Wall clock time and date at job start Mon Mar 30 2020 02:16:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 H 1.09000 * 109.47176 * 2 1 4 4 O 1.42899 * 109.47424 * 120.00187 * 2 1 3 5 5 C 1.53004 * 109.46813 * 240.00107 * 2 1 3 6 6 C 1.53494 * 114.20233 * 180.02562 * 5 2 1 7 7 N 1.47067 * 87.98867 * 87.51802 * 6 5 2 8 8 C 1.36929 * 136.05969 * 207.08196 * 7 6 5 9 9 H 1.08002 * 120.00165 * 7.30172 * 8 7 6 10 10 C 1.38809 * 120.00098 * 187.29538 * 8 7 6 11 11 N 1.31620 * 120.00234 * 171.58054 * 10 8 7 12 12 Si 1.86806 * 119.99996 * 351.57783 * 10 8 7 13 13 H 1.48500 * 109.46899 * 178.01999 * 12 10 8 14 14 H 1.48491 * 109.46878 * 298.01952 * 12 10 8 15 15 H 1.48499 * 109.46678 * 58.02189 * 12 10 8 16 16 C 1.47071 * 87.88046 * 27.33925 * 7 6 5 17 17 H 1.08996 * 109.47413 * 180.02562 * 1 2 3 18 18 H 1.08998 * 109.47032 * 300.00497 * 1 2 3 19 19 H 1.09006 * 109.47184 * 59.99679 * 1 2 3 20 20 H 0.96701 * 114.00069 * 59.99336 * 4 2 1 21 21 H 1.08993 * 113.41700 * 46.80371 * 5 2 1 22 22 H 1.09000 * 113.47489 * 332.73647 * 6 5 2 23 23 H 1.09002 * 113.51957 * 202.30698 * 6 5 2 24 24 H 0.96996 * 119.99914 * 356.97156 * 11 10 8 25 25 H 1.09002 * 113.46549 * 87.44661 * 16 7 6 26 26 H 1.09001 * 113.46389 * 217.87710 * 16 7 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 8 2.0064 -0.6737 1.1667 5 6 2.0399 -0.7213 -1.2493 6 6 3.5696 -0.7851 -1.3587 7 7 3.5228 -2.0231 -0.5661 8 6 4.3698 -2.6817 0.2846 9 1 5.2966 -2.2188 0.5895 10 6 4.0371 -3.9445 0.7553 11 7 4.9182 -4.6464 1.4359 12 14 2.3387 -4.6477 0.4227 13 1 2.2521 -6.0194 0.9851 14 1 1.3122 -3.7853 1.0610 15 1 2.1019 -4.6976 -1.0425 16 6 2.1684 -2.2455 -1.0945 17 1 -0.3634 -1.0276 0.0005 18 1 -0.3633 0.5139 0.8899 19 1 -0.3634 0.5139 -0.8900 20 1 1.7210 -1.5952 1.2329 21 1 1.5388 -0.4081 -2.1652 22 1 4.0759 0.0361 -0.8515 23 1 3.9270 -0.9353 -2.3775 24 1 5.8141 -4.3002 1.5710 25 1 2.1554 -2.7809 -2.0439 26 1 1.4809 -2.6685 -0.3620 RHF calculation, no. of doubly occupied orbitals= 32 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000642824878.mol2 26 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:16:20 Heat of formation + Delta-G solvation = -14.022780 kcal Electronic energy + Delta-G solvation = -10566.457866 eV Core-core repulsion = 8646.431062 eV Total energy + Delta-G solvation = -1920.026804 eV No. of doubly occupied orbitals = 32 Molecular weight (most abundant/longest-lived isotopes) = 171.100 amu Computer time = 0.12 seconds Orbital eigenvalues (eV) -40.86267 -36.95551 -34.53250 -31.99686 -29.54689 -27.02712 -25.20275 -22.92881 -20.68869 -19.38580 -17.86305 -17.05671 -16.17562 -15.98077 -15.53460 -15.10656 -14.25476 -13.51878 -13.34115 -13.00624 -12.70185 -12.49721 -12.39938 -12.01573 -11.49995 -11.25554 -11.07776 -10.80700 -10.65459 -9.09837 -8.57716 -5.37118 1.36215 1.49797 1.69430 2.59055 3.05735 3.25400 3.47158 3.64266 4.01669 4.28599 4.42867 4.49452 4.68961 4.73955 4.77991 4.87045 4.95071 5.16263 5.26166 5.36771 5.46436 6.00239 6.76153 6.87493 7.40037 8.36522 8.96254 Molecular weight = 171.10amu Principal moments of inertia in cm(-1) A = 0.055286 B = 0.020217 C = 0.018332 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 506.335937 B = 1384.622182 C = 1526.991695 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.174 4.174 2 C 0.114 3.886 3 H 0.103 0.897 4 O -0.574 6.574 5 C -0.139 4.139 6 C 0.119 3.881 7 N -0.651 5.651 8 C -0.272 4.272 9 H 0.037 0.963 10 C -0.095 4.095 11 N -0.978 5.978 12 Si 1.114 2.886 13 H -0.310 1.310 14 H -0.261 1.261 15 H -0.264 1.264 