Wall clock time and date at job start Mon Mar 30 2020 01:56:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.08998 * 110.57621 * 2 1 4 4 C 1.54093 * 110.51671 * 237.29851 * 2 1 3 5 5 N 1.47097 * 103.77975 * 241.36571 * 4 2 1 6 6 C 1.37198 * 125.55647 * 180.02562 * 5 4 2 7 7 H 1.07997 * 119.99734 * 326.62407 * 6 5 4 8 8 C 1.38881 * 120.00006 * 146.63063 * 6 5 4 9 9 N 1.31469 * 119.99876 * 334.80837 * 8 6 5 10 10 Si 1.86799 * 120.00246 * 154.80279 * 8 6 5 11 11 H 1.48512 * 109.46756 * 0.02562 * 10 8 6 12 12 H 1.48496 * 109.47524 * 240.00305 * 10 8 6 13 13 H 1.48502 * 109.47235 * 119.99769 * 10 8 6 14 14 C 1.34005 * 108.88273 * 0.27036 * 5 4 2 15 15 O 1.21507 * 123.07336 * 179.73499 * 14 5 4 16 16 O 1.33797 * 113.84915 * 359.52630 * 14 5 4 17 17 H 1.09002 * 109.47165 * 182.69778 * 1 2 3 18 18 H 1.09000 * 109.47514 * 302.69865 * 1 2 3 19 19 H 1.09003 * 109.47419 * 62.70247 * 1 2 3 20 20 H 1.09003 * 110.56253 * 122.79553 * 4 2 1 21 21 H 1.08998 * 110.56719 * 359.94231 * 4 2 1 22 22 H 0.96992 * 120.00181 * 354.83603 * 9 8 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9131 1.0204 0.0000 4 6 2.0701 -0.7797 -1.2144 5 7 2.8341 -1.8825 -0.6112 6 6 3.5095 -2.8566 -1.3020 7 1 3.1285 -3.2097 -2.2489 8 6 4.6829 -3.3887 -0.7836 9 7 5.4115 -2.6829 0.0527 10 14 5.2259 -5.1074 -1.2744 11 1 4.2390 -5.6869 -2.2209 12 1 5.3135 -5.9634 -0.0642 13 1 6.5571 -5.0379 -1.9290 14 6 2.7584 -1.7836 0.7230 15 8 3.2956 -2.5698 1.4778 16 8 2.0407 -0.7374 1.1481 17 1 -0.3633 -1.0265 0.0484 18 1 -0.3634 0.5551 0.8648 19 1 -0.3634 0.4713 -0.9132 20 1 2.7220 -0.1468 -1.8166 21 1 1.2485 -1.1675 -1.8166 22 1 5.1705 -1.7643 0.2497 RHF calculation, no. of doubly occupied orbitals= 31 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000585892311.mol2 22 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:56:44 Heat of formation + Delta-G solvation = -94.867621 kcal Electronic energy + Delta-G solvation = -10265.400567 eV Core-core repulsion = 8206.034973 eV Total energy + Delta-G solvation = -2059.365594 eV No. of doubly occupied orbitals = 31 Molecular weight (most abundant/longest-lived isotopes) = 171.068 amu Computer time = 0.10 seconds Orbital eigenvalues (eV) -42.29176 -38.08309 -36.58629 -33.82882 -32.62844 -27.79941 -26.31437 -23.34745 -22.70470 -19.85038 -17.87044 -17.69545 -17.24149 -15.92691 -15.50885 -15.13060 -14.69888 -14.62981 -13.81154 -13.38175 -12.99751 -12.68930 -12.35098 -12.01878 -11.86989 -11.48822 -11.27276 -10.82485 -9.82935 -8.79540 -6.19156 1.51016 1.63262 1.79311 2.02497 2.10928 2.56234 3.04868 3.15673 3.45529 3.86914 3.98733 4.36087 4.60325 4.63849 4.89978 4.96703 5.20296 5.70913 5.98955 6.70367 6.81146 7.28717 7.84118 8.52831 Molecular weight = 171.07amu Principal moments of inertia in cm(-1) A = 0.086611 B = 0.016690 C = 0.015317 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 323.207210 B = 1677.285554 C = 1827.579889 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C 0.057 3.943 3 H 0.131 0.869 4 C 0.055 3.945 5 N -0.481 5.481 6 C -0.435 4.435 7 H 0.100 0.900 8 C -0.030 4.030 9 N -0.868 5.868 10 Si 1.134 2.866 11 H -0.252 1.252 12 H -0.294 1.294 13 H -0.269 1.269 14 C 0.564 3.436 15 O -0.591 6.591 16 O -0.363 6.363 17 H 0.048 0.952 18 H 0.080 0.920 19 H 