Wall clock time and date at job start Mon Mar 30 2020 02:05:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31581 * 1 3 3 Si 1.86798 * 120.00147 * 2 1 4 4 H 1.48498 * 109.47307 * 180.02562 * 3 2 1 5 5 H 1.48499 * 109.47441 * 300.00512 * 3 2 1 6 6 H 1.48498 * 109.47025 * 60.00150 * 3 2 1 7 7 C 1.38634 * 119.99883 * 180.02562 * 2 1 3 8 8 H 1.08008 * 120.00186 * 179.97438 * 7 2 1 9 9 O 1.34924 * 120.00274 * 359.97438 * 7 2 1 10 10 C 1.42900 * 117.00487 * 180.02562 * 9 7 2 11 11 C 1.52998 * 109.47401 * 180.02562 * 10 9 7 12 12 H 1.09006 * 112.90849 * 316.24828 * 11 10 9 13 13 C 1.53779 * 113.61561 * 87.49974 * 11 10 9 14 14 C 1.53784 * 87.08045 * 139.98260 * 13 11 10 15 15 H 1.08994 * 113.61477 * 89.11454 * 14 13 11 16 16 N 1.46897 * 113.61420 * 220.02146 * 14 13 11 17 17 C 1.53779 * 113.61250 * 185.00015 * 11 10 9 18 18 H 0.97000 * 119.99752 * 359.97438 * 1 2 3 19 19 H 1.09007 * 109.47160 * 59.99627 * 10 9 7 20 20 H 1.08998 * 109.46994 * 300.00233 * 10 9 7 21 21 H 1.09002 * 113.61557 * 25.43372 * 13 11 10 22 22 H 1.09004 * 113.61501 * 254.52792 * 13 11 10 23 23 H 1.00902 * 110.99853 * 277.49955 * 16 14 13 24 24 H 1.00899 * 111.00085 * 41.45121 * 16 14 13 25 25 H 1.08997 * 113.61646 * 105.47109 * 17 11 10 26 26 H 1.09000 * 113.61527 * 334.56380 * 17 11 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3158 0.0000 0.0000 3 14 2.2498 1.6177 0.0000 4 1 3.7098 1.3464 -0.0006 5 1 1.8911 2.3965 -1.2124 6 1 1.8911 2.3964 1.2125 7 6 2.0090 -1.2006 -0.0005 8 1 3.0890 -1.2007 -0.0010 9 8 1.3344 -2.3691 -0.0005 10 6 2.1126 -3.5676 -0.0005 11 6 1.1806 -4.7810 -0.0012 12 1 0.3467 -4.6758 0.6929 13 6 0.7571 -5.2317 -1.4091 14 6 0.9207 -6.6771 -0.9100 15 1 0.0159 -7.0902 -0.4645 16 7 1.5330 -7.5751 -1.8983 17 6 1.9185 -6.1245 0.1216 18 1 -0.4850 0.8401 0.0004 19 1 2.7415 -3.5925 0.8895 20 1 2.7414 -3.5925 -0.8905 21 1 1.4677 -4.9557 -2.1882 22 1 -0.2709 -4.9704 -1.6605 23 1 0.8450 -7.9137 -2.5542 24 1 2.2956 -7.1199 -2.3770 25 1 1.8281 -6.5840 1.1058 26 1 2.9466 -6.0926 -0.2390 RHF calculation, no. of doubly occupied orbitals= 32 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000642836363.mol2 26 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:05:10 Heat of formation + Delta-G solvation = -49.254196 kcal Electronic energy + Delta-G solvation = -9803.205304 eV Core-core repulsion = 7881.650751 eV Total energy + Delta-G solvation = -1921.554553 eV No. of doubly occupied orbitals = 32 Molecular weight (most abundant/longest-lived isotopes) = 171.100 amu Computer time = 0.12 seconds Orbital eigenvalues (eV) -40.28925 -37.92912 -34.04870 -32.89565 -28.51199 -26.61726 -26.22753 -22.48274 -20.62708 -19.56172 -17.53151 -17.06957 -16.06806 -15.97134 -15.81831 -15.13624 -14.45732 -13.55879 -13.45444 -13.37748 -12.87095 -12.79863 -12.15058 -11.96609 -11.76397 -11.46875 -11.30679 -11.00163 -10.17410 -9.54155 -8.21038 -5.91384 1.37788 1.43916 1.54884 2.31158 3.11632 3.40832 3.69019 3.73838 3.79255 4.00833 4.31879 4.50674 4.72595 4.75376 4.78740 4.88032 4.92149 5.11812 5.20790 5.24503 5.51750 6.18223 6.21546 6.62947 7.21729 8.03998 9.04429 Molecular weight = 171.10amu Principal moments of inertia in cm(-1) A = 0.114726 B = 0.009247 C = 0.009057 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 244.001612 B = 3027.388605 C = 3090.746222 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.940 5.940 2 C -0.043 4.043 3 Si 1.008 2.992 4 H -0.257 1.257 5 H -0.274 1.274 6 H -0.274 1.274 7 C -0.383 4.383 8 H 0.071 0.929 9 O -0.338 6.338 10 C 0.079 3.921 11 C -0.113 4.113 12 H 0.079 0.921 13 C -0.167 