Wall clock time and date at job start Mon Mar 30 2020 02:00:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31617 * 1 3 3 Si 1.86803 * 120.00125 * 2 1 4 4 H 1.48495 * 109.47349 * 239.99453 * 3 2 1 5 5 H 1.48505 * 109.47077 * 359.97438 * 3 2 1 6 6 H 1.48500 * 109.47093 * 119.99374 * 3 2 1 7 7 C 1.38815 * 120.00325 * 179.97438 * 2 1 3 8 8 H 1.07999 * 120.00267 * 180.02562 * 7 2 1 9 9 N 1.36938 * 119.99408 * 0.02562 * 7 2 1 10 10 C 1.46506 * 119.99589 * 179.97438 * 9 7 2 11 11 C 1.52999 * 109.46684 * 180.02562 * 10 9 7 12 12 O 1.42904 * 109.47221 * 65.00655 * 11 10 9 13 13 C 1.42898 * 113.99912 * 179.97438 * 12 11 10 14 14 C 1.53000 * 117.49899 * 218.61761 * 13 12 11 15 15 C 1.52997 * 60.00102 * 252.51073 * 14 13 12 16 16 H 0.97000 * 119.99693 * 0.02562 * 1 2 3 17 17 H 0.96995 * 120.00302 * 0.27434 * 9 7 2 18 18 H 1.09000 * 109.47212 * 300.00262 * 10 9 7 19 19 H 1.09001 * 109.46577 * 60.00336 * 10 9 7 20 20 H 1.09000 * 109.46738 * 185.00167 * 11 10 9 21 21 H 1.08994 * 109.47465 * 305.00253 * 11 10 9 22 22 H 1.08995 * 115.55264 * 4.32491 * 13 12 11 23 23 H 1.09000 * 117.49576 * 0.02562 * 14 13 12 24 24 H 1.08998 * 117.50181 * 145.01779 * 14 13 12 25 25 H 1.08999 * 117.50182 * 252.50399 * 15 14 13 26 26 H 1.09003 * 117.51559 * 107.47812 * 15 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 3.1041 1.6964 -1.2124 5 1 1.2852 2.7465 -0.0006 6 1 3.1039 1.6964 1.2126 7 6 2.0103 -1.2021 0.0005 8 1 3.0903 -1.2021 0.0010 9 7 1.3256 -2.3880 0.0005 10 6 2.0581 -3.6568 0.0005 11 6 1.0638 -4.8196 -0.0001 12 8 0.3221 -4.8115 -1.2215 13 6 -0.6395 -5.8635 -1.3246 14 6 -0.8158 -6.5280 -2.6915 15 6 -1.8983 -5.5917 -2.1507 16 1 -0.4850 0.8401 -0.0004 17 1 0.3556 -2.3880 -0.0039 18 1 2.6848 -3.7145 -0.8894 19 1 2.6847 -3.7144 0.8906 20 1 1.6058 -5.7611 0.0895 21 1 0.3794 -4.7129 0.8414 22 1 -0.7435 -6.4935 -0.4413 23 1 -0.1981 -6.1629 -3.5120 24 1 -1.0358 -7.5954 -2.7076 25 1 -2.8305 -6.0430 -1.8111 26 1 -1.9931 -4.6101 -2.6152 RHF calculation, no. of doubly occupied orbitals= 32 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000715035002.mol2 26 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:00:12 Heat of formation + Delta-G solvation = -7.205083 kcal Electronic energy + Delta-G solvation = -9699.880492 eV Core-core repulsion = 7780.149325 eV Total energy + Delta-G solvation = -1919.731167 eV No. of doubly occupied orbitals = 32 Molecular weight (most abundant/longest-lived isotopes) = 171.100 amu Computer time = 0.11 seconds Orbital eigenvalues (eV) -38.19746 -35.37567 -33.78082 -31.12258 -27.69185 -23.50256 -22.22215 -21.66271 -21.13692 -17.10140 -16.83669 -15.14011 -14.81895 -14.33391 -13.84251 -13.16648 -12.85993 -12.21830 -11.85596 -11.37836 -11.20741 -10.78562 -10.67452 -10.49376 -10.25908 -9.99074 -9.62574 -8.81441 -8.74872 -6.83152 -5.67593 -2.96001 3.49480 3.53087 3.54737 3.87944 4.03598 4.66488 4.97646 5.13756 5.36084 5.55383 5.60552 5.66389 5.74982 5.81619 5.97456 6.09837 6.31891 6.40414 6.66035 6.80981 7.68655 7.76148 8.51002 9.62157 10.21072 10.57085 11.55356 Molecular weight = 171.10amu Principal moments of inertia in cm(-1) A = 0.077178 B = 0.009729 C = 0.009037 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 362.710599 B = 2877.430738 C = 3097.616141 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.933 5.933 2 C -0.015 4.015 3 Si 0.908 3.092 4 H -0.286 1.286 5 H -0.291 1.291 6 H -0.286 1.286 7 C -0.240 4.240 8 H 0.069 0.931 9 N -0.728 5.728 10 C 0.152 3.848 11 C 0.058 3.942 12 O -0.341 6.341 13 C 0.019 3.981 14 C -0.195 4.195 15 C -0.186 4.186 16 H 0.255 0.745 17 H 0.387 