0.116 0.884 20 H 0.089 0.911 21 H 0.101 0.899 22 H 0.253 0.747 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.398 5.196 -5.986 11.548 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C 0.002 3.998 3 H 0.149 0.851 4 C -0.067 4.067 5 N -0.216 5.216 6 C -0.560 4.560 7 H 0.117 0.883 8 C -0.235 4.235 9 N -0.500 5.500 10 Si 0.953 3.047 11 H -0.176 1.176 12 H -0.221 1.221 13 H -0.194 1.194 14 C 0.319 3.681 15 O -0.482 6.482 16 O -0.275 6.275 17 H 0.067 0.933 18 H 0.099 0.901 19 H 0.134 0.866 20 H 0.107 0.893 21 H 0.119 0.881 22 H 0.063 0.937 Dipole moment (debyes) X Y Z Total from point charges -7.069 3.788 -5.148 9.530 hybrid contribution -0.954 1.409 0.016 1.702 sum -8.023 5.197 -5.132 10.849 Atomic orbital electron populations 1.22081 0.89816 1.03052 1.05372 1.24235 0.98031 0.96470 0.81086 0.85139 1.23150 0.97472 0.89380 0.96699 1.43769 1.48455 1.26216 1.03188 1.20197 1.08322 1.18654 1.08833 0.88282 1.28049 0.92169 1.08458 0.94851 1.70628 1.36914 1.09566 1.32858 0.82749 0.76760 0.69014 0.76157 1.17605 1.22056 1.19396 1.18931 0.82107 0.82648 0.84390 1.90872 1.52505 1.45034 1.59810 1.87125 1.65060 1.40018 1.35292 0.93263 0.90108 0.86579 0.89305 0.88085 0.93739 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.35 9.46 71.98 0.68 -2.67 14 2 C 0.06 1.83 4.50 30.96 0.14 1.97 14 3 H 0.13 3.34 8.14 -2.39 -0.02 3.32 14 4 C 0.06 2.03 7.25 86.64 0.63 2.66 14 5 N -0.48 -25.52 2.83 -764.07 -2.16 -27.69 14 6 C -0.44 -24.69 9.86 84.01 0.83 -23.86 14 7 H 0.10 5.18 7.95 -2.91 -0.02 5.15 14 8 C -0.03 -1.75 4.59 84.90 0.39 -1.36 14 9 N -0.87 -56.74 12.19 21.65 0.26 -56.47 14 10 Si 1.13 51.34 29.99 68.60 2.06 53.40 14 11 H -0.25 -9.96 7.11 99.48 0.71 -9.26 14 12 H -0.29 -13.85 7.11 99.48 0.71 -13.14 14 13 H -0.27 -11.26 7.11 99.48 0.71 -10.55 14 14 C 0.56 32.80 7.60 129.91 0.99 33.79 14 15 O -0.59 -40.53 15.25 19.66 0.30 -40.23 14 16 O -0.36 -17.28 10.80 -47.55 -0.51 -17.79 14 17 H 0.05 1.30 8.14 -2.39 -0.02 1.28 14 18 H 0.08 1.65 8.14 -2.39 -0.02 1.63 14 19 H 0.12 1.74 8.14 -2.39 -0.02 1.72 14 20 H 0.09 2.97 8.14 -2.39 -0.02 2.95 14 21 H 0.10 3.13 7.73 -2.39 -0.02 3.11 14 22 H 0.25 17.17 7.08 -92.71 -0.66 16.51 14 Total: -1.00 -80.46 199.10 4.92 -75.54 By element: Atomic # 1 Polarization: 1.39 SS G_CDS: 1.33 Total: 2.72 kcal Atomic # 6 Polarization: 6.87 SS G_CDS: 3.65 Total: 10.52 kcal Atomic # 7 Polarization: -82.26 SS G_CDS: -1.90 Total: -84.16 kcal Atomic # 8 Polarization: -57.81 SS G_CDS: -0.21 Total: -58.02 kcal Atomic # 14 Polarization: 51.34 SS G_CDS: 2.06 Total: 53.40 kcal Total: -80.46 4.92 -75.54 kcal The number of atoms in the molecule is 22 The average number of expansion shells was 14.00 The maximum number of expansion shells was 14 The minimum number of expansion shells was 14 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000585892311.mol2 22 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -19.330 kcal (2) G-P(sol) polarization free energy of solvation -80.461 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -99.792 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.924 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.537 kcal (6) G-S(sol) free energy of system = (1) + (5) -94.868 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.10 seconds