4.167 14 C 0.088 3.912 15 H 0.112 0.888 16 N -0.838 5.838 17 C -0.111 4.111 18 H 0.261 0.739 19 H 0.024 0.976 20 H 0.025 0.975 21 H 0.075 0.925 22 H 0.054 0.946 23 H 0.350 0.650 24 H 0.346 0.654 25 H 0.082 0.918 26 H 0.086 0.914 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.913 -10.260 -2.493 11.260 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.585 5.585 2 C -0.236 4.236 3 Si 0.830 3.170 4 H -0.181 1.181 5 H -0.199 1.199 6 H -0.199 1.199 7 C -0.462 4.462 8 H 0.088 0.912 9 O -0.254 6.254 10 C 0.002 3.998 11 C -0.132 4.132 12 H 0.097 0.903 13 C -0.207 4.207 14 C -0.024 4.024 15 H 0.130 0.870 16 N -0.367 5.367 17 C -0.149 4.149 18 H 0.070 0.930 19 H 0.042 0.958 20 H 0.043 0.957 21 H 0.093 0.907 22 H 0.072 0.928 23 H 0.164 0.836 24 H 0.159 0.841 25 H 0.101 0.899 26 H 0.104 0.896 Dipole moment (debyes) X Y Z Total from point charges 3.780 -10.683 -1.882 11.488 hybrid contribution 0.062 1.693 -0.640 1.811 sum 3.842 -8.991 -2.521 10.097 Atomic orbital electron populations 1.70207 1.07664 1.27253 1.53385 1.26283 0.96802 1.02138 0.98358 0.84661 0.77984 0.76238 0.78111 1.18096 1.19934 1.19915 1.21407 0.90854 0.83783 1.50115 0.91173 1.85572 1.34333 1.12032 1.93507 1.22374 0.93640 0.86163 0.97654 1.22365 0.98945 0.93078 0.98837 0.90277 1.23825 1.01157 0.99256 0.96450 1.22707 0.97601 0.88367 0.93761 0.87049 1.58720 1.14778 1.41478 1.21677 1.22993 0.98978 0.92621 1.00312 0.92979 0.95832 0.95695 0.90674 0.92753 0.83591 0.84106 0.89933 0.89565 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.94 -61.39 13.67 21.61 0.30 -61.09 15 2 C -0.04 -2.60 5.49 84.83 0.47 -2.14 15 3 Si 1.01 45.99 29.55 68.60 2.03 48.01 15 4 H -0.26 -10.87 7.11 99.48 0.71 -10.17 15 5 H -0.27 -12.01 7.11 99.48 0.71 -11.30 15 6 H -0.27 -12.01 7.11 99.48 0.71 -11.30 15 7 C -0.38 -23.58 9.89 67.91 0.67 -22.90 15 8 H 0.07 4.03 7.77 -2.91 -0.02 4.01 15 9 O -0.34 -20.66 9.78 -81.93 -0.80 -21.46 15 10 C 0.08 3.65 5.85 71.98 0.42 4.07 15 11 C -0.11 -4.20 4.01 -10.27 -0.04 -4.24 15 12 H 0.08 3.15 8.14 -2.38 -0.02 3.13 15 13 C -0.17 -5.40 7.34 31.12 0.23 -5.17 15 14 C 0.09 2.20 5.01 45.45 0.23 2.42 15 15 H 0.11 2.57 8.14 -2.39 -0.02 2.55 15 16 N -0.84 -17.37 9.64 -166.49 -1.60 -18.97 15 17 C -0.11 -3.06 7.43 31.12 0.23 -2.83 15 18 H 0.26 15.74 8.31 -92.71 -0.77 14.97 15 19 H 0.02 1.06 8.14 -2.38 -0.02 1.04 15 20 H 0.02 1.11 7.84 -2.39 -0.02 1.10 15 21 H 0.07 2.43 7.79 -2.39 -0.02 2.41 15 22 H 0.05 1.85 8.14 -2.39 -0.02 1.84 15 23 H 0.35 5.97 9.08 -89.69 -0.81 5.16 15 24 H 0.35 6.80 8.84 -89.69 -0.79 6.01 15 25 H 0.08 2.06 8.14 -2.39 -0.02 2.04 15 26 H 0.09 2.29 8.10 -2.39 -0.02 2.27 15 Total: -1.00 -72.25 227.43 1.69 -70.56 By element: Atomic # 1 Polarization: 14.18 SS G_CDS: -0.43 Total: 13.75 kcal Atomic # 6 Polarization: -33.00 SS G_CDS: 2.21 Total: -30.80 kcal Atomic # 7 Polarization: -78.75 SS G_CDS: -1.31 Total: -80.06 kcal Atomic # 8 Polarization: -20.66 SS G_CDS: -0.80 Total: -21.46 kcal Atomic # 14 Polarization: 45.99 SS G_CDS: 2.03 Total: 48.01 kcal Total: -72.25 1.69 -70.56 kcal The number of atoms in the molecule is 26 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000642836363.mol2 26 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 21.309 kcal (2) G-P(sol) polarization free energy of solvation -72.252 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -50.944 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.689 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.563 kcal (6) G-S(sol) free energy of system = (1) + (5) -49.254 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.12 seconds