0.613 18 H 0.026 0.974 19 H 0.034 0.966 20 H 0.046 0.954 21 H 0.051 0.949 22 H 0.104 0.896 23 H 0.098 0.902 24 H 0.094 0.906 25 H 0.096 0.904 26 H 0.102 0.898 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.989 -11.676 -1.560 11.822 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.582 5.582 2 C -0.210 4.210 3 Si 0.739 3.261 4 H -0.213 1.213 5 H -0.217 1.217 6 H -0.213 1.213 7 C -0.371 4.371 8 H 0.087 0.913 9 N -0.373 5.373 10 C 0.025 3.975 11 C -0.018 4.018 12 O -0.259 6.259 13 C -0.040 4.040 14 C -0.232 4.232 15 C -0.223 4.223 16 H 0.065 0.935 17 H 0.221 0.779 18 H 0.044 0.956 19 H 0.052 0.948 20 H 0.064 0.936 21 H 0.069 0.931 22 H 0.122 0.878 23 H 0.116 0.884 24 H 0.112 0.888 25 H 0.114 0.886 26 H 0.121 0.879 Dipole moment (debyes) X Y Z Total from point charges -0.825 -11.410 -1.695 11.565 hybrid contribution 0.095 0.740 0.132 0.758 sum -0.730 -10.670 -1.564 10.809 Atomic orbital electron populations 1.69670 1.05127 1.25623 1.57758 1.24744 0.95512 0.97648 1.03139 0.86254 0.78483 0.83559 0.77804 1.21296 1.21707 1.21309 1.19213 0.90989 0.84280 1.42655 0.91256 1.42306 1.06052 0.99677 1.89275 1.20721 0.92906 0.85388 0.98508 1.22877 0.94253 0.98556 0.86147 1.88012 1.50929 1.48224 1.38769 1.22597 0.93401 0.93361 0.94603 1.23355 1.03146 0.98093 0.98629 1.23300 0.93027 1.01588 1.04367 0.93537 0.77881 0.95589 0.94801 0.93570 0.93116 0.87787 0.88359 0.88777 0.88584 0.87909 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -29.45 13.06 55.49 0.72 -28.72 15 2 C -0.01 -0.44 5.50 -17.43 -0.10 -0.53 15 3 Si 0.91 23.11 29.55 -169.99 -5.02 18.08 15 4 H -0.29 -7.16 7.11 56.52 0.40 -6.76 15 5 H -0.29 -7.42 7.11 56.52 0.40 -7.02 15 6 H -0.29 -7.11 7.11 56.52 0.40 -6.71 15 7 C -0.24 -7.08 9.99 -15.06 -0.15 -7.23 15 8 H 0.07 1.96 7.83 -52.49 -0.41 1.55 15 9 N -0.73 -19.88 5.55 -59.90 -0.33 -20.21 15 10 C 0.15 3.31 6.65 -4.04 -0.03 3.28 15 11 C 0.06 1.05 5.94 37.16 0.22 1.27 15 12 O -0.34 -6.66 10.54 -35.23 -0.37 -7.03 15 13 C 0.02 0.29 6.44 -26.73 -0.17 0.12 15 14 C -0.19 -2.52 10.48 -26.73 -0.28 -2.80 15 15 C -0.19 -2.58 10.48 -26.73 -0.28 -2.86 15 16 H 0.25 7.74 8.31 -40.82 -0.34 7.40 15 17 H 0.39 11.21 7.67 -40.82 -0.31 10.89 15 18 H 0.03 0.58 8.14 -51.93 -0.42 0.16 15 19 H 0.03 0.70 8.14 -51.93 -0.42 0.28 15 20 H 0.05 0.68 8.14 -51.93 -0.42 0.25 15 21 H 0.05 0.89 8.14 -51.93 -0.42 0.47 15 22 H 0.10 1.32 7.93 -51.93 -0.41 0.90 15 23 H 0.10 1.34 8.14 -51.93 -0.42 0.92 15 24 H 0.09 0.97 8.14 -51.93 -0.42 0.55 15 25 H 0.10 1.10 8.14 -51.93 -0.42 0.68 15 26 H 0.10 1.60 8.14 -51.93 -0.42 1.18 15 LS Contribution 232.37 15.07 3.50 3.50 Total: -1.00 -32.47 232.37 -5.94 -38.40 By element: Atomic # 1 Polarization: 8.38 SS G_CDS: -3.65 Total: 4.73 kcal Atomic # 6 Polarization: -7.97 SS G_CDS: -0.78 Total: -8.75 kcal Atomic # 7 Polarization: -49.33 SS G_CDS: 0.39 Total: -48.93 kcal Atomic # 8 Polarization: -6.66 SS G_CDS: -0.37 Total: -7.03 kcal Atomic # 14 Polarization: 23.11 SS G_CDS: -5.02 Total: 18.08 kcal Total LS contribution 3.50 Total: 3.50 kcal Total: -32.47 -5.94 -38.40 kcal The number of atoms in the molecule is 26 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000715035002.mol2 26 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 31.199 kcal (2) G-P(sol) polarization free energy of solvation -32.466 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -1.267 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.938 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.404 kcal (6) G-S(sol) free energy of system = (1) + (5) -7.205 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.11 seconds