Wall clock time and date at job start Mon Mar 30 2020 02:16:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 H 1.09000 * 109.47176 * 2 1 4 4 O 1.42899 * 109.47424 * 120.00187 * 2 1 3 5 5 C 1.53004 * 109.46813 * 240.00107 * 2 1 3 6 6 C 1.53494 * 114.20233 * 180.02562 * 5 2 1 7 7 N 1.47067 * 87.98867 * 87.51802 * 6 5 2 8 8 C 1.36929 * 136.05969 * 207.08196 * 7 6 5 9 9 H 1.08002 * 120.00165 * 7.30172 * 8 7 6 10 10 C 1.38809 * 120.00098 * 187.29538 * 8 7 6 11 11 N 1.31620 * 120.00234 * 171.58054 * 10 8 7 12 12 Si 1.86806 * 119.99996 * 351.57783 * 10 8 7 13 13 H 1.48500 * 109.46899 * 178.01999 * 12 10 8 14 14 H 1.48491 * 109.46878 * 298.01952 * 12 10 8 15 15 H 1.48499 * 109.46678 * 58.02189 * 12 10 8 16 16 C 1.47071 * 87.88046 * 27.33925 * 7 6 5 17 17 H 1.08996 * 109.47413 * 180.02562 * 1 2 3 18 18 H 1.08998 * 109.47032 * 300.00497 * 1 2 3 19 19 H 1.09006 * 109.47184 * 59.99679 * 1 2 3 20 20 H 0.96701 * 114.00069 * 59.99336 * 4 2 1 21 21 H 1.08993 * 113.41700 * 46.80371 * 5 2 1 22 22 H 1.09000 * 113.47489 * 332.73647 * 6 5 2 23 23 H 1.09002 * 113.51957 * 202.30698 * 6 5 2 24 24 H 0.96996 * 119.99914 * 356.97156 * 11 10 8 25 25 H 1.09002 * 113.46549 * 87.44661 * 16 7 6 26 26 H 1.09001 * 113.46389 * 217.87710 * 16 7 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 8 2.0064 -0.6737 1.1667 5 6 2.0399 -0.7213 -1.2493 6 6 3.5696 -0.7851 -1.3587 7 7 3.5228 -2.0231 -0.5661 8 6 4.3698 -2.6817 0.2846 9 1 5.2966 -2.2188 0.5895 10 6 4.0371 -3.9445 0.7553 11 7 4.9182 -4.6464 1.4359 12 14 2.3387 -4.6477 0.4227 13 1 2.2521 -6.0194 0.9851 14 1 1.3122 -3.7853 1.0610 15 1 2.1019 -4.6976 -1.0425 16 6 2.1684 -2.2455 -1.0945 17 1 -0.3634 -1.0276 0.0005 18 1 -0.3633 0.5139 0.8899 19 1 -0.3634 0.5139 -0.8900 20 1 1.7210 -1.5952 1.2329 21 1 1.5388 -0.4081 -2.1652 22 1 4.0759 0.0361 -0.8515 23 1 3.9270 -0.9353 -2.3775 24 1 5.8141 -4.3002 1.5710 25 1 2.1554 -2.7809 -2.0439 26 1 1.4809 -2.6685 -0.3620 RHF calculation, no. of doubly occupied orbitals= 32 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000642824878.mol2 26 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:16:21 Heat of formation + Delta-G solvation = 11.192112 kcal Electronic energy + Delta-G solvation = -10565.364466 eV Core-core repulsion = 8646.431062 eV Total energy + Delta-G solvation = -1918.933404 eV No. of doubly occupied orbitals = 32 Molecular weight (most abundant/longest-lived isotopes) = 171.100 amu Computer time = 0.13 seconds Orbital eigenvalues (eV) -39.27841 -35.36354 -32.35023 -30.55673 -27.73218 -25.37938 -23.57273 -21.23625 -18.97082 -17.34366 -16.25749 -15.49740 -14.52149 -14.42368 -13.61090 -13.24119 -12.85853 -12.05480 -11.79533 -11.53469 -11.06617 -10.82614 -10.73106 -10.34219 -9.93602 -9.47972 -9.13544 -9.00811 -8.75096 -7.03098 -6.21190 -3.09660 3.35016 3.44191 3.65268 4.63569 4.77138 4.91359 5.07576 5.33313 5.47177 5.54643 5.64107 5.93153 6.00186 6.12242 6.24786 6.29774 6.32617 6.47648 6.56047 6.91973 7.22658 8.34015 8.39427 9.08023 9.60310 10.48635 11.30477 Molecular weight = 171.10amu Principal moments of inertia in cm(-1) A = 0.055286 B = 0.020217 C = 0.018332 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 506.335937 B = 1384.622182 C = 1526.991695 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.183 4.183 2 C 0.127 3.873 3 H 0.091 0.909 4 O -0.544 6.544 5 C -0.171 4.171 6 C 0.130 3.870 7 N -0.619 5.619 8 C -0.286 4.286 9 H 0.081 0.919 10 C -0.032 4.032 11 N -0.939 5.939 12 Si 1.073 2.927 13 H -0.296 1.296 14 H -0.297 1.297 15 H -0.290 1.290 16 C 0.100 3.900 17 H 0.056 0.944 18 H 0.059 