Wall clock time and date at job start Mon Mar 30 2020 01:46:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.09001 * 109.47426 * 2 1 4 4 C 1.50702 * 109.46696 * 240.00438 * 2 1 3 5 5 H 1.08009 * 119.99917 * 245.53298 * 4 2 1 6 6 C 1.37870 * 120.00299 * 65.53931 * 4 2 1 7 7 N 1.31513 * 120.00194 * 196.73626 * 6 4 2 8 8 Si 1.86805 * 120.00084 * 16.73235 * 6 4 2 9 9 H 1.48504 * 109.47176 * 180.02562 * 8 6 4 10 10 H 1.48498 * 109.46835 * 300.00229 * 8 6 4 11 11 H 1.48495 * 109.47008 * 60.00067 * 8 6 4 12 12 N 1.46896 * 109.47198 * 120.00396 * 2 1 3 13 13 N 1.45402 * 111.00118 * 274.29953 * 12 2 1 14 14 C 1.47474 * 111.00170 * 139.14340 * 13 12 2 15 15 C 1.53510 * 87.93561 * 138.70429 * 14 13 12 16 16 C 1.47482 * 110.99881 * 235.11600 * 13 12 2 17 17 H 1.09003 * 109.47028 * 186.86205 * 1 2 3 18 18 H 1.09005 * 109.47049 * 306.85306 * 1 2 3 19 19 H 1.08999 * 109.47560 * 66.85568 * 1 2 3 20 20 H 0.96997 * 120.00273 * 357.12640 * 7 6 4 21 21 H 1.00899 * 111.00485 * 38.26039 * 12 2 1 22 22 H 1.08992 * 113.47804 * 253.47364 * 14 13 12 23 23 H 1.09005 * 113.47351 * 23.93905 * 14 13 12 24 24 H 1.09000 * 114.17423 * 220.33495 * 15 14 13 25 25 H 1.08994 * 114.34635 * 87.63073 * 15 14 13 26 26 H 1.08997 * 113.47834 * 336.06146 * 16 13 12 27 27 H 1.08998 * 113.47727 * 106.53031 * 16 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0322 -0.7103 -1.2306 5 1 2.5774 -1.6377 -1.1341 6 6 1.7959 -0.1764 -2.4795 7 7 1.9293 -0.9267 -3.5514 8 14 1.2859 1.6126 -2.6493 9 1 1.0936 1.9384 -4.0853 10 1 0.0136 1.8362 -1.9168 11 1 2.3444 2.4851 -2.0806 12 7 2.0197 -0.6926 1.1993 13 7 2.0974 0.2170 2.3311 14 6 1.6294 -0.4365 3.5675 15 6 2.7962 0.2399 4.3007 16 6 3.4526 0.2219 2.9130 17 1 -0.3633 -1.0203 0.1228 18 1 -0.3633 0.6164 0.8224 19 1 -0.3634 0.4039 -0.9449 20 1 2.2343 -1.8435 -3.4668 21 1 1.4429 -1.4915 1.4165 22 1 0.6500 -0.0903 3.8976 23 1 1.7057 -1.5235 3.5397 24 1 3.2897 -0.3955 5.0360 25 1 2.5727 1.2386 4.6757 26 1 4.0154 -0.6893 2.7106 27 1 4.0183 1.1262 2.6885 RHF calculation, no. of doubly occupied orbitals= 32 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000686777687.mol2 27 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:46:16 Heat of formation + Delta-G solvation = 36.846354 kcal Electronic energy + Delta-G solvation = -10018.548447 eV Core-core repulsion = 8198.446156 eV Total energy + Delta-G solvation = -1820.102291 eV No. of doubly occupied orbitals = 32 Molecular weight (most abundant/longest-lived isotopes) = 170.111 amu Computer time = 0.11 seconds Orbital eigenvalues (eV) -40.45648 -36.80696 -34.10006 -30.66872 -26.95803 -26.72227 -26.09693 -21.84394 -20.83897 -19.61767 -17.71326 -16.69121 -16.00876 -15.60898 -14.87085 -14.66755 -14.06000 -13.76673 -13.34328 -13.26767 -12.80914 -12.41413 -12.04934 -11.81380 -11.59724 -11.53992 -11.15244 -10.54969 -10.38193 -9.08030 -8.73323 -6.34779 1.45001 1.52640 1.72408 2.47497 2.76056 3.06446 3.55817 3.69533 4.16217 4.47514 4.52527 4.63218 4.65460 4.71899 4.79157 4.94619 4.95292 5.10417 5.25056 5.34638 5.44405 5.87728 6.05261 6.26483 6.67223 6.81047 7.41904 8.64150 Molecular weight = 170.11amu Principal moments of inertia in cm(-1) A = 0.073968 B = 0.013009 C = 0.012695 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 378.450192 B = 2151.850566 C = 2205.001175 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.167 4.167 2 C 0.201 3.799 3 H 0.027 0.973 4 C -0.590 4.590 5 H 0.020 0.980 6 C -0.020 4.020 7 N -0.939 5.939 8 Si 1.086 2.914 9 H -0.286 1.286 10 H -0.244 1.244 11 H -0.271 1.271 12 N -0.553 5.553 13 N -0.346 5.346 14 C -0.025 4.025 15 C -0.122 4.122 16 C 0.000 4.000 17 H 0.041 0.959 18 H 0.048 0.952 19 H 0.050 0.950 20 H 0.251 0.749 21 H 0.327 0.673 22 H 0.089 0.911 23 H 0.077 0.923 24 H 0.100 0.900 25 H 0.102 0.898 26 H 0.068 0.932 27 H 0.075 0.925 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.308 3.895 14.552 15.120 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.227 4.227 2 C 0.091 3.909 3 H 0.045 0.955 4 C -0.629 4.629 5 H 0.038 0.962 6 C -0.218 4.218 7 N -0.575 5.575 8 Si 0.908 3.092 9 H -0.212 1.212 10 H -0.169 1.169 11 H -0.196 1.196 12 N -0.275 5.275 13 N -0.159 5.159 14 C -0.155 4.155 15 C -0.161 4.161 16 C -0.129 4.129 17 H 0.060 0.940 18 H 0.067 0.933 19 H 0.069 0.931 20 H 0.060 0.940 21 H 0.145 0.855 22 H 0.108 0.892 23 H 0.095 0.905 24 H 0.119 0.881 25 H 0.121 0.879 26 H 0.086 0.914 27 H 0.094 0.906 Dipole moment (debyes) X Y Z Total from point charges -1.396 5.713 13.006 14.274 hybrid contribution 0.101 -2.501 0.982 2.689 sum -1.295 3.212 13.988 14.410 Atomic orbital electron populations 1.22697 0.99124 1.00148 1.00694 1.19227 0.90367 0.94194 0.87100 0.95507 1.22167 1.38905 1.09114 0.92745 0.96204 1.27119 0.94527 1.08509 0.91632 1.70994 1.45214 1.09140 1.32163 0.83547 0.78619 0.70773 0.76290 1.21159 1.16886 1.19600 1.64277 1.56134 1.06292 1.00749 1.71951 1.12156 1.32805 0.99012 1.24206 1.01034 0.98936 0.91350 1.23004 0.95453 1.02454 0.95179 1.23870 0.92805 1.01921 0.94338 0.93995 0.93336 0.93141 0.93957 0.85504 0.89215 0.90494 0.88137 0.87923 0.91363 0.90647 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -7.42 8.98 71.98 0.65 -6.77 15 2 C 0.20 9.99 2.40 44.17 0.11 10.09 15 3 H 0.03 1.39 6.73 -2.39 -0.02 1.38 15 4 C -0.59 -35.05 9.11 25.60 0.23 -34.82 15 5 H 0.02 1.30 8.06 -2.91 -0.02 1.27 15 6 C -0.02 -1.19 5.30 84.65 0.45 -0.74 15 7 N -0.94 -60.23 13.70 21.44 0.29 -59.94 15 8 Si 1.09 51.75 26.27 68.60 1.80 53.55 15 9 H -0.29 -13.52 7.11 99.48 0.71 -12.82 15 10 H -0.24 -10.38 5.72 99.48 0.57 -9.81 15 11 H -0.27 -12.26 7.11 99.48 0.71 -11.56 15 12 N -0.55 -24.06 6.41 -171.81 -1.10 -25.16 15 13 N -0.35 -12.41 6.58 -542.09 -3.57 -15.98 15 14 C -0.03 -0.66 7.72 83.57 0.65 -0.02 15 15 C -0.12 -2.60 8.47 30.94 0.26 -2.34 15 16 C 0.00 0.01 8.00 83.58 0.67 0.68 15 17 H 0.04 1.79 8.00 -2.39 -0.02 1.77 15 18 H 0.05 1.89 8.14 -2.38 -0.02 1.88 15 19 H 0.05 2.30 4.80 -2.39 -0.01 2.29 15 20 H 0.25 16.37 8.72 -92.71 -0.81 15.57 15 21 H 0.33 13.40 7.62 -204.85 -1.56 11.84 15 22 H 0.09 2.14 8.14 -2.39 -0.02 2.12 15 23 H 0.08 1.95 7.78 -2.38 -0.02 1.93 15 24 H 0.10 1.64 8.14 -2.39 -0.02 1.62 15 25 H 0.10 1.94 8.14 -2.39 -0.02 1.92 15 26 H 0.07 2.17 8.10 -2.39 -0.02 2.15 15 27 H 0.08 2.26 8.14 -2.39 -0.02 2.24 15 Total: -1.00 -67.51 223.39 -0.15 -67.66 By element: Atomic # 1 Polarization: 14.38 SS G_CDS: -0.59 Total: 13.78 kcal Atomic # 6 Polarization: -36.93 SS G_CDS: 3.01 Total: -33.91 kcal Atomic # 7 Polarization: -96.71 SS G_CDS: -4.37 Total: -101.08 kcal Atomic # 14 Polarization: 51.75 SS G_CDS: 1.80 Total: 53.55 kcal Total: -67.51 -0.15 -67.66 kcal The number of atoms in the molecule is 27 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000686777687.mol2 27 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 104.509 kcal (2) G-P(sol) polarization free energy of solvation -67.510 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 37.000 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.153 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.663 kcal (6) G-S(sol) free energy of system = (1) + (5) 36.846 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.11 seconds