Wall clock time and date at job start Mon Mar 30 2020 01:53:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30679 * 1 3 3 Si 1.86797 * 119.99940 * 2 1 4 4 H 1.48506 * 109.47213 * 274.98258 * 3 2 1 5 5 H 1.48502 * 109.47348 * 34.98189 * 3 2 1 6 6 H 1.48500 * 109.46950 * 154.98624 * 3 2 1 7 7 C 1.40045 * 119.99853 * 180.02562 * 2 1 3 8 8 H 1.07995 * 120.00153 * 186.15370 * 7 2 1 9 9 C 1.46379 * 119.99954 * 6.14813 * 7 2 1 10 10 O 1.21688 * 119.99896 * 353.94011 * 9 7 2 11 11 N 1.34777 * 119.99706 * 173.94426 * 9 7 2 12 12 C 1.46498 * 119.99538 * 179.97438 * 11 9 7 13 13 C 1.54035 * 113.81449 * 154.99856 * 12 11 9 14 14 O 1.44173 * 85.66488 * 136.74003 * 13 12 11 15 15 C 1.44443 * 93.22902 * 335.92639 * 14 13 12 16 16 H 0.96999 * 119.99853 * 0.02562 * 1 2 3 17 17 H 0.96999 * 120.00421 * 359.97438 * 11 9 7 18 18 H 1.09004 * 113.00648 * 23.17678 * 12 11 9 19 19 H 1.09005 * 113.86871 * 250.94937 * 13 12 11 20 20 H 1.09001 * 113.86779 * 22.52767 * 13 12 11 21 21 H 1.08990 * 113.75101 * 269.91938 * 15 14 13 22 22 H 1.08999 * 114.05585 * 138.26555 * 15 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3068 0.0000 0.0000 3 14 2.2408 1.6177 0.0000 4 1 2.3830 2.1072 -1.3948 5 1 1.4948 2.6200 0.8027 6 1 3.5870 1.4120 0.5920 7 6 2.0070 -1.2128 -0.0005 8 1 3.0823 -1.2156 0.0997 9 6 1.2814 -2.4768 -0.1369 10 8 0.0645 -2.4826 -0.1388 11 7 1.9611 -3.6341 -0.2602 12 6 1.2348 -4.8991 -0.3960 13 6 2.0361 -6.0024 -1.1125 14 8 1.5327 -6.8818 -0.0869 15 6 1.3202 -5.8022 0.8489 16 1 -0.4850 0.8401 -0.0004 17 1 2.9310 -3.6294 -0.2589 18 1 0.2229 -4.7702 -0.7802 19 1 1.6693 -6.2355 -2.1121 20 1 3.1158 -5.8568 -1.0775 21 1 2.1812 -5.5965 1.4847 22 1 0.3861 -5.8745 1.4061 RHF calculation, no. of doubly occupied orbitals= 31 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000601843719.mol2 22 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:53:13 Heat of formation + Delta-G solvation = -55.689719 kcal Electronic energy + Delta-G solvation = -9740.522350 eV Core-core repulsion = 7682.855637 eV Total energy + Delta-G solvation = -2057.666713 eV No. of doubly occupied orbitals = 31 Molecular weight (most abundant/longest-lived isotopes) = 171.068 amu Computer time = 0.09 seconds Orbital eigenvalues (eV) -39.89217 -36.88523 -32.91818 -32.14332 -28.06793 -26.14676 -25.81361 -20.68848 -19.64148 -17.28353 -15.98210 -15.78594 -15.40370 -15.13318 -13.97167 -12.97897 -12.70759 -12.27251 -12.01956 -11.36768 -11.15924 -10.79918 -10.77440 -10.46482 -10.22994 -9.34334 -8.90436 -7.70014 -7.66269 -6.25322 -4.70550 3.10904 3.18332 3.21827 4.03968 4.07622 4.45608 4.78575 4.96585 5.45778 5.58214 5.64402 5.77187 5.98025 6.30662 6.41609 6.53446 7.38410 7.81514 7.97701 8.25808 8.96656 9.42478 10.52317 10.70149 Molecular weight = 171.07amu Principal moments of inertia in cm(-1) A = 0.113922 B = 0.011269 C = 0.010728 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 245.723896 B = 2484.200179 C = 2609.273182 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.766 5.766 2 C 0.087 3.913 3 Si 0.909 3.091 4 H -0.272 1.272 5 H -0.279 1.279 6 H -0.265 1.265 7 C -0.546 4.546 8 H 0.069 0.931 9 C 0.552 3.448 10 O -0.580 6.580 11 N -0.757 5.757 12 C 0.100 3.900 13 C 0.022 3.978 14 O -0.388 6.388 15 C 0.015 3.985 16 H 0.269 0.731 17 H 0.383 0.617 18 H 0.114 0.886 19 H 0.089 0.911 20 H 0.077 