Wall clock time and date at job start Mon Mar 30 2020 01:41:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31515 * 1 3 3 Si 1.86799 * 119.99599 * 2 1 4 4 H 1.48506 * 109.47053 * 180.02562 * 3 2 1 5 5 H 1.48497 * 109.47689 * 300.00189 * 3 2 1 6 6 H 1.48507 * 109.47116 * 60.00322 * 3 2 1 7 7 C 1.37871 * 120.00364 * 180.02562 * 2 1 3 8 8 H 1.08001 * 120.00246 * 179.97438 * 7 2 1 9 9 C 1.50707 * 119.99857 * 0.02562 * 7 2 1 10 10 C 1.53000 * 109.46924 * 179.97438 * 9 7 2 11 11 N 1.46900 * 109.46641 * 179.97438 * 10 9 7 12 12 N 1.45408 * 110.99564 * 180.02562 * 11 10 9 13 13 C 1.47955 * 111.00150 * 120.00549 * 12 11 10 14 14 C 1.53937 * 86.18157 * 137.57830 * 13 12 11 15 15 C 1.47967 * 110.99658 * 219.36478 * 12 11 10 16 16 H 0.97003 * 120.00440 * 359.97438 * 1 2 3 17 17 H 1.09000 * 109.47020 * 59.99703 * 9 7 2 18 18 H 1.09000 * 109.46745 * 299.99819 * 9 7 2 19 19 H 1.09005 * 109.46743 * 60.00155 * 10 9 7 20 20 H 1.08994 * 109.47301 * 300.00077 * 10 9 7 21 21 H 1.00900 * 111.00564 * 303.95263 * 11 10 9 22 22 H 1.09005 * 113.75866 * 23.26226 * 13 12 11 23 23 H 1.08996 * 113.75657 * 251.90281 * 13 12 11 24 24 H 1.08998 * 113.72858 * 90.64100 * 14 13 12 25 25 H 1.09004 * 113.73337 * 221.91809 * 14 13 12 26 26 H 1.08994 * 113.76237 * 108.09835 * 15 12 11 27 27 H 1.09000 * 113.76000 * 336.73232 * 15 12 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2490 1.6178 0.0000 4 1 3.7091 1.3465 -0.0006 5 1 1.8903 2.3966 -1.2124 6 1 1.8903 2.3965 1.2126 7 6 2.0046 -1.1940 -0.0005 8 1 3.0846 -1.1939 -0.0010 9 6 1.2511 -2.4991 -0.0017 10 6 2.2454 -3.6620 -0.0027 11 7 1.5109 -4.9342 -0.0033 12 7 2.4261 -6.0641 -0.0036 13 6 2.2230 -6.9114 1.1922 14 6 2.3639 -8.1118 0.2388 15 6 1.9298 -7.1480 -0.8803 16 1 -0.4851 0.8400 0.0004 17 1 0.6248 -2.5563 -0.8919 18 1 0.6241 -2.5575 0.8880 19 1 2.8720 -3.6050 0.8874 20 1 2.8721 -3.6034 -0.8926 21 1 0.8747 -4.9848 0.7783 22 1 1.2313 -6.8161 1.6346 23 1 3.0260 -6.8360 1.9252 24 1 3.3875 -8.4718 0.1352 25 1 1.6485 -8.9113 0.4313 26 1 2.4987 -7.2617 -1.8030 27 1 0.8525 -7.1219 -1.0440 RHF calculation, no. of doubly occupied orbitals= 32 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000686777553.mol2 27 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:41:24 Heat of formation + Delta-G solvation = 27.742918 kcal Electronic energy + Delta-G solvation = -9572.804557 eV Core-core repulsion = 7752.307512 eV Total energy + Delta-G solvation = -1820.497045 eV No. of doubly occupied orbitals = 32 Molecular weight (most abundant/longest-lived isotopes) = 170.111 amu Computer time = 0.12 seconds Orbital eigenvalues (eV) -40.32715 -36.34610 -34.41568 -31.02298 -27.38665 -26.97220 -25.05684 -22.43770 -20.77256 -18.63179 -17.56064 -16.83752 -16.44888 -16.03545 -14.89768 -14.71950 -14.32028 -13.59458 -13.21763 -13.00910 -12.86095 -12.50203 -12.15883 -12.11372 -11.83226 -11.42620 -11.22713 -10.60015 -10.29359 -9.39027 -8.22500 -6.34264 1.40174 1.41005 1.54748 2.37568 2.61355 3.10987 3.48410 3.58119 4.11476 4.42731 4.46366 4.57815 4.61178 4.75648 4.91699 4.98296 5.07485 5.22417 5.23543 5.44507 5.57126 5.74393 5.98411 6.22973 6.64676 6.81859 7.35151 8.90088 Molecular weight = 170.11amu Principal moments of inertia in cm(-1) A = 0.128469 B = 0.008231 C = 0.008055 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 217.899867 B = 3401.149787 C = 3475.064534 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.932 5.932 2 C 0.002 3.998 3 Si 0.970 3.030 4 H -0.263 1.263 5 H -0.276 1.276 6 H -0.276 1.276 7 C -0.545 4.545 8 H 0.059 0.941 9 C 0.033 3.967 10 C 0.099 3.901 11 N -0.561 5.561 12 N -0.349 