Wall clock time and date at job start Mon Mar 30 2020 02:11:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 O 1.42898 * 109.47324 * 2 1 4 4 C 1.50699 * 109.47255 * 239.99560 * 2 1 3 5 5 H 1.07993 * 120.00625 * 245.13549 * 4 2 1 6 6 C 1.37882 * 119.99829 * 65.13283 * 4 2 1 7 7 N 1.31510 * 120.00239 * 193.61398 * 6 4 2 8 8 Si 1.86805 * 119.99819 * 13.61652 * 6 4 2 9 9 H 1.48502 * 109.46810 * 94.19361 * 8 6 4 10 10 H 1.48495 * 109.47090 * 214.19080 * 8 6 4 11 11 H 1.48500 * 109.47318 * 334.19636 * 8 6 4 12 12 C 1.53002 * 109.46674 * 120.00093 * 2 1 3 13 13 C 1.53933 * 113.73378 * 281.60050 * 12 2 1 14 14 N 1.48185 * 86.10708 * 221.96045 * 13 12 2 15 15 C 1.47968 * 90.79550 * 24.60266 * 14 13 12 16 16 H 1.09003 * 109.47227 * 62.53871 * 1 2 3 17 17 H 1.08996 * 109.47536 * 182.53990 * 1 2 3 18 18 H 1.08998 * 109.46960 * 302.54195 * 1 2 3 19 19 H 0.96700 * 113.99566 * 179.97438 * 3 2 1 20 20 H 0.97001 * 120.00356 * 179.97438 * 7 6 4 21 21 H 1.09000 * 112.93960 * 53.17370 * 12 2 1 22 22 H 1.09003 * 113.75762 * 336.24669 * 13 12 2 23 23 H 1.09004 * 113.75608 * 107.60847 * 13 12 2 24 24 H 1.00902 * 110.90018 * 271.71603 * 14 13 12 25 25 H 1.09000 * 113.75770 * 221.08645 * 15 14 13 26 26 H 1.08997 * 113.86356 * 89.73243 * 15 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0064 1.3472 0.0000 4 6 2.0324 -0.7105 -1.2304 5 1 2.5831 -1.6344 -1.1335 6 6 1.7887 -0.1810 -2.4800 7 7 1.9822 -0.9146 -3.5541 8 14 1.1839 1.5785 -2.6471 9 1 2.3428 2.4820 -2.8610 10 1 0.2596 1.6763 -3.8051 11 1 0.4687 1.9759 -1.4078 12 6 2.0399 -0.7213 1.2493 13 6 1.9792 0.1348 2.5271 14 7 3.3154 -0.4226 2.8429 15 6 3.5705 -0.6785 1.4080 16 1 -0.3634 0.4739 -0.9119 17 1 -0.3634 -1.0266 0.0455 18 1 -0.3633 0.5528 0.8663 19 1 2.9703 1.4235 0.0004 20 1 1.8105 -0.5422 -4.4332 21 1 1.6142 -1.7177 1.3681 22 1 1.9848 1.2082 2.3373 23 1 1.1987 -0.1710 3.2239 24 1 3.2325 -1.2879 3.3553 25 1 4.0592 -1.6329 1.2122 26 1 4.0427 0.1553 0.8885 RHF calculation, no. of doubly occupied orbitals= 32 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000606243374.mol2 26 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:11:33 Heat of formation + Delta-G solvation = -37.641449 kcal Electronic energy + Delta-G solvation = -10579.361189 eV Core-core repulsion = 8658.310203 eV Total energy + Delta-G solvation = -1921.050986 eV No. of doubly occupied orbitals = 32 Molecular weight (most abundant/longest-lived isotopes) = 171.100 amu Computer time = 0.12 seconds Orbital eigenvalues (eV) -40.86562 -37.36355 -34.43829 -32.15432 -27.73684 -27.35620 -26.30561 -22.50055 -20.45035 -19.27129 -17.47675 -17.04178 -16.92395 -15.07642 -15.01484 -14.54172 -13.90776 -13.68081 -13.51110 -13.23051 -13.04523 -12.92979 -12.51294 -12.06736 -11.60595 -11.57040 -10.81556 -10.69801 -10.19658 -9.20637 -8.33021 -6.42359 1.44723 1.49148 1.75020 2.45248 3.00382 3.23365 3.68555 3.92739 4.02715 4.53999 4.61379 4.74977 4.82375 4.88946 4.90732 5.04096 5.13778 5.26270 5.40696 5.61009 5.72043 6.13518 6.50123 6.67486 7.14908 7.38322 8.80664 Molecular weight = 171.10amu Principal moments of inertia in cm(-1) A = 0.065618 B = 0.018822 C = 0.017363 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 426.608959 B = 1487.256619 C = 1612.267935 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.127 4.127 2 C 0.224 3.776 3 O -0.574 6.574 4 C -0.546 4.546 5 H 0.037 0.963 6 C 0.028 3.972 7 N -0.939 5.939 8 Si 0.962 3.038 9 H -0.290 1.290 10 H -0.326 1.326 11 H -0.220 1.220 12 C -0.163 4.163 13 C 0.030 3.970 14 N -0.662 5.662 15 C 