Wall clock time and date at job start Mon Mar 30 2020 01:47:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46903 * 1 3 3 C 1.47962 * 111.00056 * 2 1 4 4 C 1.53935 * 86.30001 * 137.63674 * 3 2 1 5 5 C 1.48308 * 111.10591 * 99.24764 * 2 1 3 6 6 H 1.09003 * 113.75915 * 336.77907 * 5 2 1 7 7 C 1.52997 * 113.85647 * 108.12208 * 5 2 1 8 8 N 1.46497 * 109.47562 * 281.61585 * 7 5 2 9 9 C 1.36942 * 120.00397 * 180.02562 * 8 7 5 10 10 H 1.08003 * 119.99351 * 359.97438 * 9 8 7 11 11 C 1.38804 * 120.00338 * 179.97438 * 9 8 7 12 12 N 1.31620 * 119.99829 * 0.02562 * 11 9 8 13 13 Si 1.86794 * 120.00211 * 179.97438 * 11 9 8 14 14 H 1.48496 * 109.47171 * 59.99990 * 13 11 9 15 15 H 1.48497 * 109.47400 * 180.02562 * 13 11 9 16 16 H 1.48500 * 109.47076 * 299.99962 * 13 11 9 17 17 H 1.09001 * 109.46717 * 81.53018 * 1 2 3 18 18 H 1.08995 * 109.47238 * 201.52309 * 1 2 3 19 19 H 1.09000 * 109.46983 * 321.53195 * 1 2 3 20 20 H 1.09002 * 113.76087 * 23.26139 * 3 2 1 21 21 H 1.09005 * 113.75858 * 252.00601 * 3 2 1 22 22 H 1.09000 * 113.73561 * 90.58655 * 4 3 2 23 23 H 1.09007 * 113.72883 * 221.75679 * 4 3 2 24 24 H 1.09006 * 109.47267 * 41.61715 * 7 5 2 25 25 H 1.09005 * 109.47199 * 161.61036 * 7 5 2 26 26 H 0.97001 * 119.99785 * 359.97438 * 8 7 5 27 27 H 0.96999 * 120.00150 * 180.02562 * 12 11 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9993 1.3813 0.0000 4 6 3.0233 0.8818 1.0351 5 6 2.0031 -0.2223 1.3656 6 1 1.3059 0.0470 2.1591 7 6 2.6319 -1.6025 1.5670 8 7 1.5742 -2.5982 1.7568 9 6 1.8997 -3.9132 1.9573 10 1 2.9361 -4.2162 1.9751 11 6 0.8975 -4.8565 2.1377 12 7 -0.3656 -4.4871 2.1156 13 14 1.3414 -6.6503 2.4105 14 1 2.1745 -6.7736 3.6335 15 1 0.0997 -7.4482 2.5742 16 1 2.1029 -7.1553 1.2399 17 1 -0.3633 0.1514 -1.0165 18 1 -0.3633 -0.9560 0.3770 19 1 -0.3633 0.8046 0.6393 20 1 1.3010 2.1198 0.3940 21 1 2.4444 1.6809 -0.9489 22 1 3.9470 0.5079 0.5933 23 1 3.1964 1.5808 1.8535 24 1 3.2236 -1.8638 0.6896 25 1 3.2755 -1.5837 2.4466 26 1 0.6434 -2.3259 1.7413 27 1 -1.0660 -5.1462 2.2420 RHF calculation, no. of doubly occupied orbitals= 32 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000642874814.mol2 27 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:47:29 Heat of formation + Delta-G solvation = 44.332038 kcal Electronic energy + Delta-G solvation = -9904.345368 eV Core-core repulsion = 8084.567680 eV Total energy + Delta-G solvation = -1819.777687 eV No. of doubly occupied orbitals = 32 Molecular weight (most abundant/longest-lived isotopes) = 170.111 amu Computer time = 0.11 seconds Orbital eigenvalues (eV) -39.48523 -34.27321 -31.15933 -30.10041 -27.14251 -23.72201 -23.65490 -21.60279 -19.25448 -17.00700 -15.69018 -14.85238 -14.70698 -14.22531 -13.17268 -12.95090 -12.75447 -12.40720 -11.54157 -11.19817 -11.10025 -10.86362 -10.72043 -10.37401 -10.29941 -9.89084 -9.58566 -8.79866 -8.39093 -6.82338 -5.69191 -2.96481 3.49388 3.53018 3.54521 4.25696 4.64859 4.82533 5.08149 5.48767 5.55415 5.63681 5.68494 5.80882 5.87507 5.97001 6.02094 6.27232 6.40362 6.43952 6.63074 6.84019 7.00943 7.49632 7.76424 8.50364 9.60946 10.20499 10.55270 11.54243 Molecular weight = 170.11amu Principal moments of inertia in cm(-1) A = 0.087951 B = 0.011197 C = 0.010289 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 318.282138 B = 2499.976533 C = 2720.705773 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.009 4.009 2 N -0.472 5.472 3 C -0.005 4.005 4 C -0.140 4.140 5 C 0.028 3.972 6 H 0.076 0.924 7 C 0.170 3.830 8 N -0.730 5.730 9 C -0.235 4.235 10 H 0.070 0.930 11 C -0.017 4.017 12 N -0.937 5.937 13 Si 0.908 3.092 14 H -0.287 1.287 15 H -0.292 1.292 16 H -0.286 1.286 17 H 0.063 0.937 18 H 0.081 0.919 19 H 0.026 0.974 20 H 0.062 0.938 21 H 0.082 0.918 22 H 0.090 0.910 23 H 0.067 0.933 24 H 0.029 0.971 25 H 0.023 0.977 26 H 0.382 0.618 27 H 0.254 0.746 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.698 10.407 -2.089 11.241 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.158 4.158 2 N -0.194 5.194 3 C -0.134 4.134 4 C -0.179 4.179 5 C -0.082 4.082 6 H 0.093 0.907 7 C 0.042 3.958 8 N -0.374 5.374 9 C -0.367 4.367 10 H 0.088 0.912 11 C -0.212 4.212 12 N -0.586 5.586 13 Si 0.739 3.261 14 H -0.213 1.213 15 H -0.218 1.218 16 H -0.213 1.213 17 H 0.081 0.919 18 H 0.099 0.901 19 H 0.045 0.955 20 H 0.081 0.919 21 H 0.101 0.899 22 H 0.108 0.892 23 H 0.085 0.915 24 H 0.047 0.953 25 H 0.041 0.959 26 H 0.215 0.785 27 H 0.064 0.936 Dipole moment (debyes) X Y Z Total from point charges 3.928 9.788 -2.605 10.864 hybrid contribution -0.606 -0.386 0.745 1.035 sum 3.323 9.402 -1.861 10.144 Atomic orbital electron populations 1.22858 0.89718 1.02096 1.01127 1.68600 1.09119 1.16557 1.25147 1.23900 0.97556 0.92147 0.99837 1.23334 0.98420 0.97607 0.98492 1.23768 0.96305 0.97085 0.91000 0.90654 1.20561 0.91749 0.85950 0.97500 1.42297 1.04177 1.03900 1.87050 1.19224 0.92505 0.84363 1.40574 0.91238 1.24722 0.95227 0.98070 1.03190 1.69648 0.98259 1.33257 1.57448 0.86244 0.76776 0.85084 0.77964 1.21338 1.21754 1.21307 0.91866 0.90065 0.95529 0.91950 0.89933 0.89168 0.91460 0.95330 0.95935 0.78479 0.93583 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.01 -0.15 9.67 60.07 0.58 0.43 15 2 N -0.47 -8.27 6.38 -237.88 -1.52 -9.79 15 3 C -0.01 -0.07 7.96 -2.77 -0.02 -0.09 15 4 C -0.14 -1.94 7.85 -25.79 -0.20 -2.14 15 5 C 0.03 0.49 3.36 -66.47 -0.22 0.27 15 6 H 0.08 1.35 7.93 -51.93 -0.41 0.94 15 7 C 0.17 3.69 6.30 -4.04 -0.03 3.67 15 8 N -0.73 -19.55 5.60 -59.91 -0.34 -19.89 15 9 C -0.24 -6.88 9.99 -15.06 -0.15 -7.03 15 10 H 0.07 1.96 7.83 -52.48 -0.41 1.55 15 11 C -0.02 -0.49 5.50 -17.43 -0.10 -0.59 15 12 N -0.94 -29.15 13.06 55.49 0.72 -28.42 15 13 Si 0.91 23.04 29.55 -169.99 -5.02 18.02 15 14 H -0.29 -7.12 7.11 56.52 0.40 -6.71 15 15 H -0.29 -7.41 7.11 56.52 0.40 -7.01 15 16 H -0.29 -7.16 7.11 56.52 0.40 -6.76 15 17 H 0.06 0.97 8.14 -51.93 -0.42 0.54 15 18 H 0.08 1.60 7.31 -51.93 -0.38 1.22 15 19 H 0.03 0.39 7.60 -51.93 -0.39 0.00 15 20 H 0.06 0.76 7.60 -51.93 -0.39 0.37 15 21 H 0.08 1.02 8.14 -51.93 -0.42 0.59 15 22 H 0.09 1.22 8.10 -51.93 -0.42 0.80 15 23 H 0.07 0.79 8.14 -51.93 -0.42 0.37 15 24 H 0.03 0.65 8.14 -51.93 -0.42 0.22 15 25 H 0.02 0.48 8.14 -51.93 -0.42 0.06 15 26 H 0.38 10.64 6.84 -40.82 -0.28 10.36 15 27 H 0.25 7.64 8.31 -40.82 -0.34 7.30 15 LS Contribution 228.77 15.07 3.45 3.45 Total: -1.00 -31.48 228.77 -6.78 -38.26 By element: Atomic # 1 Polarization: 7.80 SS G_CDS: -3.94 Total: 3.86 kcal Atomic # 6 Polarization: -5.35 SS G_CDS: -0.14 Total: -5.49 kcal Atomic # 7 Polarization: -56.97 SS G_CDS: -1.13 Total: -58.10 kcal Atomic # 14 Polarization: 23.04 SS G_CDS: -5.02 Total: 18.02 kcal Total LS contribution 3.45 Total: 3.45 kcal Total: -31.48 -6.78 -38.26 kcal The number of atoms in the molecule is 27 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000642874814.mol2 27 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 82.591 kcal (2) G-P(sol) polarization free energy of solvation -31.476 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 51.115 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.783 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.259 kcal (6) G-S(sol) free energy of system = (1) + (5) 44.332 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.11 seconds