Wall clock time and date at job start Mon Mar 30 2020 01:40:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31516 * 1 3 3 Si 1.86805 * 120.00001 * 2 1 4 4 H 1.48502 * 109.47048 * 270.00165 * 3 2 1 5 5 H 1.48505 * 109.46781 * 29.99963 * 3 2 1 6 6 H 1.48501 * 109.47350 * 149.99639 * 3 2 1 7 7 C 1.37875 * 120.00377 * 179.97438 * 2 1 3 8 8 H 1.07992 * 120.00290 * 179.97438 * 7 2 1 9 9 C 1.50703 * 119.99676 * 0.02562 * 7 2 1 10 10 N 1.46907 * 109.47011 * 179.97438 * 9 7 2 11 11 C 1.46900 * 110.99836 * 179.97438 * 10 9 7 12 12 C 1.52996 * 109.46878 * 180.02562 * 11 10 9 13 13 C 1.53515 * 114.16965 * 185.00128 * 12 11 10 14 14 N 1.47481 * 87.93334 * 220.32733 * 13 12 11 15 15 C 1.47488 * 87.83530 * 27.00963 * 14 13 12 16 16 H 0.96999 * 120.00025 * 359.97438 * 1 2 3 17 17 H 1.08999 * 109.47329 * 59.99537 * 9 7 2 18 18 H 1.08996 * 109.47067 * 299.99757 * 9 7 2 19 19 H 1.00895 * 110.99863 * 303.95681 * 10 9 7 20 20 H 1.08997 * 109.47012 * 60.00319 * 11 10 9 21 21 H 1.09000 * 109.47318 * 300.00028 * 11 10 9 22 22 H 1.09002 * 113.38857 * 318.07963 * 12 11 10 23 23 H 1.09004 * 113.47747 * 105.56637 * 13 12 11 24 24 H 1.08995 * 113.53124 * 335.10698 * 13 12 11 25 25 H 1.00901 * 110.99857 * 138.69928 * 14 13 12 26 26 H 1.08996 * 113.47304 * 87.75121 * 15 14 13 27 27 H 1.08997 * 113.47652 * 218.22256 * 15 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6178 0.0000 4 1 2.4966 2.0465 -1.4001 5 1 1.4465 2.6527 0.7001 6 1 3.5467 1.4403 0.7001 7 6 2.0046 -1.1940 0.0005 8 1 3.0845 -1.1940 0.0001 9 6 1.2511 -2.4991 0.0005 10 7 2.2058 -3.6157 0.0005 11 6 1.5055 -4.9070 0.0011 12 6 2.5304 -6.0429 0.0018 13 6 1.9156 -7.4443 -0.1197 14 7 2.9021 -7.9051 0.8751 15 6 2.9304 -6.5279 1.4023 16 1 -0.4850 0.8400 0.0004 17 1 0.6247 -2.5571 -0.8896 18 1 0.6242 -2.5567 0.8903 19 1 2.8406 -3.5486 -0.7808 20 1 0.8804 -4.9817 -0.8886 21 1 0.8809 -4.9812 0.8913 22 1 3.3730 -5.8658 -0.6667 23 1 2.0493 -7.8934 -1.1038 24 1 0.8856 -7.4997 0.2324 25 1 2.4790 -8.5373 1.5380 26 1 2.1712 -6.3377 2.1609 27 1 3.9240 -6.2003 1.7079 RHF calculation, no. of doubly occupied orbitals= 32 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000710891080.mol2 27 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:40:32 Heat of formation + Delta-G solvation = 25.508951 kcal Electronic energy + Delta-G solvation = -9556.983336 eV Core-core repulsion = 7736.389418 eV Total energy + Delta-G solvation = -1820.593918 eV No. of doubly occupied orbitals = 32 Molecular weight (most abundant/longest-lived isotopes) = 170.111 amu Computer time = 0.11 seconds Orbital eigenvalues (eV) -39.47214 -35.03812 -32.42375 -29.06229 -26.08258 -25.62861 -22.98660 -21.31235 -19.37667 -16.69213 -15.89066 -15.38530 -14.67272 -14.57660 -13.44374 -13.04212 -12.67672 -12.33135 -11.81125 -11.46449 -10.99903 -10.86550 -10.76530 -10.49566 -10.18128 -9.83639 -9.20581 -8.92476 -8.47978 -7.28101 -6.03167 -4.05166 3.32222 3.38111 3.43085 4.33637 4.42205 4.60332 4.92641 5.32779 5.40591 5.45709 5.68985 5.78888 5.83050 5.94663 6.00602 6.13612 6.25773 6.58155 7.24594 7.27107 7.41819 7.78849 8.12836 8.39701 8.61793 9.04359 9.59899 11.08058 Molecular weight = 170.11amu Principal moments of inertia in cm(-1) A = 0.119716 B = 0.008310 C = 0.008021 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 233.830434 B = 3368.683042 C = 3489.968035 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.899 5.899 2 C 0.055 3.945 3 Si 0.900 3.100 4 H -0.281 1.281 5 H -0.287 1.287 6 H -0.272 1.272 7 C -0.514 4.514 8 H 0.063 0.937 9 C 0.193 3.807 10 N -0.689 5.689 11 C 0.068 3.932 12 C -0.106 4.106 13 C 0.002 3.998 14 N -0.635 5.635 15 C 0.013 