Wall clock time and date at job start Mon Mar 30 2020 01:41:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31622 * 1 3 3 Si 1.86800 * 119.99908 * 2 1 4 4 H 1.48495 * 109.47561 * 270.00280 * 3 2 1 5 5 H 1.48505 * 109.47116 * 30.00175 * 3 2 1 6 6 H 1.48504 * 109.46959 * 149.99892 * 3 2 1 7 7 C 1.38806 * 119.99830 * 180.02562 * 2 1 3 8 8 H 1.08003 * 119.99678 * 180.02562 * 7 2 1 9 9 N 1.36931 * 120.00553 * 359.97438 * 7 2 1 10 10 C 1.46500 * 120.00400 * 180.02562 * 9 7 2 11 11 C 1.53006 * 109.46998 * 180.02562 * 10 9 7 12 12 N 1.46902 * 109.46626 * 179.97438 * 11 10 9 13 13 C 1.47476 * 111.00115 * 74.03357 * 12 11 10 14 14 C 1.53510 * 87.93628 * 138.70040 * 13 12 11 15 15 C 1.47479 * 110.99664 * 170.00118 * 12 11 10 16 16 H 0.97001 * 119.99731 * 359.97438 * 1 2 3 17 17 H 0.97010 * 119.99690 * 0.02562 * 9 7 2 18 18 H 1.09000 * 109.47175 * 60.00228 * 10 9 7 19 19 H 1.09001 * 109.47297 * 299.99735 * 10 9 7 20 20 H 1.08993 * 109.46955 * 300.00226 * 11 10 9 21 21 H 1.09000 * 109.47050 * 60.00054 * 11 10 9 22 22 H 1.08998 * 113.47495 * 253.46917 * 13 12 11 23 23 H 1.08998 * 113.47672 * 23.92839 * 13 12 11 24 24 H 1.09000 * 114.16725 * 220.33198 * 14 13 12 25 25 H 1.09000 * 114.34691 * 87.63298 * 14 13 12 26 26 H 1.09004 * 113.47955 * 336.06580 * 15 12 11 27 27 H 1.08997 * 113.47804 * 106.53006 * 15 12 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6178 0.0000 4 1 2.4977 2.0466 -1.4000 5 1 1.4476 2.6527 0.7001 6 1 3.5478 1.4402 0.7001 7 6 2.0102 -1.2021 -0.0005 8 1 3.0902 -1.2021 -0.0001 9 7 1.3256 -2.3880 -0.0005 10 6 2.0581 -3.6567 -0.0005 11 6 1.0638 -4.8197 -0.0012 12 7 1.7984 -6.0919 -0.0018 13 6 2.3906 -6.3609 1.3218 14 6 1.9651 -7.8261 1.1528 15 6 0.8884 -7.2276 0.2366 16 1 -0.4850 0.8401 0.0004 17 1 0.3555 -2.3880 -0.0005 18 1 2.6848 -3.7145 0.8895 19 1 2.6848 -3.7145 -0.8905 20 1 0.4369 -4.7621 0.8885 21 1 0.4375 -4.7617 -0.8914 22 1 3.4715 -6.2231 1.3499 23 1 1.8788 -5.8514 2.1382 24 1 1.5738 -8.2847 2.0609 25 1 2.6949 -8.4492 0.6359 26 1 -0.0245 -6.9496 0.7634 27 1 0.6961 -7.8246 -0.6548 RHF calculation, no. of doubly occupied orbitals= 32 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000697856895.mol2 27 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:41:20 Heat of formation + Delta-G solvation = 45.814920 kcal Electronic energy + Delta-G solvation = -9653.360325 eV Core-core repulsion = 7833.646940 eV Total energy + Delta-G solvation = -1819.713385 eV No. of doubly occupied orbitals = 32 Molecular weight (most abundant/longest-lived isotopes) = 170.111 amu Computer time = 0.12 seconds Orbital eigenvalues (eV) -39.75153 -34.81248 -31.88827 -29.58590 -26.10546 -25.54919 -23.02050 -20.98801 -19.73719 -17.15970 -15.76131 -15.54599 -14.69743 -14.29406 -13.65357 -13.01267 -12.83332 -12.38497 -11.84256 -11.26547 -10.96527 -10.87291 -10.74749 -10.45177 -10.33764 -9.98969 -9.67226 -8.85179 -8.67873 -6.89661 -5.73973 -3.02760 3.46071 3.50602 3.52705 4.17267 4.53167 4.64957 4.95318 5.34002 5.40965 5.56370 5.59684 5.67276 5.76653 5.79281 5.89029 6.15486 6.19483 6.29599 6.48369 6.82984 6.91187 7.32019 7.73184 8.45112 9.55748 10.13512 10.48471 11.49292 Molecular weight = 170.11amu Principal moments of inertia in cm(-1) A = 0.126504 B = 0.008670 C = 0.008346 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 221.282943 B = 3228.720028 C = 3354.172468 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.936 5.936 2 C -0.016 4.016 3 Si 0.909 3.091 4 H -0.289 1.289 5 H -0.291 1.291 6 H -0.282 1.282 7 C -0.237 4.237 8 H 0.071 0.929 9 N -0.734 5.734 10 C 0.159 3.841 11 C 0.014 3.986 12 N -0.471 5.471 13 C -0.002 4.002 14 C -0.149 4.149 15 C -0.004 4.004 16 H 0.255 0.745 17 H 0.383 0.617 18 H 0.017 0.983 19 H 0.027 0.973 20 H 0.041 0.959 21 H 0.075 0.925 22 H 0.082 0.918 23 H 0.069 0.931 24 H 0.071 0.929 25 H 0.090 0.910 26 H 0.067 0.933 27 H 0.081 0.919 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.222 -12.786 2.304 13.180 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.585 5.585 2 C -0.211 4.211 3 Si 0.740 3.260 4 H -0.217 1.217 5 H -0.218 1.218 6 H -0.207 1.207 7 C -0.369 4.369 8 H 0.089 0.911 9 N -0.379 5.379 10 C 0.032 3.968 11 C -0.115 4.115 12 N -0.194 5.194 13 C -0.131 4.131 14 C -0.186 4.186 15 C -0.133 4.133 16 H 0.065 0.935 17 H 0.216 0.784 18 H 0.035 0.965 19 H 0.045 0.955 20 H 0.059 0.941 21 H 0.094 0.906 22 H 0.101 0.899 23 H 0.088 0.912 24 H 0.090 0.910 25 H 0.108 0.892 26 H 0.085 0.915 27 H 0.099 0.901 Dipole moment (debyes) X Y Z Total from point charges 2.764 -12.592 1.692 13.002 hybrid contribution -0.490 1.106 0.670 1.383 sum 2.275 -11.486 2.362 11.945 Atomic orbital electron populations 1.69669 1.05147 1.25633 1.58007 1.24749 0.95553 0.97723 1.03095 0.86154 0.78614 0.83680 0.77540 1.21683 1.21769 1.20736 1.19243 0.91084 0.84074 1.42450 0.91123 1.42313 1.05860 1.00055 1.89661 1.20498 0.93291 0.84790 0.98255 1.22838 0.96958 0.90519 1.01165 1.68883 1.20455 1.02314 1.27740 1.23743 1.01853 0.95138 0.92327 1.23119 0.99078 0.96666 0.99767 1.23750 0.95691 0.94328 0.99550 0.93529 0.78417 0.96510 0.95521 0.94083 0.90606 0.89927 0.91246 0.91040 0.89190 0.91520 0.90076 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.94 -29.07 13.06 55.49 0.72 -28.35 15 2 C -0.02 -0.46 5.50 -17.43 -0.10 -0.56 15 3 Si 0.91 22.96 29.55 -169.99 -5.02 17.93 15 4 H -0.29 -7.26 7.11 56.52 0.40 -6.86 15 5 H -0.29 -7.36 7.11 56.52 0.40 -6.96 15 6 H -0.28 -6.91 7.11 56.52 0.40 -6.50 15 7 C -0.24 -6.95 9.99 -15.06 -0.15 -7.10 15 8 H 0.07 2.01 7.83 -52.48 -0.41 1.60 15 9 N -0.73 -19.76 5.60 -59.91 -0.34 -20.10 15 10 C 0.16 3.52 6.36 -4.04 -0.03 3.50 15 11 C 0.01 0.25 4.94 -3.82 -0.02 0.23 15 12 N -0.47 -7.42 6.41 -244.70 -1.57 -8.99 15 13 C 0.00 -0.02 7.00 -7.56 -0.05 -0.07 15 14 C -0.15 -1.61 8.47 -26.20 -0.22 -1.83 15 15 C 0.00 -0.05 7.70 -7.56 -0.06 -0.11 15 16 H 0.25 7.61 8.31 -40.82 -0.34 7.27 15 17 H 0.38 10.68 7.67 -40.82 -0.31 10.37 15 18 H 0.02 0.38 7.67 -51.93 -0.40 -0.02 15 19 H 0.03 0.61 8.14 -51.93 -0.42 0.19 15 20 H 0.04 0.74 7.56 -51.93 -0.39 0.35 15 21 H 0.08 1.41 8.14 -51.93 -0.42 0.99 15 22 H 0.08 1.10 8.14 -51.93 -0.42 0.67 15 23 H 0.07 0.96 7.70 -51.93 -0.40 0.56 15 24 H 0.07 0.65 8.14 -51.93 -0.42 0.23 15 25 H 0.09 0.90 8.14 -51.93 -0.42 0.48 15 26 H 0.07 0.81 7.77 -51.93 -0.40 0.40 15 27 H 0.08 0.93 8.14 -51.93 -0.42 0.51 15 LS Contribution 229.28 15.07 3.46 3.46 Total: -1.00 -31.34 229.28 -7.36 -38.70 By element: Atomic # 1 Polarization: 7.27 SS G_CDS: -3.99 Total: 3.28 kcal Atomic # 6 Polarization: -5.31 SS G_CDS: -0.62 Total: -5.94 kcal Atomic # 7 Polarization: -56.25 SS G_CDS: -1.18 Total: -57.43 kcal Atomic # 14 Polarization: 22.96 SS G_CDS: -5.02 Total: 17.93 kcal Total LS contribution 3.46 Total: 3.46 kcal Total: -31.34 -7.36 -38.70 kcal The number of atoms in the molecule is 27 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000697856895.mol2 27 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 84.519 kcal (2) G-P(sol) polarization free energy of solvation -31.341 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 53.178 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.363 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.704 kcal (6) G-S(sol) free energy of system = (1) + (5) 45.815 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.12 seconds