Wall clock time and date at job start Mon Mar 30 2020 01:40:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31516 * 1 3 3 Si 1.86805 * 120.00001 * 2 1 4 4 H 1.48502 * 109.47048 * 270.00165 * 3 2 1 5 5 H 1.48505 * 109.46781 * 29.99963 * 3 2 1 6 6 H 1.48501 * 109.47350 * 149.99639 * 3 2 1 7 7 C 1.37875 * 120.00377 * 179.97438 * 2 1 3 8 8 H 1.07992 * 120.00290 * 179.97438 * 7 2 1 9 9 C 1.50703 * 119.99676 * 0.02562 * 7 2 1 10 10 N 1.46907 * 109.47011 * 179.97438 * 9 7 2 11 11 C 1.46900 * 110.99836 * 179.97438 * 10 9 7 12 12 C 1.52996 * 109.46878 * 180.02562 * 11 10 9 13 13 C 1.53515 * 114.16965 * 185.00128 * 12 11 10 14 14 N 1.47481 * 87.93334 * 220.32733 * 13 12 11 15 15 C 1.47488 * 87.83530 * 27.00963 * 14 13 12 16 16 H 0.96999 * 120.00025 * 359.97438 * 1 2 3 17 17 H 1.08999 * 109.47329 * 59.99537 * 9 7 2 18 18 H 1.08996 * 109.47067 * 299.99757 * 9 7 2 19 19 H 1.00895 * 110.99863 * 303.95681 * 10 9 7 20 20 H 1.08997 * 109.47012 * 60.00319 * 11 10 9 21 21 H 1.09000 * 109.47318 * 300.00028 * 11 10 9 22 22 H 1.09002 * 113.38857 * 318.07963 * 12 11 10 23 23 H 1.09004 * 113.47747 * 105.56637 * 13 12 11 24 24 H 1.08995 * 113.53124 * 335.10698 * 13 12 11 25 25 H 1.00901 * 110.99857 * 138.69928 * 14 13 12 26 26 H 1.08996 * 113.47304 * 87.75121 * 15 14 13 27 27 H 1.08997 * 113.47652 * 218.22256 * 15 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6178 0.0000 4 1 2.4966 2.0465 -1.4001 5 1 1.4465 2.6527 0.7001 6 1 3.5467 1.4403 0.7001 7 6 2.0046 -1.1940 0.0005 8 1 3.0845 -1.1940 0.0001 9 6 1.2511 -2.4991 0.0005 10 7 2.2058 -3.6157 0.0005 11 6 1.5055 -4.9070 0.0011 12 6 2.5304 -6.0429 0.0018 13 6 1.9156 -7.4443 -0.1197 14 7 2.9021 -7.9051 0.8751 15 6 2.9304 -6.5279 1.4023 16 1 -0.4850 0.8400 0.0004 17 1 0.6247 -2.5571 -0.8896 18 1 0.6242 -2.5567 0.8903 19 1 2.8406 -3.5486 -0.7808 20 1 0.8804 -4.9817 -0.8886 21 1 0.8809 -4.9812 0.8913 22 1 3.3730 -5.8658 -0.6667 23 1 2.0493 -7.8934 -1.1038 24 1 0.8856 -7.4997 0.2324 25 1 2.4790 -8.5373 1.5380 26 1 2.1712 -6.3377 2.1609 27 1 3.9240 -6.2003 1.7079 RHF calculation, no. of doubly occupied orbitals= 32 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000710891080.mol2 27 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:40:32 Heat of formation + Delta-G solvation = 0.984272 kcal Electronic energy + Delta-G solvation = -9558.046806 eV Core-core repulsion = 7736.389418 eV Total energy + Delta-G solvation = -1821.657387 eV No. of doubly occupied orbitals = 32 Molecular weight (most abundant/longest-lived isotopes) = 170.111 amu Computer time = 0.11 seconds Orbital eigenvalues (eV) -40.58947 -36.85438 -34.50885 -30.68151 -27.89917 -26.69024 -24.63230 -23.21330 -20.54025 -18.64678 -17.30523 -16.60882 -16.54132 -16.23716 -15.04032 -14.61817 -14.33591 -13.56669 -13.50237 -13.24505 -12.81537 -12.65884 -12.27173 -12.12429 -11.76032 -11.33262 -11.22614 -10.66461 -9.97679 -9.11371 -8.23330 -6.34796 1.41671 1.43433 1.55436 2.40138 3.10079 3.28991 3.32882 3.73108 4.05717 4.38310 4.42647 4.53139 4.65332 4.71907 4.89321 4.91772 5.06366 5.10497 5.25354 5.32406 5.61083 6.01159 6.33920 6.43544 6.71722 6.88367 7.36504 8.88433 Molecular weight = 170.11amu Principal moments of inertia in cm(-1) A = 0.119716 B = 0.008310 C = 0.008021 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 233.830434 B = 3368.683042 C = 3489.968035 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.935 5.935 2 C 0.001 3.999 3 Si 0.975 3.025 4 H -0.271 1.271 5 H -0.281 1.281 6 H -0.264 1.264 7 C -0.537 4.537 8 H 0.065 0.935 9 C 0.206 3.794 10 N -0.688 5.688 11 C 0.071 3.929 12 C -0.109 4.109 13 C 