Wall clock time and date at job start Mon Mar 30 2020 01:41:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31515 * 1 3 3 Si 1.86799 * 119.99599 * 2 1 4 4 H 1.48506 * 109.47053 * 180.02562 * 3 2 1 5 5 H 1.48497 * 109.47689 * 300.00189 * 3 2 1 6 6 H 1.48507 * 109.47116 * 60.00322 * 3 2 1 7 7 C 1.37871 * 120.00364 * 180.02562 * 2 1 3 8 8 H 1.08001 * 120.00246 * 179.97438 * 7 2 1 9 9 C 1.50707 * 119.99857 * 0.02562 * 7 2 1 10 10 C 1.53000 * 109.46924 * 179.97438 * 9 7 2 11 11 N 1.46900 * 109.46641 * 179.97438 * 10 9 7 12 12 N 1.45408 * 110.99564 * 180.02562 * 11 10 9 13 13 C 1.47955 * 111.00150 * 120.00549 * 12 11 10 14 14 C 1.53937 * 86.18157 * 137.57830 * 13 12 11 15 15 C 1.47967 * 110.99658 * 219.36478 * 12 11 10 16 16 H 0.97003 * 120.00440 * 359.97438 * 1 2 3 17 17 H 1.09000 * 109.47020 * 59.99703 * 9 7 2 18 18 H 1.09000 * 109.46745 * 299.99819 * 9 7 2 19 19 H 1.09005 * 109.46743 * 60.00155 * 10 9 7 20 20 H 1.08994 * 109.47301 * 300.00077 * 10 9 7 21 21 H 1.00900 * 111.00564 * 303.95263 * 11 10 9 22 22 H 1.09005 * 113.75866 * 23.26226 * 13 12 11 23 23 H 1.08996 * 113.75657 * 251.90281 * 13 12 11 24 24 H 1.08998 * 113.72858 * 90.64100 * 14 13 12 25 25 H 1.09004 * 113.73337 * 221.91809 * 14 13 12 26 26 H 1.08994 * 113.76237 * 108.09835 * 15 12 11 27 27 H 1.09000 * 113.76000 * 336.73232 * 15 12 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2490 1.6178 0.0000 4 1 3.7091 1.3465 -0.0006 5 1 1.8903 2.3966 -1.2124 6 1 1.8903 2.3965 1.2126 7 6 2.0046 -1.1940 -0.0005 8 1 3.0846 -1.1939 -0.0010 9 6 1.2511 -2.4991 -0.0017 10 6 2.2454 -3.6620 -0.0027 11 7 1.5109 -4.9342 -0.0033 12 7 2.4261 -6.0641 -0.0036 13 6 2.2230 -6.9114 1.1922 14 6 2.3639 -8.1118 0.2388 15 6 1.9298 -7.1480 -0.8803 16 1 -0.4851 0.8400 0.0004 17 1 0.6248 -2.5563 -0.8919 18 1 0.6241 -2.5575 0.8880 19 1 2.8720 -3.6050 0.8874 20 1 2.8721 -3.6034 -0.8926 21 1 0.8747 -4.9848 0.7783 22 1 1.2313 -6.8161 1.6346 23 1 3.0260 -6.8360 1.9252 24 1 3.3875 -8.4718 0.1352 25 1 1.6485 -8.9113 0.4313 26 1 2.4987 -7.2617 -1.8030 27 1 0.8525 -7.1219 -1.0440 RHF calculation, no. of doubly occupied orbitals= 32 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000686777553.mol2 27 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:41:24 Heat of formation + Delta-G solvation = 49.854157 kcal Electronic energy + Delta-G solvation = -9571.845742 eV Core-core repulsion = 7752.307512 eV Total energy + Delta-G solvation = -1819.538230 eV No. of doubly occupied orbitals = 32 Molecular weight (most abundant/longest-lived isotopes) = 170.111 amu Computer time = 0.11 seconds Orbital eigenvalues (eV) -39.15913 -34.46674 -32.41388 -29.17758 -25.94643 -25.69122 -23.25778 -20.49336 -19.69555 -16.67701 -15.95027 -15.64843 -14.55684 -14.42338 -13.44016 -12.91167 -12.52100 -12.35625 -11.81153 -11.16643 -11.07516 -10.91264 -10.82924 -10.47351 -10.09409 -9.37915 -9.12929 -9.00074 -8.34775 -7.87587 -5.98671 -4.00923 3.32971 3.40063 3.44892 3.87858 4.47617 4.56530 4.66474 5.12916 5.37526 5.47267 5.61124 5.72929 5.75188 6.01459 6.17587 6.29796 6.51293 6.67646 7.03182 7.38252 7.69850 7.87040 8.06224 8.07992 8.45138 9.06230 9.62848 11.13005 Molecular weight = 170.11amu Principal moments of inertia in cm(-1) A = 0.128469 B = 0.008231 C = 0.008055 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 217.899867 B = 3401.149787 C = 3475.064534 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.895 5.895 2 C 0.057 3.943 3 Si 0.894 3.106 4 H -0.272 1.272 5 H -0.284 1.284 6 H -0.284 1.284 7 C -0.518 4.518 8 H 0.056 0.944 9 C 0.025 3.975 10 C 0.077 3.923 11 N -0.553 5.553 12 N -0.323 5.323 13 C -0.029 4.029 14 C -0.150 4.150 15 C 