5.349 13 C -0.033 4.033 14 C -0.126 4.126 15 C 0.008 3.992 16 H 0.265 0.735 17 H -0.004 1.004 18 H -0.006 1.006 19 H 0.016 0.984 20 H 0.054 0.946 21 H 0.329 0.671 22 H 0.082 0.918 23 H 0.090 0.910 24 H 0.100 0.900 25 H 0.098 0.902 26 H 0.089 0.911 27 H 0.077 0.923 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.834 -12.850 1.535 13.498 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.572 5.572 2 C -0.196 4.196 3 Si 0.794 3.206 4 H -0.187 1.187 5 H -0.202 1.202 6 H -0.201 1.201 7 C -0.583 4.583 8 H 0.077 0.923 9 C -0.005 4.005 10 C -0.031 4.031 11 N -0.283 5.283 12 N -0.163 5.163 13 C -0.163 4.163 14 C -0.165 4.165 15 C -0.122 4.122 16 H 0.074 0.926 17 H 0.015 0.985 18 H 0.012 0.988 19 H 0.035 0.965 20 H 0.073 0.927 21 H 0.147 0.853 22 H 0.100 0.900 23 H 0.109 0.891 24 H 0.118 0.882 25 H 0.116 0.884 26 H 0.107 0.893 27 H 0.096 0.904 Dipole moment (debyes) X Y Z Total from point charges 4.244 -12.429 0.717 13.153 hybrid contribution -0.447 0.825 1.071 1.424 sum 3.796 -11.604 1.787 12.340 Atomic orbital electron populations 1.70108 1.07822 1.27881 1.51339 1.25982 0.95808 1.03409 0.94432 0.85324 0.78949 0.78375 0.77921 1.18679 1.20189 1.20108 1.21587 0.93515 0.92079 1.51131 0.92262 1.18926 0.94234 0.92158 0.95209 1.21640 0.95676 0.87038 0.98698 1.64176 1.15472 1.00542 1.48118 1.71615 1.37070 1.01260 1.06328 1.24542 1.02128 0.94347 0.95303 1.23212 1.03746 0.96012 0.93547 1.24023 1.00512 0.89453 0.98170 0.92612 0.98533 0.98790 0.96547 0.92741 0.85285 0.90032 0.89143 0.88188 0.88353 0.89297 0.90425 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -57.59 13.29 21.45 0.28 -57.30 15 2 C 0.00 0.10 5.46 84.65 0.46 0.56 15 3 Si 0.97 45.02 29.54 68.60 2.03 47.05 15 4 H -0.26 -11.69 7.11 99.48 0.71 -10.98 15 5 H -0.28 -12.44 7.11 99.48 0.71 -11.73 15 6 H -0.28 -12.34 7.11 99.48 0.71 -11.63 15 7 C -0.54 -32.14 9.11 25.60 0.23 -31.91 15 8 H 0.06 3.38 7.74 -2.91 -0.02 3.36 15 9 C 0.03 1.84 5.23 29.85 0.16 2.00 15 10 C 0.10 4.57 6.07 86.30 0.52 5.10 15 11 N -0.56 -21.96 6.75 -186.72 -1.26 -23.22 15 12 N -0.35 -11.34 6.45 -525.10 -3.39 -14.73 15 13 C -0.03 -0.81 8.12 86.41 0.70 -0.11 15 14 C -0.13 -2.38 8.28 31.24 0.26 -2.12 15 15 C 0.01 0.19 8.29 86.40 0.72 0.91 15 16 H 0.27 15.25 8.31 -92.71 -0.77 14.48 15 17 H 0.00 -0.23 8.14 -2.39 -0.02 -0.25 15 18 H -0.01 -0.37 8.14 -2.39 -0.02 -0.38 15 19 H 0.02 0.75 8.14 -2.38 -0.02 0.73 15 20 H 0.05 2.60 8.14 -2.39 -0.02 2.58 15 21 H 0.33 12.16 7.77 -204.84 -1.59 10.57 15 22 H 0.08 1.88 7.55 -2.38 -0.02 1.86 15 23 H 0.09 2.09 8.14 -2.39 -0.02 2.07 15 24 H 0.10 1.68 8.14 -2.39 -0.02 1.66 15 25 H 0.10 1.39 8.14 -2.38 -0.02 1.37 15 26 H 0.09 2.16 8.14 -2.39 -0.02 2.14 15 27 H 0.08 2.00 8.10 -2.39 -0.02 1.98 15 Total: -1.00 -66.21 232.52 0.26 -65.95 By element: Atomic # 1 Polarization: 8.27 SS G_CDS: -0.46 Total: 7.82 kcal Atomic # 6 Polarization: -28.61 SS G_CDS: 3.05 Total: -25.56 kcal Atomic # 7 Polarization: -90.89 SS G_CDS: -4.36 Total: -95.25 kcal Atomic # 14 Polarization: 45.02 SS G_CDS: 2.03 Total: 47.05 kcal Total: -66.21 0.26 -65.95 kcal The number of atoms in the molecule is 27 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000686777553.mol2 27 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 93.691 kcal (2) G-P(sol) polarization free energy of solvation -66.206 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 27.485 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.258 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.948 kcal (6) G-S(sol) free energy of system = (1) + (5) 27.743 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.12 seconds