Wall clock time and date at job start Mon Mar 30 2020 01:53:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30679 * 1 3 3 Si 1.86797 * 119.99940 * 2 1 4 4 H 1.48506 * 109.47213 * 274.98258 * 3 2 1 5 5 H 1.48502 * 109.47348 * 34.98189 * 3 2 1 6 6 H 1.48500 * 109.46950 * 154.98624 * 3 2 1 7 7 C 1.40045 * 119.99853 * 180.02562 * 2 1 3 8 8 H 1.07995 * 120.00153 * 186.15370 * 7 2 1 9 9 C 1.46379 * 119.99954 * 6.14813 * 7 2 1 10 10 O 1.21688 * 119.99896 * 353.94011 * 9 7 2 11 11 N 1.34777 * 119.99706 * 173.94426 * 9 7 2 12 12 C 1.46498 * 119.99538 * 179.97438 * 11 9 7 13 13 C 1.54035 * 113.81449 * 154.99856 * 12 11 9 14 14 O 1.44173 * 85.66488 * 136.74003 * 13 12 11 15 15 C 1.44443 * 93.22902 * 335.92639 * 14 13 12 16 16 H 0.96999 * 119.99853 * 0.02562 * 1 2 3 17 17 H 0.96999 * 120.00421 * 359.97438 * 11 9 7 18 18 H 1.09004 * 113.00648 * 23.17678 * 12 11 9 19 19 H 1.09005 * 113.86871 * 250.94937 * 13 12 11 20 20 H 1.09001 * 113.86779 * 22.52767 * 13 12 11 21 21 H 1.08990 * 113.75101 * 269.91938 * 15 14 13 22 22 H 1.08999 * 114.05585 * 138.26555 * 15 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3068 0.0000 0.0000 3 14 2.2408 1.6177 0.0000 4 1 2.3830 2.1072 -1.3948 5 1 1.4948 2.6200 0.8027 6 1 3.5870 1.4120 0.5920 7 6 2.0070 -1.2128 -0.0005 8 1 3.0823 -1.2156 0.0997 9 6 1.2814 -2.4768 -0.1369 10 8 0.0645 -2.4826 -0.1388 11 7 1.9611 -3.6341 -0.2602 12 6 1.2348 -4.8991 -0.3960 13 6 2.0361 -6.0024 -1.1125 14 8 1.5327 -6.8818 -0.0869 15 6 1.3202 -5.8022 0.8489 16 1 -0.4850 0.8401 -0.0004 17 1 2.9310 -3.6294 -0.2589 18 1 0.2229 -4.7702 -0.7802 19 1 1.6693 -6.2355 -2.1121 20 1 3.1158 -5.8568 -1.0775 21 1 2.1812 -5.5965 1.4847 22 1 0.3861 -5.8745 1.4061 RHF calculation, no. of doubly occupied orbitals= 31 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000601843719.mol2 22 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:53:13 Heat of formation + Delta-G solvation = -82.924541 kcal Electronic energy + Delta-G solvation = -9741.703340 eV Core-core repulsion = 7682.855637 eV Total energy + Delta-G solvation = -2058.847703 eV No. of doubly occupied orbitals = 31 Molecular weight (most abundant/longest-lived isotopes) = 171.068 amu Computer time = 0.10 seconds Orbital eigenvalues (eV) -41.34281 -38.93336 -34.88746 -34.18262 -29.80885 -27.76085 -27.46960 -22.49905 -21.37314 -19.20822 -17.68169 -17.42189 -17.06841 -16.64279 -15.80789 -14.83042 -14.64757 -13.80393 -13.62876 -13.20422 -12.85953 -12.65238 -12.41983 -12.20570 -11.96123 -10.94444 -10.70788 -9.89246 -9.54999 -8.31493 -6.87373 1.41646 1.42071 1.58618 2.24528 2.42889 2.67019 3.07944 3.37498 3.79103 4.07466 4.25371 4.35372 4.62415 4.91165 5.03785 5.09183 5.31928 5.85863 6.15277 6.24310 6.85645 7.50341 8.45656 8.64814 Molecular weight = 171.07amu Principal moments of inertia in cm(-1) A = 0.113922 B = 0.011269 C = 0.010728 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 245.723896 B = 2484.200179 C = 2609.273182 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.822 5.822 2 C 0.028 3.972 3 Si 0.999 3.001 4 H -0.264 1.264 5 H -0.274 1.274 6 H -0.247 1.247 7 C -0.573 4.573 8 H 0.091 0.909 9 C 0.535 3.465 10 O -0.632 6.632 11 N -0.742 5.742 12 C 0.078 3.922 13 C 0.041 3.959 14 O -0.396 6.396 15 C 0.024 3.976 16 H 0.275 0.725 17 H 0.400 0.600 18 