0.015 3.985 16 H 0.260 0.740 17 H 0.025 0.975 18 H 0.013 0.987 19 H 0.019 0.981 20 H 0.064 0.936 21 H 0.325 0.675 22 H 0.074 0.926 23 H 0.085 0.915 24 H 0.087 0.913 25 H 0.071 0.929 26 H 0.085 0.915 27 H 0.078 0.922 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.897 -12.264 1.264 12.665 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.534 5.534 2 C -0.144 4.144 3 Si 0.722 3.278 4 H -0.197 1.197 5 H -0.210 1.210 6 H -0.210 1.210 7 C -0.557 4.557 8 H 0.075 0.925 9 C -0.014 4.014 10 C -0.052 4.052 11 N -0.276 5.276 12 N -0.136 5.136 13 C -0.160 4.160 14 C -0.189 4.189 15 C -0.115 4.115 16 H 0.070 0.930 17 H 0.043 0.957 18 H 0.031 0.969 19 H 0.037 0.963 20 H 0.082 0.918 21 H 0.143 0.857 22 H 0.092 0.908 23 H 0.103 0.897 24 H 0.106 0.894 25 H 0.090 0.910 26 H 0.103 0.897 27 H 0.097 0.903 Dipole moment (debyes) X Y Z Total from point charges 3.307 -11.822 0.444 12.283 hybrid contribution -0.129 0.737 1.159 1.379 sum 3.178 -11.084 1.603 11.642 Atomic orbital electron populations 1.69985 1.06060 1.26498 1.50870 1.25006 0.94853 0.99267 0.95292 0.86504 0.80121 0.83639 0.77548 1.19697 1.20965 1.21047 1.21193 0.93118 0.90778 1.50607 0.92536 1.19102 0.94105 0.90553 0.97631 1.22114 0.97090 0.86525 0.99427 1.64311 1.15008 1.00637 1.47660 1.71638 1.37224 1.01218 1.03520 1.24406 1.01469 0.94246 0.95834 1.23295 1.02372 0.96633 0.96601 1.23892 1.00425 0.89818 0.97352 0.93049 0.95653 0.96913 0.96260 0.91777 0.85739 0.90753 0.89676 0.89413 0.91038 0.89703 0.90333 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -27.34 13.29 55.43 0.74 -26.61 15 2 C 0.06 1.67 5.46 -17.82 -0.10 1.57 15 3 Si 0.89 22.02 29.54 -169.99 -5.02 16.99 15 4 H -0.27 -6.57 7.11 56.52 0.40 -6.17 15 5 H -0.28 -6.89 7.11 56.52 0.40 -6.49 15 6 H -0.28 -6.90 7.11 56.52 0.40 -6.49 15 7 C -0.52 -15.10 9.11 -34.44 -0.31 -15.41 15 8 H 0.06 1.61 7.74 -52.49 -0.41 1.20 15 9 C 0.02 0.66 5.23 -27.88 -0.15 0.52 15 10 C 0.08 1.76 6.07 -3.82 -0.02 1.73 15 11 N -0.55 -10.84 6.75 -10.37 -0.07 -10.91 15 12 N -0.32 -5.44 6.45 -117.32 -0.76 -6.19 15 13 C -0.03 -0.39 8.12 -2.77 -0.02 -0.41 15 14 C -0.15 -1.65 8.28 -25.80 -0.21 -1.87 15 15 C 0.01 0.20 8.29 -2.76 -0.02 0.18 15 16 H 0.26 7.44 8.31 -40.82 -0.34 7.10 15 17 H 0.03 0.73 8.14 -51.93 -0.42 0.31 15 18 H 0.01 0.35 8.14 -51.93 -0.42 -0.07 15 19 H 0.02 0.44 8.14 -51.93 -0.42 0.02 15 20 H 0.06 1.51 8.14 -51.93 -0.42 1.09 15 21 H 0.32 5.99 7.77 -174.65 -1.36 4.63 15 22 H 0.07 0.93 7.55 -51.93 -0.39 0.54 15 23 H 0.08 1.08 8.14 -51.93 -0.42 0.65 15 24 H 0.09 0.90 8.14 -51.93 -0.42 0.47 15 25 H 0.07 0.65 8.14 -51.93 -0.42 0.23 15 26 H 0.08 1.10 8.14 -51.93 -0.42 0.68 15 27 H 0.08 1.07 8.10 -51.93 -0.42 0.65 15 LS Contribution 232.52 15.07 3.50 3.50 Total: -1.00 -31.02 232.52 -7.54 -38.56 By element: Atomic # 1 Polarization: 3.43 SS G_CDS: -5.09 Total: -1.66 kcal Atomic # 6 Polarization: -12.85 SS G_CDS: -0.84 Total: -13.69 kcal Atomic # 7 Polarization: -43.62 SS G_CDS: -0.09 Total: -43.71 kcal Atomic # 14 Polarization: 22.02 SS G_CDS: -5.02 Total: 16.99 kcal Total LS contribution 3.50 Total: 3.50 kcal Total: -31.02 -7.54 -38.56 kcal The number of atoms in the molecule is 27 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000686777553.mol2 27 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 88.410 kcal (2) G-P(sol) polarization free energy of solvation -31.016 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 57.394 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.540 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.556 kcal (6) G-S(sol) free energy of system = (1) + (5) 49.854 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.11 seconds