Wall clock time and date at job start Mon Mar 30 2020 01:46:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.09001 * 109.47426 * 2 1 4 4 C 1.50702 * 109.46696 * 240.00438 * 2 1 3 5 5 H 1.08009 * 119.99917 * 245.53298 * 4 2 1 6 6 C 1.37870 * 120.00299 * 65.53931 * 4 2 1 7 7 N 1.31513 * 120.00194 * 196.73626 * 6 4 2 8 8 Si 1.86805 * 120.00084 * 16.73235 * 6 4 2 9 9 H 1.48504 * 109.47176 * 180.02562 * 8 6 4 10 10 H 1.48498 * 109.46835 * 300.00229 * 8 6 4 11 11 H 1.48495 * 109.47008 * 60.00067 * 8 6 4 12 12 N 1.46896 * 109.47198 * 120.00396 * 2 1 3 13 13 N 1.45402 * 111.00118 * 274.29953 * 12 2 1 14 14 C 1.47474 * 111.00170 * 139.14340 * 13 12 2 15 15 C 1.53510 * 87.93561 * 138.70429 * 14 13 12 16 16 C 1.47482 * 110.99881 * 235.11600 * 13 12 2 17 17 H 1.09003 * 109.47028 * 186.86205 * 1 2 3 18 18 H 1.09005 * 109.47049 * 306.85306 * 1 2 3 19 19 H 1.08999 * 109.47560 * 66.85568 * 1 2 3 20 20 H 0.96997 * 120.00273 * 357.12640 * 7 6 4 21 21 H 1.00899 * 111.00485 * 38.26039 * 12 2 1 22 22 H 1.08992 * 113.47804 * 253.47364 * 14 13 12 23 23 H 1.09005 * 113.47351 * 23.93905 * 14 13 12 24 24 H 1.09000 * 114.17423 * 220.33495 * 15 14 13 25 25 H 1.08994 * 114.34635 * 87.63073 * 15 14 13 26 26 H 1.08997 * 113.47834 * 336.06146 * 16 13 12 27 27 H 1.08998 * 113.47727 * 106.53031 * 16 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0322 -0.7103 -1.2306 5 1 2.5774 -1.6377 -1.1341 6 6 1.7959 -0.1764 -2.4795 7 7 1.9293 -0.9267 -3.5514 8 14 1.2859 1.6126 -2.6493 9 1 1.0936 1.9384 -4.0853 10 1 0.0136 1.8362 -1.9168 11 1 2.3444 2.4851 -2.0806 12 7 2.0197 -0.6926 1.1993 13 7 2.0974 0.2170 2.3311 14 6 1.6294 -0.4365 3.5675 15 6 2.7962 0.2399 4.3007 16 6 3.4526 0.2219 2.9130 17 1 -0.3633 -1.0203 0.1228 18 1 -0.3633 0.6164 0.8224 19 1 -0.3634 0.4039 -0.9449 20 1 2.2343 -1.8435 -3.4668 21 1 1.4429 -1.4915 1.4165 22 1 0.6500 -0.0903 3.8976 23 1 1.7057 -1.5235 3.5397 24 1 3.2897 -0.3955 5.0360 25 1 2.5727 1.2386 4.6757 26 1 4.0154 -0.6893 2.7106 27 1 4.0183 1.1262 2.6885 RHF calculation, no. of doubly occupied orbitals= 32 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000686777687.mol2 27 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:46:16 Heat of formation + Delta-G solvation = 60.534258 kcal Electronic energy + Delta-G solvation = -10017.521263 eV Core-core repulsion = 8198.446156 eV Total energy + Delta-G solvation = -1819.075106 eV No. of doubly occupied orbitals = 32 Molecular weight (most abundant/longest-lived isotopes) = 170.111 amu Computer time = 0.12 seconds Orbital eigenvalues (eV) -39.14468 -34.89601 -31.97407 -28.97196 -25.58339 -25.05614 -24.31160 -19.85192 -19.61410 -17.47709 -16.19888 -15.37733 -14.22470 -13.91590 -13.10684 -12.87446 -12.36599 -12.02249 -11.78423 -11.63467 -11.30932 -10.71672 -10.42066 -10.35424 -9.87468 -9.63510 -9.26060 -8.80546 -8.15508 -7.41622 -6.39975 -3.97977 3.43592 3.49217 3.66093 4.20663 4.54411 4.68175 4.95621 5.29944 5.33393 5.66057 5.77696 5.86356 5.98414 6.24444 6.33156 6.41694 6.48071 6.56667 6.78422 7.04948 7.30032 7.84634 8.20192 8.42083 8.52442 9.03850 9.68945 11.00880 Molecular weight = 170.11amu Principal moments of inertia in cm(-1) A = 0.073968 B = 0.013009 C = 0.012695 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 378.450192 B = 2151.850566 C = 2205.001175 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.177 4.177 2 C 0.196 3.804 3 H 0.036 0.964 4 C -0.585 4.585 5 H 0.060 0.940 6 C 0.029 3.971 7 N -0.910 5.910 8 Si 1.046 2.954 9 H -0.286 1.286 10 H -0.275 1.275 11 H -0.283 1.283 12 N -0.538 5.538 13 N -0.324 5.324 14 C -0.024 4.024 15 C -0.151 4.151 16 C 0.012 3.988 