0.941 19 H 0.060 0.940 20 H 0.376 0.624 21 H 0.077 0.923 22 H 0.045 0.955 23 H 0.034 0.966 24 H 0.260 0.740 25 H 0.045 0.955 26 H 0.045 0.955 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.193 7.623 -5.258 13.049 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.241 4.241 2 C 0.068 3.932 3 H 0.109 0.891 4 O -0.351 6.351 5 C -0.190 4.190 6 C 0.003 3.997 7 N -0.347 5.347 8 C -0.412 4.412 9 H 0.099 0.901 10 C -0.230 4.230 11 N -0.583 5.583 12 Si 0.907 3.093 13 H -0.223 1.223 14 H -0.226 1.226 15 H -0.218 1.218 16 C -0.026 4.026 17 H 0.075 0.925 18 H 0.078 0.922 19 H 0.079 0.921 20 H 0.225 0.775 21 H 0.095 0.905 22 H 0.063 0.937 23 H 0.052 0.948 24 H 0.070 0.930 25 H 0.062 0.938 26 H 0.063 0.937 Dipole moment (debyes) X Y Z Total from point charges -9.710 6.753 -4.678 12.719 hybrid contribution 0.748 0.764 -0.640 1.246 sum -8.962 7.517 -5.318 12.849 Atomic orbital electron populations 1.22515 0.97466 1.02246 1.01869 1.21385 0.91380 0.95809 0.84663 0.89123 1.86538 1.77560 1.29197 1.41760 1.23823 0.98743 0.97925 0.98522 1.22270 0.92351 0.90586 0.94449 1.45847 1.14089 1.25237 1.49535 1.20094 1.01278 0.98862 1.21006 0.90131 1.25625 1.05792 0.92374 0.99205 1.70896 1.05313 1.38133 1.43929 0.83677 0.74876 0.75282 0.75444 1.22294 1.22616 1.21769 1.22739 0.89085 0.93487 0.97281 0.92530 0.92235 0.92068 0.77497 0.90492 0.93694 0.94837 0.93037 0.93796 0.93739 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -2.47 9.53 37.16 0.35 -2.11 15 2 C 0.13 2.14 3.69 -26.73 -0.10 2.04 15 3 H 0.09 1.41 8.14 -51.93 -0.42 0.99 15 4 O -0.54 -11.57 12.18 -35.23 -0.43 -12.00 15 5 C -0.17 -2.98 4.07 -89.97 -0.37 -3.34 15 6 C 0.13 2.67 8.19 -8.52 -0.07 2.60 15 7 N -0.62 -15.48 2.57 -184.61 -0.48 -15.95 15 8 C -0.29 -8.42 11.07 -15.06 -0.17 -8.59 15 9 H 0.08 2.54 8.06 -52.49 -0.42 2.12 15 10 C -0.03 -0.97 5.50 -17.43 -0.10 -1.07 15 11 N -0.94 -30.27 13.71 55.49 0.76 -29.51 15 12 Si 1.07 26.89 24.90 -169.99 -4.23 22.66 15 13 H -0.30 -7.59 7.11 56.52 0.40 -7.19 15 14 H -0.30 -6.75 5.99 56.52 0.34 -6.41 15 15 H -0.29 -6.86 6.31 56.52 0.36 -6.50 15 16 C 0.10 2.11 4.77 -8.38 -0.04 2.07 15 17 H 0.06 0.78 8.14 -51.93 -0.42 0.35 15 18 H 0.06 0.76 8.14 -51.93 -0.42 0.34 15 19 H 0.06 0.68 8.14 -51.93 -0.42 0.26 15 20 H 0.38 8.21 6.35 45.56 0.29 8.50 15 21 H 0.08 1.11 8.14 -51.93 -0.42 0.68 15 22 H 0.04 0.92 8.12 -51.93 -0.42 0.50 15 23 H 0.03 0.66 8.14 -51.93 -0.42 0.23 15 24 H 0.26 8.31 8.73 -40.82 -0.36 7.96 15 25 H 0.04 0.92 7.78 -51.93 -0.40 0.51 15 26 H 0.04 0.95 3.50 -51.93 -0.18 0.77 15 LS Contribution 210.98 15.07 3.18 3.18 Total: -1.00 -32.30 210.98 -4.62 -36.92 By element: Atomic # 1 Polarization: 6.05 SS G_CDS: -2.94 Total: 3.11 kcal Atomic # 6 Polarization: -7.92 SS G_CDS: -0.48 Total: -8.40 kcal Atomic # 7 Polarization: -45.75 SS G_CDS: 0.29 Total: -45.47 kcal Atomic # 8 Polarization: -11.57 SS G_CDS: -0.43 Total: -12.00 kcal Atomic # 14 Polarization: 26.89 SS G_CDS: -4.23 Total: 22.66 kcal Total LS contribution 3.18 Total: 3.18 kcal Total: -32.30 -4.62 -36.92 kcal The number of atoms in the molecule is 26 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000642824878.mol2 26 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 48.112 kcal (2) G-P(sol) polarization free energy of solvation -32.303 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 15.809 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.617 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.920 kcal (6) G-S(sol) free energy of system = (1) + (5) 11.192 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.13 seconds