 5 N -0.47 -12.53 2.83 -119.62 -0.34 -12.87 14 6 C -0.42 -12.14 9.86 -14.91 -0.15 -12.29 14 7 H 0.08 2.25 7.95 -52.49 -0.42 1.83 14 8 C 0.02 0.70 4.59 -17.47 -0.08 0.62 14 9 N -0.83 -26.55 12.19 55.49 0.68 -25.88 14 10 Si 1.09 25.73 29.99 -169.99 -5.10 20.63 14 11 H -0.29 -6.23 7.11 56.52 0.40 -5.83 14 12 H -0.28 -6.76 7.11 56.52 0.40 -6.36 14 13 H -0.29 -6.45 7.11 56.52 0.40 -6.05 14 14 C 0.57 16.46 7.60 53.71 0.41 16.87 14 15 O -0.53 -17.47 15.25 -19.11 -0.29 -17.76 14 16 O -0.35 -8.44 10.80 -37.90 -0.41 -8.85 14 17 H 0.06 0.96 8.14 -51.93 -0.42 0.54 14 18 H 0.07 0.81 8.14 -51.93 -0.42 0.39 14 19 H 0.07 0.77 8.14 -51.93 -0.42 0.35 14 20 H 0.07 1.31 8.14 -51.93 -0.42 0.89 14 21 H 0.07 1.26 7.73 -51.93 -0.40 0.86 14 22 H 0.27 8.95 7.08 -40.82 -0.29 8.66 14 LS Contribution 199.10 15.07 3.00 3.00 Total: -1.00 -35.74 199.10 -4.08 -39.82 By element: Atomic # 1 Polarization: -1.69 SS G_CDS: -2.02 Total: -3.71 kcal Atomic # 6 Polarization: 5.22 SS G_CDS: 0.39 Total: 5.61 kcal Atomic # 7 Polarization: -39.08 SS G_CDS: 0.34 Total: -38.74 kcal Atomic # 8 Polarization: -25.92 SS G_CDS: -0.70 Total: -26.62 kcal Atomic # 14 Polarization: 25.73 SS G_CDS: -5.10 Total: 20.63 kcal Total LS contribution 3.00 Total: 3.00 kcal Total: -35.74 -4.08 -39.82 kcal The number of atoms in the molecule is 22 The average number of expansion shells was 14.00 The maximum number of expansion shells was 14 The minimum number of expansion shells was 14 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000585892311.mol2 22 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -28.687 kcal (2) G-P(sol) polarization free energy of solvation -35.735 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -64.422 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.085 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.820 kcal (6) G-S(sol) free energy of system = (1) + (5) -68.507 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.10 seconds