Wall clock time and date at job start Mon Mar 30 2020 02:05:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31581 * 1 3 3 Si 1.86798 * 120.00147 * 2 1 4 4 H 1.48498 * 109.47307 * 180.02562 * 3 2 1 5 5 H 1.48499 * 109.47441 * 300.00512 * 3 2 1 6 6 H 1.48498 * 109.47025 * 60.00150 * 3 2 1 7 7 C 1.38634 * 119.99883 * 180.02562 * 2 1 3 8 8 H 1.08008 * 120.00186 * 179.97438 * 7 2 1 9 9 O 1.34924 * 120.00274 * 359.97438 * 7 2 1 10 10 C 1.42900 * 117.00487 * 180.02562 * 9 7 2 11 11 C 1.52998 * 109.47401 * 180.02562 * 10 9 7 12 12 H 1.09006 * 112.90849 * 316.24828 * 11 10 9 13 13 C 1.53779 * 113.61561 * 87.49974 * 11 10 9 14 14 C 1.53784 * 87.08045 * 139.98260 * 13 11 10 15 15 H 1.08994 * 113.61477 * 89.11454 * 14 13 11 16 16 N 1.46897 * 113.61420 * 220.02146 * 14 13 11 17 17 C 1.53779 * 113.61250 * 185.00015 * 11 10 9 18 18 H 0.97000 * 119.99752 * 359.97438 * 1 2 3 19 19 H 1.09007 * 109.47160 * 59.99627 * 10 9 7 20 20 H 1.08998 * 109.46994 * 300.00233 * 10 9 7 21 21 H 1.09002 * 113.61557 * 25.43372 * 13 11 10 22 22 H 1.09004 * 113.61501 * 254.52792 * 13 11 10 23 23 H 1.00902 * 110.99853 * 277.49955 * 16 14 13 24 24 H 1.00899 * 111.00085 * 41.45121 * 16 14 13 25 25 H 1.08997 * 113.61646 * 105.47109 * 17 11 10 26 26 H 1.09000 * 113.61527 * 334.56380 * 17 11 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3158 0.0000 0.0000 3 14 2.2498 1.6177 0.0000 4 1 3.7098 1.3464 -0.0006 5 1 1.8911 2.3965 -1.2124 6 1 1.8911 2.3964 1.2125 7 6 2.0090 -1.2006 -0.0005 8 1 3.0890 -1.2007 -0.0010 9 8 1.3344 -2.3691 -0.0005 10 6 2.1126 -3.5676 -0.0005 11 6 1.1806 -4.7810 -0.0012 12 1 0.3467 -4.6758 0.6929 13 6 0.7571 -5.2317 -1.4091 14 6 0.9207 -6.6771 -0.9100 15 1 0.0159 -7.0902 -0.4645 16 7 1.5330 -7.5751 -1.8983 17 6 1.9185 -6.1245 0.1216 18 1 -0.4850 0.8401 0.0004 19 1 2.7415 -3.5925 0.8895 20 1 2.7414 -3.5925 -0.8905 21 1 1.4677 -4.9557 -2.1882 22 1 -0.2709 -4.9704 -1.6605 23 1 0.8450 -7.9137 -2.5542 24 1 2.2956 -7.1199 -2.3770 25 1 1.8281 -6.5840 1.1058 26 1 2.9466 -6.0926 -0.2390 RHF calculation, no. of doubly occupied orbitals= 32 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000642836363.mol2 26 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:05:10 Heat of formation + Delta-G solvation = -23.792566 kcal Electronic energy + Delta-G solvation = -9802.101205 eV Core-core repulsion = 7881.650751 eV Total energy + Delta-G solvation = -1920.450454 eV No. of doubly occupied orbitals = 32 Molecular weight (most abundant/longest-lived isotopes) = 171.100 amu Computer time = 0.11 seconds Orbital eigenvalues (eV) -38.94111 -35.86962 -32.17254 -31.33054 -26.77990 -25.31688 -24.07903 -21.04718 -19.24995 -17.39146 -16.03948 -15.37860 -14.57009 -14.46410 -13.93506 -13.55125 -12.63546 -12.14363 -12.01277 -11.50833 -11.25220 -10.95651 -10.61830 -10.35321 -10.16901 -9.84554 -9.38019 -9.08628 -8.49406 -7.92719 -5.92666 -3.55929 3.31723 3.34869 3.39519 4.31703 4.61188 4.97106 5.01249 5.14176 5.21643 5.40816 5.82704 6.03363 6.04725 6.16026 6.27801 6.28932 6.52406 6.68799 6.70502 6.96342 7.20644 7.50236 7.50772 8.45785 9.51030 10.21994 11.28864 Molecular weight = 171.10amu Principal moments of inertia in cm(-1) A = 0.114726 B = 0.009247 C = 0.009057 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 244.001612 B = 3027.388605 C = 3090.746222 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.890 5.890 2 C 0.021 3.979 3 Si 0.924 3.076 4 H -0.275 1.275 5 H -0.283 1.283 6 H -0.282 1.282 7 C -0.359 4.359 8 H 0.061 0.939 9 O -0.296 6.296 10 C 0.084 3.916 11 C -0.100 4.100 12 H 0.094 0.906 13 C -0.165 4.165 14 C 0.067 3.933 15 H 0.099 0.901 