Wall clock time and date at job start Mon Mar 30 2020 01:47:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46903 * 1 3 3 C 1.47962 * 111.00056 * 2 1 4 4 C 1.53935 * 86.30001 * 137.63674 * 3 2 1 5 5 C 1.48308 * 111.10591 * 99.24764 * 2 1 3 6 6 H 1.09003 * 113.75915 * 336.77907 * 5 2 1 7 7 C 1.52997 * 113.85647 * 108.12208 * 5 2 1 8 8 N 1.46497 * 109.47562 * 281.61585 * 7 5 2 9 9 C 1.36942 * 120.00397 * 180.02562 * 8 7 5 10 10 H 1.08003 * 119.99351 * 359.97438 * 9 8 7 11 11 C 1.38804 * 120.00338 * 179.97438 * 9 8 7 12 12 N 1.31620 * 119.99829 * 0.02562 * 11 9 8 13 13 Si 1.86794 * 120.00211 * 179.97438 * 11 9 8 14 14 H 1.48496 * 109.47171 * 59.99990 * 13 11 9 15 15 H 1.48497 * 109.47400 * 180.02562 * 13 11 9 16 16 H 1.48500 * 109.47076 * 299.99962 * 13 11 9 17 17 H 1.09001 * 109.46717 * 81.53018 * 1 2 3 18 18 H 1.08995 * 109.47238 * 201.52309 * 1 2 3 19 19 H 1.09000 * 109.46983 * 321.53195 * 1 2 3 20 20 H 1.09002 * 113.76087 * 23.26139 * 3 2 1 21 21 H 1.09005 * 113.75858 * 252.00601 * 3 2 1 22 22 H 1.09000 * 113.73561 * 90.58655 * 4 3 2 23 23 H 1.09007 * 113.72883 * 221.75679 * 4 3 2 24 24 H 1.09006 * 109.47267 * 41.61715 * 7 5 2 25 25 H 1.09005 * 109.47199 * 161.61036 * 7 5 2 26 26 H 0.97001 * 119.99785 * 359.97438 * 8 7 5 27 27 H 0.96999 * 120.00150 * 180.02562 * 12 11 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9993 1.3813 0.0000 4 6 3.0233 0.8818 1.0351 5 6 2.0031 -0.2223 1.3656 6 1 1.3059 0.0470 2.1591 7 6 2.6319 -1.6025 1.5670 8 7 1.5742 -2.5982 1.7568 9 6 1.8997 -3.9132 1.9573 10 1 2.9361 -4.2162 1.9751 11 6 0.8975 -4.8565 2.1377 12 7 -0.3656 -4.4871 2.1156 13 14 1.3414 -6.6503 2.4105 14 1 2.1745 -6.7736 3.6335 15 1 0.0997 -7.4482 2.5742 16 1 2.1029 -7.1553 1.2399 17 1 -0.3633 0.1514 -1.0165 18 1 -0.3633 -0.9560 0.3770 19 1 -0.3633 0.8046 0.6393 20 1 1.3010 2.1198 0.3940 21 1 2.4444 1.6809 -0.9489 22 1 3.9470 0.5079 0.5933 23 1 3.1964 1.5808 1.8535 24 1 3.2236 -1.8638 0.6896 25 1 3.2755 -1.5837 2.4466 26 1 0.6434 -2.3259 1.7413 27 1 -1.0660 -5.1462 2.2420 RHF calculation, no. of doubly occupied orbitals= 32 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000642874814.mol2 27 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:47:28 Heat of formation + Delta-G solvation = 20.022143 kcal Electronic energy + Delta-G solvation = -9905.399524 eV Core-core repulsion = 8084.567680 eV Total energy + Delta-G solvation = -1820.831843 eV No. of doubly occupied orbitals = 32 Molecular weight (most abundant/longest-lived isotopes) = 170.111 amu Computer time = 0.13 seconds Orbital eigenvalues (eV) -40.76819 -36.30859 -33.20151 -31.45485 -28.87291 -25.54933 -24.98690 -23.30138 -20.59845 -19.09889 -17.04187 -16.64073 -16.18436 -15.84370 -15.05080 -14.78837 -14.08481 -13.97426 -13.12535 -13.03511 -12.68906 -12.41196 -12.28854 -12.18910 -11.83605 -11.57784 -11.38514 -10.94201 -9.67091 -8.99152 -7.95074 -5.23738 1.46381 1.50708 1.56678 2.56287 3.01050 3.38876 3.60185 3.83475 4.15983 4.30880 4.39536 4.47074 4.53316 4.66017 4.82065 4.87666 5.00637 5.06863 5.09498 5.32064 5.47052 5.58151 6.19586 6.27825 7.32864 8.09665 8.33588 9.28757 Molecular weight = 170.11amu Principal moments of inertia in cm(-1) A = 0.087951 B = 0.011197 C = 0.010289 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 318.282138 B = 2499.976533 C = 2720.705773 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.003 4.003 2 N -0.501 5.501 3 C 0.004 3.996 4 C -0.123 4.123 5 C 0.021 3.979 6 H 0.071 0.929 7 C 0.168 3.832 8 N -0.744 5.744 9 C -0.249 4.249 10 H 0.075 0.925 11 C -0.078 4.078 12 N -0.972 5.972 13 Si 