0.923 21 H 0.078 0.922 22 H 0.088 0.912 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.212 -4.825 -0.642 7.131 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.395 5.395 2 C -0.133 4.133 3 Si 0.734 3.266 4 H -0.198 1.198 5 H -0.204 1.204 6 H -0.189 1.189 7 C -0.583 4.583 8 H 0.087 0.913 9 C 0.356 3.644 10 O -0.462 6.462 11 N -0.412 5.412 12 C -0.008 4.008 13 C -0.056 4.056 14 O -0.306 6.306 15 C -0.064 4.064 16 H 0.080 0.920 17 H 0.215 0.785 18 H 0.132 0.868 19 H 0.107 0.893 20 H 0.095 0.905 21 H 0.096 0.904 22 H 0.107 0.893 Dipole moment (debyes) X Y Z Total from point charges 4.075 -4.992 -0.626 6.474 hybrid contribution 0.976 0.934 0.009 1.351 sum 5.051 -4.057 -0.618 6.508 Atomic orbital electron populations 1.70026 1.07125 1.27411 1.34921 1.25721 0.94617 1.00388 0.92546 0.86335 0.80213 0.81358 0.78711 1.19769 1.20409 1.18862 1.20899 0.94165 0.89543 1.53684 0.91270 1.18322 0.87234 0.82501 0.76312 1.90600 1.14075 1.86333 1.55236 1.46244 1.08561 1.05627 1.80765 1.23840 0.98888 0.84668 0.93443 1.24432 0.98836 0.88546 0.93796 1.89638 1.84377 1.29324 1.27281 1.24701 1.01568 0.85247 0.94861 0.92012 0.78465 0.86789 0.89317 0.90454 0.90386 0.89348 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.77 -22.78 11.85 55.55 0.66 -22.12 14 2 C 0.09 2.41 5.49 -17.36 -0.10 2.32 14 3 Si 0.91 19.86 29.56 -169.99 -5.03 14.83 14 4 H -0.27 -5.83 7.11 56.52 0.40 -5.43 14 5 H -0.28 -5.97 7.11 56.52 0.40 -5.57 14 6 H -0.26 -5.57 7.11 56.52 0.40 -5.17 14 7 C -0.55 -15.21 9.53 -35.63 -0.34 -15.55 14 8 H 0.07 1.76 7.85 -52.49 -0.41 1.34 14 9 C 0.55 15.48 7.74 -12.98 -0.10 15.38 14 10 O -0.58 -18.58 14.64 5.20 0.08 -18.50 14 11 N -0.76 -16.55 5.37 -61.17 -0.33 -16.88 14 12 C 0.10 1.93 4.50 -66.85 -0.30 1.62 14 13 C 0.02 0.34 8.96 37.61 0.34 0.68 14 14 O -0.39 -6.74 12.47 -35.23 -0.44 -7.18 14 15 C 0.01 0.26 9.02 37.61 0.34 0.60 14 16 H 0.27 7.24 8.29 -40.82 -0.34 6.90 14 17 H 0.38 7.25 8.71 -40.82 -0.36 6.89 14 18 H 0.11 2.46 7.46 -51.93 -0.39 2.08 14 19 H 0.09 1.23 8.14 -51.93 -0.42 0.80 14 20 H 0.08 1.05 8.12 -51.93 -0.42 0.63 14 21 H 0.08 1.25 8.14 -51.93 -0.42 0.83 14 22 H 0.09 1.48 8.14 -51.93 -0.42 1.06 14 LS Contribution 205.33 15.07 3.09 3.09 Total: -1.00 -33.23 205.33 -4.10 -37.33 By element: Atomic # 1 Polarization: 6.35 SS G_CDS: -1.98 Total: 4.37 kcal Atomic # 6 Polarization: 5.21 SS G_CDS: -0.16 Total: 5.05 kcal Atomic # 7 Polarization: -39.33 SS G_CDS: 0.33 Total: -39.00 kcal Atomic # 8 Polarization: -25.32 SS G_CDS: -0.36 Total: -25.68 kcal Atomic # 14 Polarization: 19.86 SS G_CDS: -5.03 Total: 14.83 kcal Total LS contribution 3.09 Total: 3.09 kcal Total: -33.23 -4.10 -37.33 kcal The number of atoms in the molecule is 22 The average number of expansion shells was 14.00 The maximum number of expansion shells was 14 The minimum number of expansion shells was 14 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000601843719.mol2 22 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -18.355 kcal (2) G-P(sol) polarization free energy of solvation -33.232 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -51.587 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.103 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.335 kcal (6) G-S(sol) free energy of system = (1) + (5) -55.690 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.09 seconds