3.987 16 H 0.261 0.739 17 H -0.014 1.014 18 H 0.027 0.973 19 H 0.329 0.671 20 H 0.021 0.979 21 H 0.063 0.937 22 H 0.098 0.902 23 H 0.079 0.921 24 H 0.064 0.936 25 H 0.314 0.686 26 H 0.065 0.935 27 H 0.083 0.917 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.581 -10.615 0.428 10.932 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.539 5.539 2 C -0.146 4.146 3 Si 0.727 3.273 4 H -0.207 1.207 5 H -0.212 1.212 6 H -0.197 1.197 7 C -0.553 4.553 8 H 0.081 0.919 9 C 0.066 3.934 10 N -0.319 5.319 11 C -0.063 4.063 12 C -0.126 4.126 13 C -0.129 4.129 14 N -0.259 5.259 15 C -0.118 4.118 16 H 0.071 0.929 17 H 0.004 0.996 18 H 0.045 0.955 19 H 0.145 0.855 20 H 0.039 0.961 21 H 0.082 0.918 22 H 0.117 0.883 23 H 0.098 0.902 24 H 0.082 0.918 25 H 0.125 0.875 26 H 0.084 0.916 27 H 0.102 0.898 Dipole moment (debyes) X Y Z Total from point charges 3.267 -10.646 0.720 11.159 hybrid contribution -0.929 1.046 -0.384 1.451 sum 2.338 -9.599 0.337 9.886 Atomic orbital electron populations 1.69965 1.06114 1.26795 1.50990 1.24999 0.94880 0.99407 0.95332 0.86473 0.79807 0.82950 0.78032 1.20720 1.21242 1.19728 1.21199 0.93555 0.90249 1.50263 0.91913 1.19562 0.90640 0.87487 0.95710 1.60649 1.21157 1.01159 1.48946 1.21861 0.94638 0.90043 0.99717 1.22753 0.99177 0.93100 0.97526 1.23641 0.95170 0.95852 0.98266 1.67328 1.38430 1.07217 1.12907 1.23584 1.02298 0.88974 0.96894 0.92914 0.99649 0.95504 0.85488 0.96054 0.91846 0.88334 0.90217 0.91783 0.87452 0.91644 0.89814 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -27.12 13.29 55.43 0.74 -26.38 15 2 C 0.06 1.59 5.46 -17.82 -0.10 1.49 15 3 Si 0.90 21.83 29.54 -169.99 -5.02 16.81 15 4 H -0.28 -6.70 7.11 56.52 0.40 -6.30 15 5 H -0.29 -6.88 7.11 56.52 0.40 -6.48 15 6 H -0.27 -6.50 7.11 56.52 0.40 -6.10 15 7 C -0.51 -14.76 9.32 -34.44 -0.32 -15.09 15 8 H 0.06 1.77 7.81 -52.49 -0.41 1.36 15 9 C 0.19 5.13 5.44 -4.97 -0.03 5.11 15 10 N -0.69 -14.95 6.49 -115.06 -0.75 -15.70 15 11 C 0.07 1.21 5.60 -3.83 -0.02 1.18 15 12 C -0.11 -1.56 4.24 -90.09 -0.38 -1.94 15 13 C 0.00 0.02 8.20 -7.54 -0.06 -0.04 15 14 N -0.64 -8.08 8.71 -122.62 -1.07 -9.15 15 15 C 0.01 0.17 8.19 -7.53 -0.06 0.11 15 16 H 0.26 7.41 8.31 -40.82 -0.34 7.07 15 17 H -0.01 -0.40 8.14 -51.93 -0.42 -0.82 15 18 H 0.03 0.77 8.14 -51.93 -0.42 0.34 15 19 H 0.33 6.81 8.72 -39.29 -0.34 6.47 15 20 H 0.02 0.38 8.14 -51.93 -0.42 -0.04 15 21 H 0.06 1.14 7.81 -51.93 -0.41 0.74 15 22 H 0.10 1.48 8.13 -51.93 -0.42 1.06 15 23 H 0.08 0.94 8.14 -51.93 -0.42 0.51 15 24 H 0.06 0.73 8.10 -51.93 -0.42 0.31 15 25 H 0.31 3.35 8.91 -39.29 -0.35 3.00 15 26 H 0.07 0.88 7.87 -51.93 -0.41 0.47 15 27 H 0.08 1.19 8.14 -51.93 -0.42 0.77 15 LS Contribution 232.16 15.07 3.50 3.50 Total: -1.00 -30.15 232.16 -7.58 -37.73 By element: Atomic # 1 Polarization: 6.38 SS G_CDS: -4.01 Total: 2.37 kcal Atomic # 6 Polarization: -8.20 SS G_CDS: -0.97 Total: -9.18 kcal Atomic # 7 Polarization: -50.15 SS G_CDS: -1.08 Total: -51.23 kcal Atomic # 14 Polarization: 21.83 SS G_CDS: -5.02 Total: 16.81 kcal Total LS contribution 3.50 Total: 3.50 kcal Total: -30.15 -7.58 -37.73 kcal The number of atoms in the molecule is 27 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000710891080.mol2 27 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 63.238 kcal (2) G-P(sol) polarization free energy of solvation -30.148 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 33.090 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.581 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.729 kcal (6) G-S(sol) free energy of system = (1) + (5) 25.509 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.12 seconds