Wall clock time and date at job start Mon Mar 30 2020 02:05:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31618 * 1 3 3 Si 1.86796 * 120.00296 * 2 1 4 4 H 1.48507 * 109.46678 * 269.99676 * 3 2 1 5 5 H 1.48497 * 109.47039 * 29.99112 * 3 2 1 6 6 H 1.48498 * 109.47444 * 149.99676 * 3 2 1 7 7 C 1.38812 * 119.99726 * 179.97438 * 2 1 3 8 8 H 1.07998 * 120.00108 * 0.02562 * 7 2 1 9 9 N 1.36937 * 119.99821 * 180.02562 * 7 2 1 10 10 C 1.46508 * 119.99972 * 179.97438 * 9 7 2 11 11 H 1.09006 * 112.85122 * 336.19439 * 10 9 7 12 12 C 1.53779 * 113.69115 * 107.46271 * 10 9 7 13 13 C 1.53784 * 87.08045 * 139.99342 * 12 10 9 14 14 H 1.08994 * 113.61477 * 89.11454 * 13 12 10 15 15 C 1.52997 * 113.61270 * 220.02125 * 13 12 10 16 16 O 1.42902 * 109.47204 * 272.49576 * 15 13 12 17 17 C 1.53779 * 113.61245 * 205.00077 * 10 9 7 18 18 H 0.96998 * 120.00043 * 0.02562 * 1 2 3 19 19 H 0.96996 * 120.00401 * 0.02562 * 9 7 2 20 20 H 1.09002 * 113.61557 * 25.44454 * 12 10 9 21 21 H 1.09004 * 113.61501 * 254.53874 * 12 10 9 22 22 H 1.08998 * 109.47573 * 32.49481 * 15 13 12 23 23 H 1.09003 * 109.47157 * 152.50001 * 15 13 12 24 24 H 0.96701 * 113.99899 * 180.02562 * 16 15 13 25 25 H 1.08997 * 113.61646 * 105.38794 * 17 10 9 26 26 H 1.09000 * 113.61527 * 334.48065 * 17 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6176 0.0000 4 1 2.4978 2.0462 -1.4002 5 1 1.4477 2.6526 0.6998 6 1 3.5478 1.4401 0.7001 7 6 2.0102 -1.2022 0.0005 8 1 1.4702 -2.1375 0.0005 9 7 3.3796 -1.2022 0.0011 10 6 4.1121 -2.4710 0.0022 11 1 3.5276 -3.2968 0.4080 12 6 4.7875 -2.7957 -1.3406 13 6 5.9842 -3.3117 -0.5242 14 1 5.9116 -4.3672 -0.2623 15 6 7.3415 -2.9388 -1.1238 16 8 7.7340 -3.9348 -2.0703 17 6 5.5257 -2.3656 0.5982 18 1 -0.4850 0.8400 -0.0004 19 1 3.8646 -0.3622 0.0014 20 1 5.0151 -1.9139 -1.9394 21 1 4.2782 -3.5744 -1.9085 22 1 7.2652 -1.9730 -1.6232 23 1 8.0856 -2.8792 -0.3294 24 1 8.5877 -3.7630 -2.4909 25 1 5.6125 -2.7969 1.5954 26 1 5.9552 -1.3661 0.5294 RHF calculation, no. of doubly occupied orbitals= 32 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000642846744.mol2 26 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:05:11 Heat of formation + Delta-G solvation = -48.309810 kcal Electronic energy + Delta-G solvation = -9854.675560 eV Core-core repulsion = 7933.161959 eV Total energy + Delta-G solvation = -1921.513601 eV No. of doubly occupied orbitals = 32 Molecular weight (most abundant/longest-lived isotopes) = 171.100 amu Computer time = 0.13 seconds Orbital eigenvalues (eV) -40.17059 -37.30053 -35.42983 -32.82269 -28.68703 -26.48260 -25.45967 -22.30745 -20.80648 -19.43571 -18.11797 -17.00217 -16.24032 -16.10200 -15.34586 -14.77573 -14.44368 -13.81023 -13.41987 -13.26722 -12.82870 -12.58374 -12.09759 -11.90229 -11.67789 -11.60288 -11.22856 -10.88280 -10.68192 -9.28821 -8.03635 -5.37089 1.36904 1.41335 1.48717 2.48033 3.24142 3.31399 3.65430 3.81525 3.96827 4.17959 4.27710 4.53780 4.57047 4.74487 4.90733 4.95683 5.01040 5.20841 5.37003 5.61787 5.76626 6.21814 6.97613 7.06635 7.83413 8.03702 9.18208 Molecular weight = 171.10amu Principal moments of inertia in cm(-1) A = 0.081773 B = 0.010872 C = 0.010335 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 342.330906 B = 2574.730118 C = 2708.700916 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.986 5.986 2 C -0.066 4.066 3 Si 0.959 3.041 4 H -0.278 1.278 5 H -0.295 1.295 6 H -0.249 1.249 7 C -0.239 4.239 8 H 0.054 0.946 9 N -0.742 5.742 10 C 0.144 3.856 11 H 0.070 0.930 12 C -0.156 4.156 13 C -0.100 4.100 14 H 0.094 0.906 15 C 