Wall clock time and date at job start Mon Mar 30 2020 01:47:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46900 * 1 3 3 C 1.48181 * 111.07734 * 2 1 4 4 C 1.53940 * 86.22502 * 222.53398 * 3 2 1 5 5 C 1.47958 * 111.00277 * 260.70344 * 2 1 3 6 6 H 1.08998 * 113.75604 * 23.16466 * 5 2 1 7 7 C 1.52998 * 113.76350 * 251.90695 * 5 2 1 8 8 N 1.46492 * 109.47482 * 76.31034 * 7 5 2 9 9 C 1.36935 * 120.00376 * 180.02562 * 8 7 5 10 10 H 1.08003 * 119.99724 * 0.02562 * 9 8 7 11 11 C 1.38810 * 120.00063 * 180.02562 * 9 8 7 12 12 N 1.31622 * 119.99887 * 180.02562 * 11 9 8 13 13 Si 1.86798 * 120.00212 * 359.97438 * 11 9 8 14 14 H 1.48506 * 109.47297 * 89.99941 * 13 11 9 15 15 H 1.48503 * 109.47261 * 330.00122 * 13 11 9 16 16 H 1.48500 * 109.47454 * 210.00115 * 13 11 9 17 17 H 1.08995 * 109.47727 * 159.28818 * 1 2 3 18 18 H 1.08992 * 109.47297 * 279.29607 * 1 2 3 19 19 H 1.09007 * 109.46748 * 39.29431 * 1 2 3 20 20 H 1.09001 * 113.82652 * 108.19177 * 3 2 1 21 21 H 1.08996 * 113.75869 * 336.87008 * 3 2 1 22 22 H 1.09000 * 113.73222 * 269.27398 * 4 3 2 23 23 H 1.08999 * 113.73628 * 137.98405 * 4 3 2 24 24 H 1.08999 * 109.46602 * 316.31154 * 7 5 2 25 25 H 1.08998 * 109.47239 * 196.31804 * 7 5 2 26 26 H 0.97009 * 119.99477 * 0.02562 * 8 7 5 27 27 H 0.97006 * 119.99732 * 180.02562 * 12 11 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 2.0019 1.3827 0.0000 4 6 3.0216 0.8810 -1.0384 5 6 1.9993 -0.2231 -1.3631 6 1 1.3004 0.0448 -2.1555 7 6 2.6262 -1.6045 -1.5623 8 7 1.5666 -2.6066 -1.6994 9 6 1.8900 -3.9239 -1.8875 10 1 2.9264 -4.2240 -1.9343 11 6 0.8858 -4.8733 -2.0179 12 7 1.1967 -6.1395 -2.1982 13 14 -0.9067 -4.3543 -1.9363 14 1 -1.3879 -4.0197 -3.3008 15 1 -1.0377 -3.1630 -1.0594 16 1 -1.7198 -5.4673 -1.3837 17 1 -0.3634 -0.9612 -0.3634 18 1 -0.3633 0.1660 1.0141 19 1 -0.3633 0.7954 -0.6509 20 1 2.4507 1.6816 0.9473 21 1 1.3038 2.1223 -0.3919 22 1 3.9467 0.5071 -0.5997 23 1 3.1905 1.5777 -1.8595 24 1 3.2481 -1.8488 -0.7011 25 1 3.2396 -1.5986 -2.4633 26 1 0.6357 -2.3370 -1.6570 27 1 0.4950 -6.8030 -2.2897 RHF calculation, no. of doubly occupied orbitals= 32 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000642874815.mol2 27 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:47:30 Heat of formation + Delta-G solvation = 48.385184 kcal Electronic energy + Delta-G solvation = -9977.779023 eV Core-core repulsion = 8158.177093 eV Total energy + Delta-G solvation = -1819.601930 eV No. of doubly occupied orbitals = 32 Molecular weight (most abundant/longest-lived isotopes) = 170.111 amu Computer time = 0.12 seconds Orbital eigenvalues (eV) -39.65417 -34.47136 -31.36346 -30.35548 -27.58485 -23.89815 -23.58002 -21.42991 -19.44990 -17.53200 -15.83677 -14.93828 -14.79896 -14.32717 -13.55201 -12.94093 -12.67805 -12.60111 -11.72730 -11.68571 -11.24359 -11.05743 -10.78829 -10.52255 -10.17673 -10.05838 -9.52873 -8.84306 -8.54005 -7.14601 -5.71032 -3.04930 3.39927 3.41695 3.47534 4.10664 4.63861 4.67726 4.92723 5.27899 5.41360 5.50113 5.57876 5.64602 5.74252 5.84796 5.86452 5.94453 6.14932 6.30175 6.43755 6.73497 6.85963 7.34280 8.06101 8.48411 9.27876 10.00622 10.21360 11.47810 Molecular weight = 170.11amu Principal moments of inertia in cm(-1) A = 0.067587 B = 0.013809 C = 0.011952 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 414.182075 B = 2027.184082 C = 2342.188373 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.011 4.011 2 N -0.472 5.472 3 C -0.004 4.004 4 C -0.138 4.138 5 C 0.022 3.978 6 H 0.075 0.925 7 C 0.175 3.825 8 N -0.754 5.754 9 C -0.239 4.239 10 H 0.090 0.910 11 C 0.002 3.998 12 N -0.936 5.936 13 Si 0.884 3.116 14 H -0.285 1.285 15 H -0.278 1.278 16 H -0.291 1.291 17 H 0.072 0.928 18 H 0.066 0.934 19 H 0.028 0.972 20 H 0.085 0.915 21 H 0.063 0.937 22 H 0.092 0.908 23 H 0.069 0.931 24 H 0.037 0.963 25 H 0.032 0.968 26 H 0.358 0.642 27 H 0.258 0.742 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.251 15.048 2.481 15.253 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.160 4.160 2 N -0.195 5.195 3 C -0.133 4.133 4 C -0.176 4.176 5 C -0.088 4.088 6 H 0.093 0.907 7 C 0.048 3.952 8 N -0.399 5.399 9 C -0.369 4.369 10 H 0.108 0.892 11 C -0.194 4.194 12 N -0.585 5.585 13 Si 0.715 3.285 14 H -0.212 1.212 15 H -0.204 1.204 16 H -0.217 1.217 17 H 0.091 0.909 18 H 0.084 0.916 19 H 0.047 0.953 20 H 0.103 0.897 21 H 0.081 0.919 22 H 0.111 0.889 23 H 0.087 0.913 24 H 0.054 0.946 25 H 0.050 0.950 26 H 0.191 0.809 27 H 0.068 0.932 Dipole moment (debyes) X Y Z Total from point charges 0.030 14.376 2.990 14.683 hybrid contribution -1.826 0.743 -0.551 2.047 sum -1.796 15.119 2.440 15.419 Atomic orbital electron populations 1.22884 0.90082 1.01649 1.01391 1.68577 1.08763 1.16997 1.25120 1.23942 0.97522 0.91838 1.00033 1.23324 0.98443 0.97378 0.98489 1.23777 0.96618 0.97385 0.90974 0.90739 1.20542 0.91279 0.85036 0.98378 1.42653 1.03202 1.04776 1.89278 1.19101 0.94864 0.81933 1.40962 0.89171 1.24658 0.97287 0.95196 1.02232 1.69705 1.31737 1.00121 1.56943 0.86557 0.86881 0.77452 0.77651 1.21225 1.20410 1.21705 0.90876 0.91554 0.95318 0.89701 0.91857 0.88908 0.91274 0.94555 0.95032 0.80909 0.93155 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.01 -0.17 9.65 60.06 0.58 0.41 15 2 N -0.47 -7.77 6.37 -237.96 -1.52 -9.28 15 3 C 0.00 -0.06 7.98 -2.64 -0.02 -0.08 15 4 C -0.14 -1.77 7.86 -25.78 -0.20 -1.97 15 5 C 0.02 0.36 3.34 -66.65 -0.22 0.14 15 6 H 0.07 1.21 7.92 -51.93 -0.41 0.80 15 7 C 0.18 3.61 6.29 -4.05 -0.03 3.59 15 8 N -0.75 -18.95 5.41 -59.92 -0.32 -19.28 15 9 C -0.24 -7.05 10.47 -15.06 -0.16 -7.21 15 10 H 0.09 2.83 8.06 -52.48 -0.42 2.41 15 11 C 0.00 0.05 5.50 -17.43 -0.10 -0.05 15 12 N -0.94 -30.24 13.97 55.49 0.78 -29.47 15 13 Si 0.88 22.83 27.73 -169.99 -4.71 18.11 15 14 H -0.29 -7.27 7.11 56.52 0.40 -6.86 15 15 H -0.28 -6.77 6.52 56.52 0.37 -6.40 15 16 H -0.29 -7.56 7.11 56.52 0.40 -7.16 15 17 H 0.07 1.32 7.15 -51.93 -0.37 0.95 15 18 H 0.07 0.93 8.14 -51.93 -0.42 0.51 15 19 H 0.03 0.38 7.63 -51.92 -0.40 -0.01 15 20 H 0.08 0.97 8.14 -51.93 -0.42 0.55 15 21 H 0.06 0.70 7.62 -51.93 -0.40 0.31 15 22 H 0.09 1.18 8.10 -51.93 -0.42 0.76 15 23 H 0.07 0.75 8.14 -51.93 -0.42 0.32 15 24 H 0.04 0.79 8.14 -51.93 -0.42 0.36 15 25 H 0.03 0.64 8.14 -51.93 -0.42 0.22 15 26 H 0.36 8.79 4.54 -40.82 -0.19 8.61 15 27 H 0.26 7.92 8.31 -40.82 -0.34 7.58 15 LS Contribution 225.34 15.07 3.40 3.40 Total: -1.00 -32.34 225.34 -6.41 -38.75 By element: Atomic # 1 Polarization: 6.82 SS G_CDS: -3.88 Total: 2.94 kcal Atomic # 6 Polarization: -5.03 SS G_CDS: -0.15 Total: -5.17 kcal Atomic # 7 Polarization: -56.96 SS G_CDS: -1.06 Total: -58.03 kcal Atomic # 14 Polarization: 22.83 SS G_CDS: -4.71 Total: 18.11 kcal Total LS contribution 3.40 Total: 3.40 kcal Total: -32.34 -6.41 -38.75 kcal The number of atoms in the molecule is 27 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000642874815.mol2 27 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 87.140 kcal (2) G-P(sol) polarization free energy of solvation -32.341 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 54.799 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.413 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.755 kcal (6) G-S(sol) free energy of system = (1) + (5) 48.385 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.12 seconds