16 C 0.091 3.909 17 H 0.054 0.946 18 H 0.063 0.937 19 H 0.092 0.908 20 H 0.369 0.631 21 H 0.126 0.874 22 H 0.035 0.965 23 H 0.051 0.949 24 H 0.242 0.758 25 H 0.057 0.943 26 H 0.048 0.952 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.065 8.818 -7.029 16.515 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.232 4.232 2 C 0.056 3.944 3 H 0.121 0.879 4 O -0.380 6.380 5 C -0.158 4.158 6 C -0.006 4.006 7 N -0.380 5.380 8 C -0.400 4.400 9 H 0.055 0.945 10 C -0.285 4.285 11 N -0.624 5.624 12 Si 0.940 3.060 13 H -0.238 1.238 14 H -0.188 1.188 15 H -0.189 1.189 16 C -0.034 4.034 17 H 0.073 0.927 18 H 0.082 0.918 19 H 0.111 0.889 20 H 0.217 0.783 21 H 0.144 0.856 22 H 0.054 0.946 23 H 0.069 0.931 24 H 0.050 0.950 25 H 0.075 0.925 26 H 0.065 0.935 Dipole moment (debyes) X Y Z Total from point charges -12.600 8.025 -6.491 16.288 hybrid contribution 1.734 0.538 -0.136 1.821 sum -10.866 8.564 -6.627 15.340 Atomic orbital electron populations 1.22418 0.94266 1.02755 1.03713 1.21777 0.93966 0.95731 0.82955 0.87936 1.86531 1.78518 1.28855 1.44129 1.23697 0.96198 0.95075 1.00791 1.22569 0.95316 0.88409 0.94295 1.45926 1.15571 1.26659 1.49810 1.19864 1.00282 0.98756 1.21085 0.94471 1.27117 1.08965 0.93230 0.99149 1.71022 1.05124 1.39400 1.46866 0.83238 0.71361 0.74307 0.77099 1.23816 1.18751 1.18907 1.22996 0.86565 0.96482 0.97325 0.92656 0.91803 0.88927 0.78251 0.85611 0.94624 0.93106 0.94961 0.92544 0.93473 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -3.82 9.53 71.98 0.69 -3.13 15 2 C 0.11 3.41 3.69 30.59 0.11 3.52 15 3 H 0.10 2.81 8.14 -2.39 -0.02 2.79 15 4 O -0.57 -23.43 12.18 -148.98 -1.81 -25.25 15 5 C -0.14 -4.19 4.07 -10.37 -0.04 -4.23 15 6 C 0.12 4.61 8.19 83.17 0.68 5.29 15 7 N -0.65 -31.76 2.57 -737.98 -1.90 -33.66 15 8 C -0.27 -16.39 11.07 84.03 0.93 -15.46 15 9 H 0.04 2.49 8.06 -2.91 -0.02 2.47 15 10 C -0.09 -5.79 5.50 84.86 0.47 -5.33 15 11 N -0.98 -65.40 13.71 21.65 0.30 -65.10 15 12 Si 1.11 53.36 24.90 68.60 1.71 55.07 15 13 H -0.31 -15.46 7.11 99.48 0.71 -14.76 15 14 H -0.26 -10.85 5.99 99.48 0.60 -10.26 15 15 H -0.26 -11.36 6.31 99.48 0.63 -10.74 15 16 C 0.09 3.49 4.77 83.26 0.40 3.88 15 17 H 0.05 1.24 8.14 -2.39 -0.02 1.22 15 18 H 0.06 1.36 8.14 -2.39 -0.02 1.34 15 19 H 0.09 1.47 8.14 -2.38 -0.02 1.46 15 20 H 0.37 15.50 6.35 -74.06 -0.47 15.03 15 21 H 0.13 2.72 8.14 -2.39 -0.02 2.70 15 22 H 0.04 1.42 8.12 -2.39 -0.02 1.40 15 23 H 0.05 1.82 8.14 -2.39 -0.02 1.80 15 24 H 0.24 16.38 8.73 -92.71 -0.81 15.57 15 25 H 0.06 2.08 7.78 -2.39 -0.02 2.06 15 26 H 0.05 1.81 3.50 -2.39 -0.01 1.80 15 Total: -1.00 -72.49 210.98 1.99 -70.50 By element: Atomic # 1 Polarization: 13.42 SS G_CDS: 0.46 Total: 13.88 kcal Atomic # 6 Polarization: -18.68 SS G_CDS: 3.23 Total: -15.45 kcal Atomic # 7 Polarization: -97.16 SS G_CDS: -1.60 Total: -98.76 kcal Atomic # 8 Polarization: -23.43 SS G_CDS: -1.81 Total: -25.25 kcal Atomic # 14 Polarization: 53.36 SS G_CDS: 1.71 Total: 55.07 kcal Total: -72.49 1.99 -70.50 kcal The number of atoms in the molecule is 26 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000642824878.mol2 26 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 56.482 kcal (2) G-P(sol) polarization free energy of solvation -72.491 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -16.010 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.987 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.504 kcal (6) G-S(sol) free energy of system = (1) + (5) -14.023 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.12 seconds