0.090 3.910 16 O -0.594 6.594 17 C -0.130 4.130 18 H 0.258 0.742 19 H 0.367 0.633 20 H 0.071 0.929 21 H 0.048 0.952 22 H 0.049 0.951 23 H 0.065 0.935 24 H 0.395 0.605 25 H 0.081 0.919 26 H 0.086 0.914 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 17.323 -3.244 -1.013 17.653 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.636 5.636 2 C -0.257 4.257 3 Si 0.786 3.214 4 H -0.205 1.205 5 H -0.221 1.221 6 H -0.173 1.173 7 C -0.370 4.370 8 H 0.072 0.928 9 N -0.383 5.383 10 C 0.036 3.964 11 H 0.089 0.911 12 C -0.197 4.197 13 C -0.119 4.119 14 H 0.112 0.888 15 C 0.013 3.987 16 O -0.402 6.402 17 C -0.169 4.169 18 H 0.067 0.933 19 H 0.201 0.799 20 H 0.090 0.910 21 H 0.067 0.933 22 H 0.067 0.933 23 H 0.084 0.916 24 H 0.245 0.755 25 H 0.099 0.901 26 H 0.105 0.895 Dipole moment (debyes) X Y Z Total from point charges 16.528 -3.581 -0.815 16.931 hybrid contribution 0.235 1.204 -0.278 1.258 sum 16.763 -2.377 -1.093 16.966 Atomic orbital electron populations 1.69896 1.07263 1.26779 1.59676 1.25568 0.96178 1.01474 1.02517 0.85352 0.78727 0.79247 0.78117 1.20461 1.22122 1.17295 1.19136 0.82915 0.93494 1.41407 0.92786 1.42731 1.02390 1.03888 1.89333 1.21907 0.91113 0.87943 0.95484 0.91140 1.23742 0.97454 1.00084 0.98411 1.22265 0.93250 0.99893 0.96479 0.88757 1.22162 0.95015 0.90275 0.91288 1.86456 1.43634 1.50245 1.59882 1.23332 0.95313 0.99873 0.98342 0.93295 0.79907 0.91001 0.93286 0.93301 0.91640 0.75530 0.90052 0.89501 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.99 -64.29 13.97 21.65 0.30 -63.99 15 2 C -0.07 -3.97 5.50 84.86 0.47 -3.50 15 3 Si 0.96 45.76 27.74 68.60 1.90 47.66 15 4 H -0.28 -12.97 7.11 99.48 0.71 -12.26 15 5 H -0.29 -14.18 7.11 99.48 0.71 -13.47 15 6 H -0.25 -10.56 6.52 99.48 0.65 -9.92 15 7 C -0.24 -13.96 10.45 84.03 0.88 -13.08 15 8 H 0.05 3.47 8.06 -2.91 -0.02 3.45 15 9 N -0.74 -35.35 5.21 -320.43 -1.67 -37.02 15 10 C 0.14 5.60 4.48 45.51 0.20 5.80 15 11 H 0.07 2.88 8.10 -2.38 -0.02 2.86 15 12 C -0.16 -5.38 7.43 31.12 0.23 -5.14 15 13 C -0.10 -2.71 4.01 -10.27 -0.04 -2.75 15 14 H 0.09 2.53 8.14 -2.39 -0.02 2.51 15 15 C 0.09 1.97 6.88 71.98 0.50 2.46 15 16 O -0.59 -13.22 13.66 -148.98 -2.04 -15.26 15 17 C -0.13 -3.74 7.39 31.12 0.23 -3.51 15 18 H 0.26 15.97 8.31 -92.71 -0.77 15.20 15 19 H 0.37 16.50 5.78 -92.71 -0.54 15.96 15 20 H 0.07 2.51 7.90 -2.39 -0.02 2.49 15 21 H 0.05 1.75 8.14 -2.39 -0.02 1.73 15 22 H 0.05 1.04 7.84 -2.39 -0.02 1.02 15 23 H 0.07 1.14 8.14 -2.39 -0.02 1.12 15 24 H 0.40 4.66 9.12 -74.06 -0.68 3.99 15 25 H 0.08 2.10 8.14 -2.39 -0.02 2.08 15 26 H 0.09 2.35 8.08 -2.39 -0.02 2.33 15 Total: -1.00 -70.11 223.21 0.87 -69.24 By element: Atomic # 1 Polarization: 19.19 SS G_CDS: -0.10 Total: 19.09 kcal Atomic # 6 Polarization: -22.19 SS G_CDS: 2.46 Total: -19.73 kcal Atomic # 7 Polarization: -99.64 SS G_CDS: -1.37 Total: -101.01 kcal Atomic # 8 Polarization: -13.22 SS G_CDS: -2.04 Total: -15.26 kcal Atomic # 14 Polarization: 45.76 SS G_CDS: 1.90 Total: 47.66 kcal Total: -70.11 0.87 -69.24 kcal The number of atoms in the molecule is 26 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000642846744.mol2 26 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 20.931 kcal (2) G-P(sol) polarization free energy of solvation -70.109 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -49.178 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.868 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.241 kcal (6) G-S(sol) free energy of system = (1) + (5) -48.310 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.13 seconds