H 0.081 0.919 19 H 0.107 0.893 20 H 0.107 0.893 21 H 0.096 0.904 22 H 0.087 0.913 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.353 -4.628 -0.732 8.719 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.451 5.451 2 C -0.187 4.187 3 Si 0.819 3.181 4 H -0.188 1.188 5 H -0.199 1.199 6 H -0.170 1.170 7 C -0.610 4.610 8 H 0.109 0.891 9 C 0.340 3.660 10 O -0.520 6.520 11 N -0.397 5.397 12 C -0.029 4.029 13 C -0.036 4.036 14 O -0.314 6.314 15 C -0.054 4.054 16 H 0.085 0.915 17 H 0.235 0.765 18 H 0.099 0.901 19 H 0.125 0.875 20 H 0.124 0.876 21 H 0.114 0.886 22 H 0.105 0.895 Dipole moment (debyes) X Y Z Total from point charges 6.268 -4.856 -0.720 7.962 hybrid contribution 0.303 0.781 0.026 0.838 sum 6.571 -4.075 -0.694 7.763 Atomic orbital electron populations 1.70192 1.09626 1.29051 1.36252 1.26998 0.95486 1.05065 0.91142 0.84980 0.78944 0.75059 0.79139 1.18839 1.19894 1.17000 1.21464 0.95381 0.90172 1.53936 0.89090 1.18702 0.86844 0.84420 0.76007 1.90557 1.16307 1.87505 1.57611 1.45838 1.09285 1.05107 1.79494 1.24090 0.98087 0.84521 0.96235 1.24529 0.99871 0.85221 0.94006 1.89639 1.84732 1.29377 1.27698 1.24660 1.02389 0.84121 0.94265 0.91511 0.76501 0.90083 0.87451 0.87557 0.88605 0.89465 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.82 -49.90 11.85 21.84 0.26 -49.65 14 2 C 0.03 1.56 5.49 85.30 0.47 2.02 14 3 Si 1.00 40.10 29.56 68.60 2.03 42.13 14 4 H -0.26 -10.14 7.11 99.48 0.71 -9.43 14 5 H -0.27 -10.67 7.11 99.48 0.71 -9.96 14 6 H -0.25 -9.11 7.11 99.48 0.71 -8.40 14 7 C -0.57 -31.76 9.53 24.83 0.24 -31.52 14 8 H 0.09 4.46 7.85 -2.91 -0.02 4.44 14 9 C 0.54 30.49 7.74 86.36 0.67 31.16 14 10 O -0.63 -42.05 14.64 -4.31 -0.06 -42.11 14 11 N -0.74 -31.99 5.37 -476.02 -2.55 -34.54 14 12 C 0.08 2.97 4.50 45.69 0.21 3.17 14 13 C 0.04 1.16 8.96 72.27 0.65 1.81 14 14 O -0.40 -12.87 12.47 -148.98 -1.86 -14.73 14 15 C 0.02 0.79 9.02 72.28 0.65 1.45 14 16 H 0.27 15.09 8.29 -92.71 -0.77 14.33 14 17 H 0.40 14.37 8.71 -92.71 -0.81 13.57 14 18 H 0.08 3.63 7.46 -2.39 -0.02 3.61 14 19 H 0.11 2.67 8.14 -2.38 -0.02 2.65 14 20 H 0.11 2.45 8.12 -2.39 -0.02 2.43 14 21 H 0.10 2.85 8.14 -2.39 -0.02 2.83 14 22 H 0.09 2.89 8.14 -2.39 -0.02 2.87 14 Total: -1.00 -72.99 205.33 1.12 -71.87 By element: Atomic # 1 Polarization: 18.51 SS G_CDS: 0.43 Total: 18.93 kcal Atomic # 6 Polarization: 5.21 SS G_CDS: 2.88 Total: 8.09 kcal Atomic # 7 Polarization: -81.89 SS G_CDS: -2.30 Total: -84.19 kcal Atomic # 8 Polarization: -54.91 SS G_CDS: -1.92 Total: -56.84 kcal Atomic # 14 Polarization: 40.10 SS G_CDS: 2.03 Total: 42.13 kcal Total: -72.99 1.12 -71.87 kcal The number of atoms in the molecule is 22 The average number of expansion shells was 14.00 The maximum number of expansion shells was 14 The minimum number of expansion shells was 14 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000601843719.mol2 22 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -11.054 kcal (2) G-P(sol) polarization free energy of solvation -72.987 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -84.041 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.117 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.870 kcal (6) G-S(sol) free energy of system = (1) + (5) -82.925 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.10 seconds