16 N -0.842 5.842 17 C -0.125 4.125 18 H 0.257 0.743 19 H 0.022 0.978 20 H 0.020 0.980 21 H 0.077 0.923 22 H 0.066 0.934 23 H 0.337 0.663 24 H 0.340 0.660 25 H 0.067 0.933 26 H 0.079 0.921 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.807 -9.828 -2.265 10.469 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.533 5.533 2 C -0.177 4.177 3 Si 0.752 3.248 4 H -0.199 1.199 5 H -0.209 1.209 6 H -0.209 1.209 7 C -0.438 4.438 8 H 0.079 0.921 9 O -0.211 6.211 10 C 0.007 3.993 11 C -0.119 4.119 12 H 0.112 0.888 13 C -0.204 4.204 14 C -0.045 4.045 15 H 0.117 0.883 16 N -0.370 5.370 17 C -0.163 4.163 18 H 0.067 0.933 19 H 0.040 0.960 20 H 0.038 0.962 21 H 0.095 0.905 22 H 0.085 0.915 23 H 0.149 0.851 24 H 0.153 0.847 25 H 0.086 0.914 26 H 0.098 0.902 Dipole moment (debyes) X Y Z Total from point charges 2.660 -10.212 -1.642 10.680 hybrid contribution 0.402 1.635 -0.701 1.824 sum 3.061 -8.577 -2.344 9.404 Atomic orbital electron populations 1.70036 1.05411 1.25707 1.52188 1.24955 0.95659 0.97730 0.99315 0.85902 0.78822 0.82391 0.77711 1.19942 1.20906 1.20866 1.20872 0.90185 0.82895 1.49897 0.92082 1.85632 1.31847 1.10428 1.93233 1.22061 0.92772 0.86948 0.97558 1.22303 0.99237 0.93017 0.97360 0.88759 1.23768 1.02042 0.96797 0.97820 1.22902 0.97568 0.89923 0.94098 0.88292 1.58746 1.14390 1.42490 1.21332 1.23050 0.98768 0.95548 0.98910 0.93328 0.96011 0.96171 0.90473 0.91547 0.85061 0.84681 0.91446 0.90210 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -28.53 13.67 55.48 0.76 -27.77 15 2 C 0.02 0.64 5.49 -17.51 -0.10 0.55 15 3 Si 0.92 22.49 29.55 -169.99 -5.02 17.46 15 4 H -0.27 -6.41 7.11 56.52 0.40 -6.00 15 5 H -0.28 -6.75 7.11 56.52 0.40 -6.34 15 6 H -0.28 -6.74 7.11 56.52 0.40 -6.34 15 7 C -0.36 -10.91 9.89 30.88 0.31 -10.61 15 8 H 0.06 1.75 7.77 -52.48 -0.41 1.34 15 9 O -0.30 -8.80 9.78 -16.49 -0.16 -8.96 15 10 C 0.08 1.93 5.85 37.16 0.22 2.15 15 11 C -0.10 -1.86 4.01 -89.81 -0.36 -2.22 15 12 H 0.09 1.84 8.14 -51.93 -0.42 1.41 15 13 C -0.16 -2.70 7.34 -25.92 -0.19 -2.89 15 14 C 0.07 0.91 5.01 -66.90 -0.33 0.57 15 15 H 0.10 1.27 8.14 -51.93 -0.42 0.85 15 16 N -0.84 -9.92 9.64 -3.98 -0.04 -9.95 15 17 C -0.12 -1.84 7.43 -25.92 -0.19 -2.03 15 18 H 0.26 7.63 8.31 -40.82 -0.34 7.29 15 19 H 0.02 0.49 8.14 -51.93 -0.42 0.06 15 20 H 0.02 0.45 7.84 -51.93 -0.41 0.04 15 21 H 0.08 1.27 7.79 -51.93 -0.40 0.86 15 22 H 0.07 1.13 8.14 -51.93 -0.42 0.70 15 23 H 0.34 3.36 9.08 -39.29 -0.36 3.00 15 24 H 0.34 3.80 8.84 -39.29 -0.35 3.46 15 25 H 0.07 0.93 8.14 -51.93 -0.42 0.50 15 26 H 0.08 1.15 8.10 -51.93 -0.42 0.73 15 LS Contribution 227.43 15.07 3.43 3.43 Total: -1.00 -33.43 227.43 -5.28 -38.71 By element: Atomic # 1 Polarization: 5.17 SS G_CDS: -3.59 Total: 1.57 kcal Atomic # 6 Polarization: -13.84 SS G_CDS: -0.65 Total: -14.49 kcal Atomic # 7 Polarization: -38.45 SS G_CDS: 0.72 Total: -37.73 kcal Atomic # 8 Polarization: -8.80 SS G_CDS: -0.16 Total: -8.96 kcal Atomic # 14 Polarization: 22.49 SS G_CDS: -5.02 Total: 17.46 kcal Total LS contribution 3.43 Total: 3.43 kcal Total: -33.43 -5.28 -38.71 kcal The number of atoms in the molecule is 26 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000642836363.mol2 26 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 14.917 kcal (2) G-P(sol) polarization free energy of solvation -33.429 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -18.512 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.280 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.709 kcal (6) G-S(sol) free energy of system = (1) + (5) -23.793 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.11 seconds