Wall clock time and date at job start Mon Mar 30 2020 02:00:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31617 * 1 3 3 Si 1.86803 * 120.00125 * 2 1 4 4 H 1.48495 * 109.47349 * 239.99453 * 3 2 1 5 5 H 1.48505 * 109.47077 * 359.97438 * 3 2 1 6 6 H 1.48500 * 109.47093 * 119.99374 * 3 2 1 7 7 C 1.38815 * 120.00325 * 179.97438 * 2 1 3 8 8 H 1.07999 * 120.00267 * 180.02562 * 7 2 1 9 9 N 1.36938 * 119.99408 * 0.02562 * 7 2 1 10 10 C 1.46506 * 119.99589 * 179.97438 * 9 7 2 11 11 C 1.52999 * 109.46684 * 180.02562 * 10 9 7 12 12 O 1.42904 * 109.47221 * 65.00655 * 11 10 9 13 13 C 1.42898 * 113.99912 * 179.97438 * 12 11 10 14 14 C 1.53000 * 117.49899 * 218.61761 * 13 12 11 15 15 C 1.52997 * 60.00102 * 252.51073 * 14 13 12 16 16 H 0.97000 * 119.99693 * 0.02562 * 1 2 3 17 17 H 0.96995 * 120.00302 * 0.27434 * 9 7 2 18 18 H 1.09000 * 109.47212 * 300.00262 * 10 9 7 19 19 H 1.09001 * 109.46577 * 60.00336 * 10 9 7 20 20 H 1.09000 * 109.46738 * 185.00167 * 11 10 9 21 21 H 1.08994 * 109.47465 * 305.00253 * 11 10 9 22 22 H 1.08995 * 115.55264 * 4.32491 * 13 12 11 23 23 H 1.09000 * 117.49576 * 0.02562 * 14 13 12 24 24 H 1.08998 * 117.50181 * 145.01779 * 14 13 12 25 25 H 1.08999 * 117.50182 * 252.50399 * 15 14 13 26 26 H 1.09003 * 117.51559 * 107.47812 * 15 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 3.1041 1.6964 -1.2124 5 1 1.2852 2.7465 -0.0006 6 1 3.1039 1.6964 1.2126 7 6 2.0103 -1.2021 0.0005 8 1 3.0903 -1.2021 0.0010 9 7 1.3256 -2.3880 0.0005 10 6 2.0581 -3.6568 0.0005 11 6 1.0638 -4.8196 -0.0001 12 8 0.3221 -4.8115 -1.2215 13 6 -0.6395 -5.8635 -1.3246 14 6 -0.8158 -6.5280 -2.6915 15 6 -1.8983 -5.5917 -2.1507 16 1 -0.4850 0.8401 -0.0004 17 1 0.3556 -2.3880 -0.0039 18 1 2.6848 -3.7145 -0.8894 19 1 2.6847 -3.7144 0.8906 20 1 1.6058 -5.7611 0.0895 21 1 0.3794 -4.7129 0.8414 22 1 -0.7435 -6.4935 -0.4413 23 1 -0.1981 -6.1629 -3.5120 24 1 -1.0358 -7.5954 -2.7076 25 1 -2.8305 -6.0430 -1.8111 26 1 -1.9931 -4.6101 -2.6152 RHF calculation, no. of doubly occupied orbitals= 32 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000715035002.mol2 26 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:00:12 Heat of formation + Delta-G solvation = -30.238012 kcal Electronic energy + Delta-G solvation = -9700.879274 eV Core-core repulsion = 7780.149325 eV Total energy + Delta-G solvation = -1920.729949 eV No. of doubly occupied orbitals = 32 Molecular weight (most abundant/longest-lived isotopes) = 171.100 amu Computer time = 0.13 seconds Orbital eigenvalues (eV) -39.47992 -36.95900 -35.47671 -33.16349 -29.53252 -25.58226 -23.26569 -22.88581 -22.78856 -19.27019 -18.11733 -16.86782 -16.18979 -16.03030 -15.27679 -15.09931 -14.63055 -13.83084 -13.36138 -13.05900 -12.74058 -12.40536 -12.29638 -12.16715 -11.92719 -11.68936 -11.32646 -10.96125 -9.98771 -9.01154 -7.94475 -5.24305 1.46545 1.51206 1.57237 2.56448 2.64293 2.95464 3.38794 3.92350 3.94837 4.10174 4.12341 4.39710 4.46105 4.57294 4.69503 4.76332 5.00268 5.02348 5.13943 5.26337 5.46903 6.26547 6.42598 7.32693 8.08712 8.32742 9.29413 Molecular weight = 171.10amu Principal moments of inertia in cm(-1) A = 0.077178 B = 0.009729 C = 0.009037 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 362.710599 B = 2877.430738 C = 3097.616141 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.972 5.972 2 C -0.078 4.078 3 Si 0.980 3.020 4 H -0.278 1.278 5 H -0.294 1.294 6 H -0.274 1.274 7 C -0.252 4.252 8 H 0.078 0.922 9 N -0.744 5.744 10 C 0.145 3.855 11 C 0.067 3.933 12 O -0.382 6.382 13 C -0.004 4.004 14 C -0.176 4.176 15 C -0.194 4.194 16 H 0.252 0.748 17 H 0.374 0.626 18 H 0.020 0.980 19 H 0.051 0.949 20 H 0.087 0.913 21 H 0.051 0.949 22 H 0.132 0.868 23 H 0.085 0.915 24 H 0.129 0.871 25 H 0.123 0.877 26 H 0.075 0.925 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.371 -12.747 -1.375 12.827 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.623 5.623 2 C -0.270 4.270 3 Si 0.808 3.192 4 H -0.204 1.204 5 H -0.220 1.220 6 H -0.199 1.199 7 C -0.384 4.384 8 H 0.096 0.904 9 N -0.388 5.388 10 C 0.019 3.981 11 C -0.010 4.010 12 O -0.301 6.301 13 C -0.062 4.062 14 C -0.214 4.214 15 C -0.231 4.231 16 H 0.060 0.940 17 H 0.206 0.794 18 H 0.038 0.962 19 H 0.069 0.931 20 H 0.105 0.895 21 H 0.069 0.931 22 H 0.150 0.850 23 H 0.104 0.896 24 H 0.147 0.853 25 H 0.141 0.859 26 H 0.093 0.907 Dipole moment (debyes) X Y Z Total from point charges -0.170 -12.521 -1.511 12.613 hybrid contribution -0.092 0.984 0.047 0.990 sum -0.263 -11.536 -1.464 11.632 Atomic orbital electron populations 1.69847 1.06843 1.26203 1.59380 1.25664 0.96451 1.01402 1.03508 0.85123 0.77133 0.78647 0.78303 1.20428 1.22009 1.19947 1.19689 0.91629 0.85465 1.41591 0.90416 1.42543 1.05691 1.01164 1.89354 1.20957 0.93784 0.84699 0.98672 1.22780 0.93805 0.98514 0.85855 1.87939 1.52248 1.50544 1.39348 1.23009 0.93074 0.93313 0.96788 1.23426 1.01534 0.99658 0.96738 1.23372 0.94268 1.00993 1.04445 0.93972 0.79439 0.96174 0.93125 0.89542 0.93055 0.85044 0.89629 0.85312 0.85857 0.90658 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.97 -62.37 13.06 21.65 0.28 -62.09 15 2 C -0.08 -4.70 5.50 84.86 0.47 -4.24 15 3 Si 0.98 47.60 29.55 68.60 2.03 49.63 15 4 H -0.28 -13.03 7.11 99.48 0.71 -12.32 15 5 H -0.29 -14.29 7.11 99.48 0.71 -13.58 15 6 H -0.27 -12.62 7.11 99.48 0.71 -11.91 15 7 C -0.25 -14.88 9.99 84.03 0.84 -14.04 15 8 H 0.08 4.34 7.83 -2.91 -0.02 4.32 15 9 N -0.74 -40.95 5.55 -343.44 -1.91 -42.85 15 10 C 0.15 6.19 6.65 86.38 0.57 6.76 15 11 C 0.07 2.29 5.94 71.98 0.43 2.72 15 12 O -0.38 -14.68 10.54 -148.98 -1.57 -16.25 15 13 C 0.00 -0.12 6.44 30.59 0.20 0.08 15 14 C -0.18 -4.17 10.48 30.59 0.32 -3.85 15 15 C -0.19 -5.16 10.48 30.59 0.32 -4.84 15 16 H 0.25 15.54 8.31 -92.71 -0.77 14.77 15 17 H 0.37 22.14 7.67 -92.71 -0.71 21.43 15 18 H 0.02 0.89 8.14 -2.39 -0.02 0.87 15 19 H 0.05 2.00 8.14 -2.39 -0.02 1.98 15 20 H 0.09 2.26 8.14 -2.39 -0.02 2.24 15 21 H 0.05 1.74 8.14 -2.39 -0.02 1.72 15 22 H 0.13 2.93 7.93 -2.39 -0.02 2.91 15 23 H 0.09 2.24 8.14 -2.39 -0.02 2.22 15 24 H 0.13 2.15 8.14 -2.39 -0.02 2.13 15 25 H 0.12 2.54 8.14 -2.39 -0.02 2.52 15 26 H 0.07 2.40 8.14 -2.39 -0.02 2.38 15 Total: -1.00 -69.70 232.37 2.42 -67.27 By element: Atomic # 1 Polarization: 21.24 SS G_CDS: 0.44 Total: 21.68 kcal Atomic # 6 Polarization: -20.55 SS G_CDS: 3.15 Total: -17.40 kcal Atomic # 7 Polarization: -103.31 SS G_CDS: -1.62 Total: -104.94 kcal Atomic # 8 Polarization: -14.68 SS G_CDS: -1.57 Total: -16.25 kcal Atomic # 14 Polarization: 47.60 SS G_CDS: 2.03 Total: 49.63 kcal Total: -69.70 2.42 -67.27 kcal The number of atoms in the molecule is 26 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000715035002.mol2 26 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 37.036 kcal (2) G-P(sol) polarization free energy of solvation -69.696 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -32.660 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.422 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.274 kcal (6) G-S(sol) free energy of system = (1) + (5) -30.238 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.13 seconds