0.978 3.022 14 H -0.275 1.275 15 H -0.294 1.294 16 H -0.279 1.279 17 H 0.075 0.925 18 H 0.041 0.959 19 H 0.046 0.954 20 H 0.082 0.918 21 H 0.099 0.901 22 H 0.093 0.907 23 H 0.094 0.906 24 H 0.019 0.981 25 H 0.029 0.971 26 H 0.372 0.628 27 H 0.251 0.749 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.739 11.300 -2.187 12.447 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 N -0.225 5.225 3 C -0.124 4.124 4 C -0.162 4.162 5 C -0.088 4.088 6 H 0.089 0.911 7 C 0.042 3.958 8 N -0.386 5.386 9 C -0.381 4.381 10 H 0.093 0.907 11 C -0.270 4.270 12 N -0.623 5.623 13 Si 0.807 3.193 14 H -0.201 1.201 15 H -0.220 1.220 16 H -0.205 1.205 17 H 0.094 0.906 18 H 0.060 0.940 19 H 0.064 0.936 20 H 0.100 0.900 21 H 0.117 0.883 22 H 0.111 0.889 23 H 0.113 0.887 24 H 0.037 0.963 25 H 0.047 0.953 26 H 0.204 0.796 27 H 0.060 0.940 Dipole moment (debyes) X Y Z Total from point charges 5.010 10.710 -2.710 12.131 hybrid contribution -0.898 -0.608 0.747 1.317 sum 4.112 10.102 -1.963 11.082 Atomic orbital electron populations 1.22769 0.89845 1.00585 1.02054 1.68573 1.09290 1.19801 1.24799 1.23980 0.97285 0.90371 1.00768 1.23285 0.97554 0.96036 0.99284 1.23691 0.97933 0.95867 0.91334 0.91090 1.20711 0.90860 0.87217 0.97042 1.42529 1.04838 1.04242 1.86999 1.19666 0.92855 0.85771 1.39809 0.90703 1.25614 0.95157 1.02597 1.03609 1.69821 0.99204 1.34458 1.58812 0.85139 0.76440 0.79487 0.78257 1.20121 1.21976 1.20481 0.90630 0.94039 0.93571 0.90023 0.88305 0.88860 0.88745 0.96278 0.95315 0.79627 0.93996 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.00 -0.11 9.67 127.69 1.24 1.12 15 2 N -0.50 -16.94 6.38 -906.53 -5.78 -22.72 15 3 C 0.00 0.10 7.96 86.41 0.69 0.79 15 4 C -0.12 -3.03 7.85 31.23 0.25 -2.79 15 5 C 0.02 0.73 3.36 44.95 0.15 0.89 15 6 H 0.07 2.50 7.93 -2.39 -0.02 2.48 15 7 C 0.17 7.29 6.30 86.38 0.54 7.83 15 8 N -0.74 -40.47 5.60 -343.45 -1.92 -42.39 15 9 C -0.25 -14.69 9.99 84.03 0.84 -13.85 15 10 H 0.08 4.22 7.83 -2.91 -0.02 4.20 15 11 C -0.08 -4.65 5.50 84.86 0.47 -4.19 15 12 N -0.97 -61.58 13.06 21.65 0.28 -61.30 15 13 Si 0.98 47.56 29.55 68.60 2.03 49.59 15 14 H -0.28 -12.77 7.11 99.48 0.71 -12.06 15 15 H -0.29 -14.25 7.11 99.48 0.71 -13.55 15 16 H -0.28 -13.09 7.11 99.48 0.71 -12.38 15 17 H 0.07 2.25 8.14 -2.39 -0.02 2.23 15 18 H 0.04 1.68 7.31 -2.39 -0.02 1.67 15 19 H 0.05 1.31 7.60 -2.39 -0.02 1.29 15 20 H 0.08 1.66 7.60 -2.39 -0.02 1.65 15 21 H 0.10 2.06 8.14 -2.38 -0.02 2.04 15 22 H 0.09 2.25 8.10 -2.39 -0.02 2.23 15 23 H 0.09 1.84 8.14 -2.38 -0.02 1.82 15 24 H 0.02 0.87 8.14 -2.38 -0.02 0.85 15 25 H 0.03 1.21 8.14 -2.38 -0.02 1.19 15 26 H 0.37 21.39 6.84 -92.71 -0.63 20.75 15 27 H 0.25 15.37 8.31 -92.71 -0.77 14.60 15 Total: -1.00 -67.30 228.77 -0.72 -68.02 By element: Atomic # 1 Polarization: 18.49 SS G_CDS: 0.50 Total: 18.99 kcal Atomic # 6 Polarization: -14.37 SS G_CDS: 4.17 Total: -10.20 kcal Atomic # 7 Polarization: -118.98 SS G_CDS: -7.42 Total: -126.41 kcal Atomic # 14 Polarization: 47.56 SS G_CDS: 2.03 Total: 49.59 kcal Total: -67.30 -0.72 -68.02 kcal The number of atoms in the molecule is 27 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000642874814.mol2 27 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 88.044 kcal (2) G-P(sol) polarization free energy of solvation -67.302 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 20.743 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.721 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.022 kcal (6) G-S(sol) free energy of system = (1) + (5) 20.022 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.13 seconds