Wall clock time and date at job start Mon Mar 30 2020 01:47:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46900 * 1 3 3 C 1.48181 * 111.07734 * 2 1 4 4 C 1.53940 * 86.22502 * 222.53398 * 3 2 1 5 5 C 1.47958 * 111.00277 * 260.70344 * 2 1 3 6 6 H 1.08998 * 113.75604 * 23.16466 * 5 2 1 7 7 C 1.52998 * 113.76350 * 251.90695 * 5 2 1 8 8 N 1.46492 * 109.47482 * 76.31034 * 7 5 2 9 9 C 1.36935 * 120.00376 * 180.02562 * 8 7 5 10 10 H 1.08003 * 119.99724 * 0.02562 * 9 8 7 11 11 C 1.38810 * 120.00063 * 180.02562 * 9 8 7 12 12 N 1.31622 * 119.99887 * 180.02562 * 11 9 8 13 13 Si 1.86798 * 120.00212 * 359.97438 * 11 9 8 14 14 H 1.48506 * 109.47297 * 89.99941 * 13 11 9 15 15 H 1.48503 * 109.47261 * 330.00122 * 13 11 9 16 16 H 1.48500 * 109.47454 * 210.00115 * 13 11 9 17 17 H 1.08995 * 109.47727 * 159.28818 * 1 2 3 18 18 H 1.08992 * 109.47297 * 279.29607 * 1 2 3 19 19 H 1.09007 * 109.46748 * 39.29431 * 1 2 3 20 20 H 1.09001 * 113.82652 * 108.19177 * 3 2 1 21 21 H 1.08996 * 113.75869 * 336.87008 * 3 2 1 22 22 H 1.09000 * 113.73222 * 269.27398 * 4 3 2 23 23 H 1.08999 * 113.73628 * 137.98405 * 4 3 2 24 24 H 1.08999 * 109.46602 * 316.31154 * 7 5 2 25 25 H 1.08998 * 109.47239 * 196.31804 * 7 5 2 26 26 H 0.97009 * 119.99477 * 0.02562 * 8 7 5 27 27 H 0.97006 * 119.99732 * 180.02562 * 12 11 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 2.0019 1.3827 0.0000 4 6 3.0216 0.8810 -1.0384 5 6 1.9993 -0.2231 -1.3631 6 1 1.3004 0.0448 -2.1555 7 6 2.6262 -1.6045 -1.5623 8 7 1.5666 -2.6066 -1.6994 9 6 1.8900 -3.9239 -1.8875 10 1 2.9264 -4.2240 -1.9343 11 6 0.8858 -4.8733 -2.0179 12 7 1.1967 -6.1395 -2.1982 13 14 -0.9067 -4.3543 -1.9363 14 1 -1.3879 -4.0197 -3.3008 15 1 -1.0377 -3.1630 -1.0594 16 1 -1.7198 -5.4673 -1.3837 17 1 -0.3634 -0.9612 -0.3634 18 1 -0.3633 0.1660 1.0141 19 1 -0.3633 0.7954 -0.6509 20 1 2.4507 1.6816 0.9473 21 1 1.3038 2.1223 -0.3919 22 1 3.9467 0.5071 -0.5997 23 1 3.1905 1.5777 -1.8595 24 1 3.2481 -1.8488 -0.7011 25 1 3.2396 -1.5986 -2.4633 26 1 0.6357 -2.3370 -1.6570 27 1 0.4950 -6.8030 -2.2897 RHF calculation, no. of doubly occupied orbitals= 32 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000642874815.mol2 27 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:47:30 Heat of formation + Delta-G solvation = 22.821608 kcal Electronic energy + Delta-G solvation = -9978.887542 eV Core-core repulsion = 8158.177093 eV Total energy + Delta-G solvation = -1820.710449 eV No. of doubly occupied orbitals = 32 Molecular weight (most abundant/longest-lived isotopes) = 170.111 amu Computer time = 0.13 seconds Orbital eigenvalues (eV) -40.82699 -36.47965 -33.51253 -31.57795 -29.23220 -25.31790 -25.02556 -23.22727 -20.75446 -19.56357 -17.05781 -16.62050 -16.32378 -15.94378 -15.19998 -14.66003 -14.20826 -14.02941 -13.65913 -13.19048 -12.79940 -12.37008 -12.24530 -12.15497 -11.82102 -11.59958 -11.47790 -11.01563 -9.68844 -9.30368 -8.04965 -5.37577 1.32475 1.37151 1.44524 2.45615 2.95846 3.26817 3.50563 3.72846 4.03620 4.23121 4.32843 4.43492 4.48589 4.58642 4.82154 4.86300 4.94980 5.04558 5.06747 5.30986 5.53136 5.72929 6.17029 6.20172 7.05602 7.82526 8.02111 9.16901 Molecular weight = 170.11amu Principal moments of inertia in cm(-1) A = 0.067587 B = 0.013809 C = 0.011952 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 414.182075 B = 2027.184082 C = 2342.188373 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.010 4.010 2 N -0.505 5.505 3 C 0.006 3.994 4 C -0.125 4.125 5 C 0.018 3.982 6 H 0.081 0.919 7 C 0.171 3.829 8 N -0.756 5.756 9 C -0.236 4.236 10 H 0.056 0.944 11 C -0.066 4.066 12 N -0.984 5.984 