0.031 3.969 16 H 0.037 0.963 17 H 0.059 0.941 18 H 0.058 0.942 19 H 0.367 0.633 20 H 0.263 0.737 21 H 0.082 0.918 22 H 0.097 0.903 23 H 0.082 0.918 24 H 0.340 0.660 25 H 0.064 0.936 26 H 0.088 0.912 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.972 2.605 10.159 10.533 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.184 4.184 2 C 0.184 3.816 3 O -0.383 6.383 4 C -0.583 4.583 5 H 0.055 0.945 6 C -0.172 4.172 7 N -0.578 5.578 8 Si 0.793 3.207 9 H -0.217 1.217 10 H -0.256 1.256 11 H -0.143 1.143 12 C -0.183 4.183 13 C -0.100 4.100 14 N -0.289 5.289 15 C -0.099 4.099 16 H 0.056 0.944 17 H 0.078 0.922 18 H 0.077 0.923 19 H 0.215 0.785 20 H 0.072 0.928 21 H 0.100 0.900 22 H 0.115 0.885 23 H 0.100 0.900 24 H 0.154 0.846 25 H 0.083 0.917 26 H 0.107 0.893 Dipole moment (debyes) X Y Z Total from point charges -1.096 3.353 10.273 10.862 hybrid contribution -0.091 -0.654 -1.228 1.395 sum -1.188 2.699 9.045 9.513 Atomic orbital electron populations 1.21902 0.95177 1.00878 1.00494 1.18984 0.91824 0.79420 0.91368 1.86418 1.26298 1.29732 1.95818 1.21656 1.36371 1.08982 0.91301 0.94454 1.25816 0.94125 1.01780 0.95450 1.70142 1.50516 1.38153 0.98967 0.85729 0.78150 0.80162 0.76703 1.21736 1.25645 1.14345 1.24580 0.97293 0.99798 0.96653 1.23687 0.91379 1.00578 0.94351 1.65166 1.23813 1.28763 1.11150 1.23445 0.95534 1.01195 0.89753 0.94417 0.92213 0.92350 0.78483 0.92791 0.90007 0.88494 0.89963 0.84578 0.91743 0.89328 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -5.19 8.18 71.98 0.59 -4.60 15 2 C 0.22 9.60 0.53 -11.54 -0.01 9.59 15 3 O -0.57 -23.76 7.81 -148.98 -1.16 -24.92 15 4 C -0.55 -29.30 8.40 25.60 0.21 -29.08 15 5 H 0.04 2.22 7.99 -2.91 -0.02 2.20 15 6 C 0.03 1.58 5.37 84.66 0.45 2.04 15 7 N -0.94 -57.94 13.96 21.45 0.30 -57.64 15 8 Si 0.96 46.85 24.56 68.60 1.68 48.54 15 9 H -0.29 -14.02 7.11 99.48 0.71 -13.31 15 10 H -0.33 -16.29 7.11 99.48 0.71 -15.58 15 11 H -0.22 -10.05 4.79 99.48 0.48 -9.57 15 12 C -0.16 -5.80 3.13 -10.15 -0.03 -5.83 15 13 C 0.03 0.88 8.28 86.37 0.72 1.59 15 14 N -0.66 -19.22 8.56 -523.45 -4.48 -23.71 15 15 C 0.03 1.02 7.95 86.41 0.69 1.71 15 16 H 0.04 1.64 4.82 -2.39 -0.01 1.63 15 17 H 0.06 2.34 8.14 -2.39 -0.02 2.32 15 18 H 0.06 2.05 8.14 -2.39 -0.02 2.03 15 19 H 0.37 13.87 7.25 -74.06 -0.54 13.33 15 20 H 0.26 15.43 8.31 -92.71 -0.77 14.66 15 21 H 0.08 2.91 8.14 -2.39 -0.02 2.89 15 22 H 0.10 3.04 7.12 -2.39 -0.02 3.03 15 23 H 0.08 2.07 8.14 -2.39 -0.02 2.05 15 24 H 0.34 8.45 8.88 -89.69 -0.80 7.66 15 25 H 0.06 2.14 8.14 -2.39 -0.02 2.12 15 26 H 0.09 3.07 6.47 -2.39 -0.02 3.06 15 Total: -1.00 -62.40 207.30 -1.42 -63.82 By element: Atomic # 1 Polarization: 18.87 SS G_CDS: -0.38 Total: 18.50 kcal Atomic # 6 Polarization: -27.20 SS G_CDS: 2.62 Total: -24.58 kcal Atomic # 7 Polarization: -77.16 SS G_CDS: -4.18 Total: -81.34 kcal Atomic # 8 Polarization: -23.76 SS G_CDS: -1.16 Total: -24.92 kcal Atomic # 14 Polarization: 46.85 SS G_CDS: 1.68 Total: 48.54 kcal Total: -62.40 -1.42 -63.82 kcal The number of atoms in the molecule is 26 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000606243374.mol2 26 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 26.179 kcal (2) G-P(sol) polarization free energy of solvation -62.401 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -36.223 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.419 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.820 kcal (6) G-S(sol) free energy of system = (1) + (5) -37.641 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.12 seconds