Wall clock time and date at job start Mon Mar 30 2020 01:56:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.08999 * 110.46295 * 2 1 4 4 C 1.54087 * 110.52328 * 122.63446 * 2 1 3 5 5 N 1.47093 * 103.77939 * 118.77136 * 4 2 1 6 6 C 1.37201 * 125.55352 * 179.97438 * 5 4 2 7 7 H 1.08001 * 119.99472 * 185.78961 * 6 5 4 8 8 C 1.38878 * 120.00149 * 5.79920 * 6 5 4 9 9 N 1.31473 * 119.99947 * 353.07644 * 8 6 5 10 10 Si 1.86799 * 120.00110 * 173.35987 * 8 6 5 11 11 H 1.48504 * 109.47108 * 179.72310 * 10 8 6 12 12 H 1.48504 * 109.46573 * 299.71911 * 10 8 6 13 13 H 1.48502 * 109.47263 * 59.71867 * 10 8 6 14 14 C 1.34002 * 108.88624 * 0.26277 * 5 4 2 15 15 O 1.21500 * 123.07265 * 179.70281 * 14 5 4 16 16 O 1.33802 * 113.84780 * 359.53256 * 14 5 4 17 17 H 1.09003 * 109.46894 * 297.36404 * 1 2 3 18 18 H 1.08998 * 109.47829 * 57.36633 * 1 2 3 19 19 H 1.09004 * 109.47194 * 177.36840 * 1 2 3 20 20 H 1.08997 * 110.56468 * 0.19391 * 4 2 1 21 21 H 1.09005 * 110.68244 * 237.40353 * 4 2 1 22 22 H 0.97003 * 120.00056 * 179.97438 * 9 8 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9111 1.0212 0.0000 4 6 2.0702 -0.7782 1.2153 5 7 2.8370 -1.8797 0.6133 6 6 3.5135 -2.8523 1.3052 7 1 4.1255 -3.5662 0.7740 8 6 3.4112 -2.9188 2.6886 9 7 2.7791 -1.9727 3.3473 10 14 4.1783 -4.3485 3.6143 11 1 3.9362 -4.1827 5.0700 12 1 3.5680 -5.6213 3.1528 13 1 5.6403 -4.3782 3.3557 14 6 2.7723 -1.7747 -0.7211 15 8 3.3224 -2.5528 -1.4748 16 8 2.0435 -0.7367 -1.1474 17 1 -0.3633 0.4724 0.9127 18 1 -0.3635 0.5541 -0.8654 19 1 -0.3634 -1.0266 -0.0472 20 1 1.2487 -1.1674 1.8166 21 1 2.7197 -0.1453 1.8200 22 1 2.7073 -2.0193 4.3135 RHF calculation, no. of doubly occupied orbitals= 31 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000585892339.mol2 22 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:56:45 Heat of formation + Delta-G solvation = -92.736609 kcal Electronic energy + Delta-G solvation = -10162.844197 eV Core-core repulsion = 8103.571011 eV Total energy + Delta-G solvation = -2059.273186 eV No. of doubly occupied orbitals = 31 Molecular weight (most abundant/longest-lived isotopes) = 171.068 amu Computer time = 0.10 seconds Orbital eigenvalues (eV) -42.21879 -37.93393 -36.79576 -33.69598 -32.71952 -28.24459 -26.36442 -23.33977 -22.29708 -19.71896 -17.95091 -17.33295 -17.29027 -16.24432 -15.51879 -15.11520 -14.61986 -14.20706 -13.82864 -13.36155 -12.92845 -12.80277 -12.65876 -12.13494 -12.05804 -11.53091 -11.26440 -11.11427 -10.05825 -8.46173 -6.04968 1.40544 1.42471 1.53271 1.96499 2.05129 2.40962 3.04319 3.17585 3.60428 4.00309 4.08069 4.50186 4.80324 4.86661 5.03126 5.25642 5.26421 5.34328 6.08186 6.41620 6.91915 7.22846 7.78482 8.62363 Molecular weight = 171.07amu Principal moments of inertia in cm(-1) A = 0.064277 B = 0.017630 C = 0.014425 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 435.513056 B = 1587.856128 C = 1940.642622 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C 0.048 3.952 3 H 0.133 0.867 4 C 0.110 3.890 5 N -0.469 5.469 6 C -0.338 4.338 7 H 0.085 0.915 8 C 0.001 3.999 9 N -0.899 5.899 10 Si 1.005 2.995 11 H -0.265 1.265 12 H -0.272 1.272 13 H -0.270 1.270 14 C 0.566 3.434 15 O -0.623 6.623 16 O -0.352 6.352 17 H 0.106 0.894 18 H 0.086 0.914 19 H 0.045 