13 Si 0.956 3.044 14 H -0.275 1.275 15 H -0.256 1.256 16 H -0.293 1.293 17 H 0.043 0.957 18 H 0.077 0.923 19 H 0.051 0.949 20 H 0.097 0.903 21 H 0.085 0.915 22 H 0.090 0.910 23 H 0.096 0.904 24 H 0.022 0.978 25 H 0.034 0.966 26 H 0.363 0.637 27 H 0.258 0.742 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.282 17.681 2.729 17.936 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.159 4.159 2 N -0.228 5.228 3 C -0.122 4.122 4 C -0.163 4.163 5 C -0.091 4.091 6 H 0.099 0.901 7 C 0.044 3.956 8 N -0.401 5.401 9 C -0.367 4.367 10 H 0.074 0.926 11 C -0.257 4.257 12 N -0.635 5.635 13 Si 0.783 3.217 14 H -0.201 1.201 15 H -0.181 1.181 16 H -0.219 1.219 17 H 0.061 0.939 18 H 0.095 0.905 19 H 0.069 0.931 20 H 0.115 0.885 21 H 0.103 0.897 22 H 0.109 0.891 23 H 0.114 0.886 24 H 0.040 0.960 25 H 0.052 0.948 26 H 0.196 0.804 27 H 0.067 0.933 Dipole moment (debyes) X Y Z Total from point charges -0.982 17.066 3.248 17.400 hybrid contribution -1.388 -0.074 -0.609 1.517 sum -2.370 16.992 2.639 17.358 Atomic orbital electron populations 1.22867 0.89806 1.00756 1.02477 1.68543 1.09386 1.20068 1.24779 1.24008 0.97251 0.90251 1.00713 1.23288 0.97568 0.96055 0.99385 1.23703 0.98287 0.95514 0.91621 0.90080 1.20707 0.90517 0.86646 0.97698 1.42676 1.04554 1.03870 1.89035 1.19101 0.93485 0.84191 1.39948 0.92602 1.25522 1.02507 0.95104 1.02546 1.69891 1.33360 1.01563 1.58679 0.85402 0.80236 0.77642 0.78404 1.20068 1.18069 1.21917 0.93851 0.90457 0.93078 0.88462 0.89682 0.89111 0.88579 0.96003 0.94804 0.80351 0.93277 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.01 -0.28 9.65 127.69 1.23 0.95 15 2 N -0.50 -15.28 6.37 -906.76 -5.77 -21.05 15 3 C 0.01 0.12 7.98 86.36 0.69 0.81 15 4 C -0.12 -2.77 7.86 31.24 0.25 -2.52 15 5 C 0.02 0.56 3.34 45.02 0.15 0.71 15 6 H 0.08 2.39 7.92 -2.39 -0.02 2.37 15 7 C 0.17 6.96 6.29 86.38 0.54 7.50 15 8 N -0.76 -37.77 5.41 -343.48 -1.86 -39.63 15 9 C -0.24 -14.24 10.47 84.03 0.88 -13.36 15 10 H 0.06 3.66 8.06 -2.91 -0.02 3.64 15 11 C -0.07 -4.02 5.50 84.86 0.47 -3.56 15 12 N -0.98 -65.06 13.97 21.65 0.30 -64.76 15 13 Si 0.96 47.17 27.73 68.60 1.90 49.07 15 14 H -0.27 -13.03 7.11 99.48 0.71 -12.32 15 15 H -0.26 -11.57 6.52 99.48 0.65 -10.92 15 16 H -0.29 -14.47 7.11 99.48 0.71 -13.76 15 17 H 0.04 1.46 7.15 -2.39 -0.02 1.45 15 18 H 0.08 1.96 8.14 -2.39 -0.02 1.94 15 19 H 0.05 1.18 7.63 -2.38 -0.02 1.17 15 20 H 0.10 1.83 8.14 -2.39 -0.02 1.81 15 21 H 0.09 1.46 7.62 -2.39 -0.02 1.44 15 22 H 0.09 2.06 8.10 -2.39 -0.02 2.04 15 23 H 0.10 1.65 8.14 -2.39 -0.02 1.63 15 24 H 0.02 0.95 8.14 -2.39 -0.02 0.93 15 25 H 0.03 1.36 8.14 -2.39 -0.02 1.34 15 26 H 0.36 17.34 4.54 -92.70 -0.42 16.92 15 27 H 0.26 16.18 8.31 -92.70 -0.77 15.41 15 Total: -1.00 -70.18 225.34 -0.56 -70.74 By element: Atomic # 1 Polarization: 14.43 SS G_CDS: 0.66 Total: 15.09 kcal Atomic # 6 Polarization: -13.67 SS G_CDS: 4.21 Total: -9.47 kcal Atomic # 7 Polarization: -118.11 SS G_CDS: -7.33 Total: -125.44 kcal Atomic # 14 Polarization: 47.17 SS G_CDS: 1.90 Total: 49.07 kcal Total: -70.18 -0.56 -70.74 kcal The number of atoms in the molecule is 27 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000642874815.mol2 27 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 93.563 kcal (2) G-P(sol) polarization free energy of solvation -70.182 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 23.380 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.559 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.741 kcal (6) G-S(sol) free energy of system = (1) + (5) 22.822 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.13 seconds