17 H 0.038 0.962 18 H 0.023 0.977 19 H 0.059 0.941 20 H 0.267 0.733 21 H 0.323 0.677 22 H 0.077 0.923 23 H 0.071 0.929 24 H 0.072 0.928 25 H 0.087 0.913 26 H 0.076 0.924 27 H 0.077 0.923 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.554 2.490 12.452 12.710 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.236 4.236 2 C 0.087 3.913 3 H 0.054 0.946 4 C -0.624 4.624 5 H 0.079 0.921 6 C -0.175 4.175 7 N -0.544 5.544 8 Si 0.875 3.125 9 H -0.212 1.212 10 H -0.202 1.202 11 H -0.209 1.209 12 N -0.260 5.260 13 N -0.136 5.136 14 C -0.154 4.154 15 C -0.189 4.189 16 C -0.117 4.117 17 H 0.058 0.942 18 H 0.042 0.958 19 H 0.078 0.922 20 H 0.077 0.923 21 H 0.141 0.859 22 H 0.095 0.905 23 H 0.090 0.910 24 H 0.090 0.910 25 H 0.106 0.894 26 H 0.095 0.905 27 H 0.095 0.905 Dipole moment (debyes) X Y Z Total from point charges -0.644 4.332 10.874 11.723 hybrid contribution -0.215 -1.983 1.535 2.517 sum -0.858 2.349 12.409 12.658 Atomic orbital electron populations 1.22872 1.01013 0.99471 1.00279 1.19501 0.89153 0.95369 0.87275 0.94570 1.21954 1.39699 1.10417 0.90325 0.92150 1.25688 0.94897 1.05040 0.91916 1.70869 1.42938 1.09555 1.31072 0.84036 0.77101 0.75563 0.75787 1.21207 1.20207 1.20949 1.64481 1.56131 1.05596 0.99800 1.71994 1.09989 1.32913 0.98719 1.24079 0.99498 0.98504 0.93329 1.23068 0.97737 1.01344 0.96787 1.23744 0.93744 1.02342 0.91918 0.94246 0.95757 0.92231 0.92341 0.85934 0.90481 0.91047 0.90974 0.89398 0.90534 0.90468 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -4.11 8.98 37.16 0.33 -3.78 15 2 C 0.20 4.96 2.40 -68.87 -0.17 4.79 15 3 H 0.04 0.96 6.73 -51.93 -0.35 0.61 15 4 C -0.58 -17.05 9.11 -34.44 -0.31 -17.37 15 5 H 0.06 1.90 8.06 -52.48 -0.42 1.48 15 6 C 0.03 0.86 5.30 -17.82 -0.09 0.77 15 7 N -0.91 -28.50 13.70 55.43 0.76 -27.74 15 8 Si 1.05 26.06 26.27 -169.99 -4.47 21.60 15 9 H -0.29 -7.10 7.11 56.52 0.40 -6.70 15 10 H -0.28 -6.39 5.72 56.52 0.32 -6.06 15 11 H -0.28 -6.83 7.11 56.52 0.40 -6.42 15 12 N -0.54 -11.92 6.41 -5.66 -0.04 -11.96 15 13 N -0.32 -6.15 6.58 -122.69 -0.81 -6.96 15 14 C -0.02 -0.35 7.72 -7.55 -0.06 -0.41 15 15 C -0.15 -1.90 8.47 -26.20 -0.22 -2.12 15 16 C 0.01 0.20 8.00 -7.54 -0.06 0.14 15 17 H 0.04 0.87 8.00 -51.93 -0.42 0.46 15 18 H 0.02 0.50 8.14 -51.93 -0.42 0.08 15 19 H 0.06 1.43 4.80 -51.93 -0.25 1.18 15 20 H 0.27 8.32 8.72 -40.82 -0.36 7.97 15 21 H 0.32 6.74 7.62 -174.65 -1.33 5.41 15 22 H 0.08 1.06 8.14 -51.93 -0.42 0.64 15 23 H 0.07 1.00 7.78 -51.93 -0.40 0.60 15 24 H 0.07 0.76 8.14 -51.93 -0.42 0.34 15 25 H 0.09 1.03 8.14 -51.93 -0.42 0.61 15 26 H 0.08 1.26 8.10 -51.93 -0.42 0.84 15 27 H 0.08 1.22 8.14 -51.93 -0.42 0.80 15 LS Contribution 223.39 15.07 3.37 3.37 Total: -1.00 -31.14 223.39 -6.70 -37.83 By element: Atomic # 1 Polarization: 6.76 SS G_CDS: -4.94 Total: 1.83 kcal Atomic # 6 Polarization: -17.39 SS G_CDS: -0.58 Total: -17.97 kcal Atomic # 7 Polarization: -46.57 SS G_CDS: -0.08 Total: -46.66 kcal Atomic # 14 Polarization: 26.06 SS G_CDS: -4.47 Total: 21.60 kcal Total LS contribution 3.37 Total: 3.37 kcal Total: -31.14 -6.70 -37.83 kcal The number of atoms in the molecule is 27 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000686777687.mol2 27 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 98.369 kcal (2) G-P(sol) polarization free energy of solvation -31.136 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 67.233 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.699 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.835 kcal (6) G-S(sol) free energy of system = (1) + (5) 60.534 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.12 seconds