0.955 20 H 0.087 0.913 21 H 0.080 0.920 22 H 0.280 0.720 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.501 4.754 2.604 7.045 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C -0.007 4.007 3 H 0.151 0.849 4 C -0.013 4.013 5 N -0.201 5.201 6 C -0.463 4.463 7 H 0.103 0.897 8 C -0.201 4.201 9 N -0.538 5.538 10 Si 0.827 3.173 11 H -0.189 1.189 12 H -0.197 1.197 13 H -0.195 1.195 14 C 0.320 3.680 15 O -0.518 6.518 16 O -0.264 6.264 17 H 0.125 0.875 18 H 0.105 0.895 19 H 0.064 0.936 20 H 0.105 0.895 21 H 0.098 0.902 22 H 0.090 0.910 Dipole moment (debyes) X Y Z Total from point charges -4.348 4.523 2.263 6.669 hybrid contribution 0.454 -0.627 0.445 0.893 sum -3.894 3.895 2.708 6.137 Atomic orbital electron populations 1.22048 0.90324 1.02835 1.05035 1.24475 0.97870 0.96813 0.81534 0.84898 1.22722 0.96673 0.87905 0.94008 1.43862 1.46523 1.26429 1.03293 1.19521 1.27811 1.08677 0.90311 0.89709 1.26102 0.97089 1.00706 0.96156 1.69932 1.41867 1.32492 1.09474 0.84825 0.78444 0.77048 0.76980 1.18916 1.19695 1.19463 1.18517 0.83022 0.82933 0.83518 1.90753 1.54737 1.46410 1.59920 1.87090 1.64387 1.39946 1.34961 0.87545 0.89547 0.93557 0.89494 0.90192 0.91004 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.92 9.46 71.98 0.68 -3.24 14 2 C 0.05 1.71 4.50 30.96 0.14 1.85 14 3 H 0.13 3.74 8.14 -2.39 -0.02 3.72 14 4 C 0.11 4.84 5.31 86.63 0.46 5.30 14 5 N -0.47 -25.66 3.08 -764.09 -2.35 -28.01 14 6 C -0.34 -19.36 9.93 84.01 0.83 -18.53 14 7 H 0.09 5.09 7.69 -2.91 -0.02 5.07 14 8 C 0.00 0.05 5.48 84.90 0.47 0.52 14 9 N -0.90 -45.27 10.42 21.65 0.23 -45.05 14 10 Si 1.00 41.04 29.56 68.60 2.03 43.07 14 11 H -0.27 -10.02 7.11 99.48 0.71 -9.31 14 12 H -0.27 -11.08 7.11 99.48 0.71 -10.37 14 13 H -0.27 -10.89 7.11 99.48 0.71 -10.18 14 14 C 0.57 31.79 8.80 129.91 1.14 32.94 14 15 O -0.62 -39.55 17.54 19.68 0.35 -39.21 14 16 O -0.35 -16.47 10.80 -47.60 -0.51 -16.99 14 17 H 0.11 2.24 8.14 -2.39 -0.02 2.22 14 18 H 0.09 1.94 8.14 -2.39 -0.02 1.92 14 19 H 0.05 1.41 8.14 -2.38 -0.02 1.39 14 20 H 0.09 3.88 6.98 -2.39 -0.02 3.86 14 21 H 0.08 3.57 7.64 -2.38 -0.02 3.55 14 22 H 0.28 13.07 8.31 -92.71 -0.77 12.30 14 Total: -1.00 -67.85 199.37 4.67 -63.18 By element: Atomic # 1 Polarization: 2.95 SS G_CDS: 1.22 Total: 4.17 kcal Atomic # 6 Polarization: 15.12 SS G_CDS: 3.72 Total: 18.84 kcal Atomic # 7 Polarization: -70.94 SS G_CDS: -2.13 Total: -73.06 kcal Atomic # 8 Polarization: -56.03 SS G_CDS: -0.17 Total: -56.20 kcal Atomic # 14 Polarization: 41.04 SS G_CDS: 2.03 Total: 43.07 kcal Total: -67.85 4.67 -63.18 kcal The number of atoms in the molecule is 22 The average number of expansion shells was 14.00 The maximum number of expansion shells was 14 The minimum number of expansion shells was 14 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000585892339.mol2 22 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -29.552 kcal (2) G-P(sol) polarization free energy of solvation -67.854 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -97.406 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.669 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.185 kcal (6) G-S(sol) free energy of system = (1) + (5) -92.737 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.10 seconds