0.012 3.988 14 N -0.637 5.637 15 C 0.013 3.987 16 H 0.266 0.734 17 H -0.039 1.039 18 H 0.000 1.000 19 H 0.335 0.665 20 H 0.021 0.979 21 H 0.059 0.941 22 H 0.096 0.904 23 H 0.091 0.909 24 H 0.076 0.924 25 H 0.329 0.671 26 H 0.068 0.932 27 H 0.078 0.922 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.464 -10.880 0.403 11.426 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.575 5.575 2 C -0.197 4.197 3 Si 0.799 3.201 4 H -0.196 1.196 5 H -0.207 1.207 6 H -0.188 1.188 7 C -0.576 4.576 8 H 0.083 0.917 9 C 0.078 3.922 10 N -0.318 5.318 11 C -0.059 4.059 12 C -0.128 4.128 13 C -0.119 4.119 14 N -0.262 5.262 15 C -0.117 4.117 16 H 0.074 0.926 17 H -0.022 1.022 18 H 0.018 0.982 19 H 0.152 0.848 20 H 0.040 0.960 21 H 0.077 0.923 22 H 0.115 0.885 23 H 0.109 0.891 24 H 0.094 0.906 25 H 0.142 0.858 26 H 0.087 0.913 27 H 0.097 0.903 Dipole moment (debyes) X Y Z Total from point charges 4.161 -10.945 0.695 11.730 hybrid contribution -1.231 1.059 -0.371 1.665 sum 2.930 -9.887 0.325 10.317 Atomic orbital electron populations 1.70091 1.07854 1.28064 1.51530 1.25974 0.95799 1.03470 0.94500 0.85303 0.78485 0.77811 0.78511 1.19631 1.20678 1.18840 1.21564 0.93871 0.91448 1.50668 0.91679 1.19224 0.90699 0.89061 0.93173 1.60529 1.20444 1.01537 1.49323 1.21907 0.95394 0.89134 0.99472 1.22679 0.98532 0.93077 0.98482 1.23615 0.95636 0.93744 0.98928 1.67287 1.38913 1.06765 1.13268 1.23551 1.02094 0.89704 0.96336 0.92571 1.02162 0.98233 0.84759 0.96044 0.92267 0.88540 0.89095 0.90553 0.85836 0.91326 0.90336 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.94 -56.93 13.29 21.45 0.28 -56.65 15 2 C 0.00 0.04 5.46 84.65 0.46 0.50 15 3 Si 0.97 44.46 29.54 68.60 2.03 46.49 15 4 H -0.27 -11.87 7.11 99.48 0.71 -11.16 15 5 H -0.28 -12.51 7.11 99.48 0.71 -11.80 15 6 H -0.26 -11.60 7.11 99.48 0.71 -10.90 15 7 C -0.54 -31.05 9.32 25.60 0.24 -30.81 15 8 H 0.07 3.65 7.81 -2.91 -0.02 3.62 15 9 C 0.21 11.24 5.44 85.56 0.47 11.71 15 10 N -0.69 -29.94 6.49 -517.93 -3.36 -33.30 15 11 C 0.07 2.49 5.60 86.30 0.48 2.97 15 12 C -0.11 -3.03 4.24 -10.45 -0.04 -3.08 15 13 C 0.01 0.26 8.20 83.58 0.69 0.94 15 14 N -0.64 -14.70 8.71 -541.87 -4.72 -19.43 15 15 C 0.01 0.35 8.19 83.58 0.68 1.03 15 16 H 0.27 15.11 8.31 -92.71 -0.77 14.34 15 17 H -0.04 -2.29 8.14 -2.39 -0.02 -2.31 15 18 H 0.00 -0.03 8.14 -2.39 -0.02 -0.05 15 19 H 0.34 13.84 8.72 -89.70 -0.78 13.05 15 20 H 0.02 0.76 8.14 -2.39 -0.02 0.74 15 21 H 0.06 2.12 7.81 -2.39 -0.02 2.10 15 22 H 0.10 2.76 8.13 -2.39 -0.02 2.74 15 23 H 0.09 1.88 8.14 -2.39 -0.02 1.86 15 24 H 0.08 1.55 8.10 -2.39 -0.02 1.53 15 25 H 0.33 6.16 8.91 -89.69 -0.80 5.36 15 26 H 0.07 1.74 7.87 -2.39 -0.02 1.72 15 27 H 0.08 2.13 8.14 -2.39 -0.02 2.11 15 Total: -1.00 -63.44 232.16 -3.22 -66.66 By element: Atomic # 1 Polarization: 13.38 SS G_CDS: -0.43 Total: 12.95 kcal Atomic # 6 Polarization: -19.71 SS G_CDS: 2.97 Total: -16.73 kcal Atomic # 7 Polarization: -101.57 SS G_CDS: -7.80 Total: -109.37 kcal Atomic # 14 Polarization: 44.46 SS G_CDS: 2.03 Total: 46.49 kcal Total: -63.44 -3.22 -66.66 kcal The number of atoms in the molecule is 27 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000710891080.mol2 27 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 67.647 kcal (2) G-P(sol) polarization free energy of solvation -63.439 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 4.208 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -3.224 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.663 kcal (6) G-S(sol) free energy of system = (1) + (5) 0.984 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.11 seconds