Wall clock time and date at job start Mon Mar 30 2020 02:05:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31621 * 1 3 3 Si 1.86802 * 120.00152 * 2 1 4 4 H 1.48504 * 109.46950 * 269.99846 * 3 2 1 5 5 H 1.48494 * 109.47156 * 30.00026 * 3 2 1 6 6 H 1.48495 * 109.46921 * 150.00161 * 3 2 1 7 7 C 1.38819 * 119.99889 * 180.02562 * 2 1 3 8 8 H 1.07997 * 119.99908 * 359.97438 * 7 2 1 9 9 N 1.36932 * 119.99790 * 180.02562 * 7 2 1 10 10 C 1.46506 * 120.00091 * 179.97438 * 9 7 2 11 11 C 1.52994 * 109.47242 * 180.02562 * 10 9 7 12 12 H 1.08995 * 112.85533 * 43.80121 * 11 10 9 13 13 C 1.53785 * 113.61259 * 174.99946 * 11 10 9 14 14 C 1.53780 * 87.07917 * 140.05997 * 13 11 10 15 15 H 1.09004 * 113.61517 * 219.93192 * 14 13 11 16 16 O 1.42903 * 113.61428 * 89.11954 * 14 13 11 17 17 C 1.53776 * 87.17872 * 334.52539 * 14 13 11 18 18 H 0.97002 * 119.99724 * 359.97438 * 1 2 3 19 19 H 0.97000 * 120.00399 * 359.97438 * 9 7 2 20 20 H 1.08995 * 109.46715 * 59.99602 * 10 9 7 21 21 H 1.09004 * 109.46629 * 300.00142 * 10 9 7 22 22 H 1.09003 * 113.61308 * 25.51439 * 13 11 10 23 23 H 1.08996 * 113.69143 * 254.62435 * 13 11 10 24 24 H 0.96700 * 114.00311 * 181.52832 * 16 14 13 25 25 H 1.08996 * 113.61636 * 140.01719 * 17 14 13 26 26 H 1.08994 * 113.61383 * 270.92752 * 17 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2503 1.6177 0.0000 4 1 2.4978 2.0464 -1.4001 5 1 1.4478 2.6526 0.7000 6 1 3.5478 1.4401 0.7000 7 6 2.0103 -1.2022 -0.0005 8 1 1.4703 -2.1375 -0.0005 9 7 3.3796 -1.2022 0.0000 10 6 4.1122 -2.4710 0.0000 11 6 5.6164 -2.1914 0.0013 12 1 5.8996 -1.4016 0.6970 13 6 6.4784 -3.4590 0.1242 14 6 7.4259 -2.8193 -0.9044 15 1 7.8163 -3.5258 -1.6369 16 8 8.4458 -2.0089 -0.3167 17 6 6.2147 -2.0164 -1.4075 18 1 -0.4850 0.8401 0.0004 19 1 3.8646 -0.3622 0.0004 20 1 3.8491 -3.0423 -0.8902 21 1 3.8484 -3.0427 0.8898 22 1 5.9840 -4.3601 -0.2388 23 1 6.9269 -3.5898 1.1090 24 1 9.0306 -1.5851 -0.9597 25 1 6.4501 -0.9820 -1.6580 26 1 5.6485 -2.5238 -2.1885 RHF calculation, no. of doubly occupied orbitals= 32 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000720994980.mol2 26 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:05:09 Heat of formation + Delta-G solvation = -19.118086 kcal Electronic energy + Delta-G solvation = -9860.208838 eV Core-core repulsion = 7939.961085 eV Total energy + Delta-G solvation = -1920.247753 eV No. of doubly occupied orbitals = 32 Molecular weight (most abundant/longest-lived isotopes) = 171.100 amu Computer time = 0.12 seconds Orbital eigenvalues (eV) -39.26017 -35.41093 -33.80075 -31.12710 -27.11734 -25.54072 -23.06777 -21.24485 -19.49929 -17.67076 -16.80176 -15.19957 -14.72866 -14.50930 -13.78555 -13.23302 -12.69989 -12.44000 -12.21470 -11.77026 -11.41077 -10.86541 -10.57846 -10.43248 -10.12757 -9.93201 -9.58368 -9.43144 -8.83553 -7.16742 -5.72882 -3.07294 3.40884 3.44737 3.48102 4.10546 4.63348 4.70417 4.89443 5.01019 5.09263 5.56387 5.65275 5.83208 5.87560 5.97728 6.05893 6.14167 6.36329 6.44526 6.76330 6.90796 7.62762 8.04561 8.46894 9.26722 9.99515 10.20517 11.45839 Molecular weight = 171.10amu Principal moments of inertia in cm(-1) A = 0.075880 B = 0.011275 C = 0.010242 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 368.917461 B = 2482.755405 C = 2733.313584 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.936 5.936 2 C 0.002 3.998 3 Si 0.885 3.115 4 H -0.285 1.285 5 H -0.291 1.291 6 H -0.277 1.277 7 C -0.243 4.243 8 H 0.090 0.910 9 N -0.756 5.756 10 C 0.165 3.835 11 C -0.112 4.112 12 H 0.090 0.910 13 C -0.125 4.125 14 C 0.074 3.926 15 H 0.063 0.937 16 O -0.553 6.553 17 C -0.164 4.164 18 H 0.259 0.741 19 H 0.361 0.639 20 H 0.027 0.973 21 H 0.026 0.974 22 H 0.094 0.906 23 H 0.072 0.928 24 H 0.377 0.623 25 H 0.068 0.932 26 H 0.089 0.911 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 15.025 -4.417 -2.591 15.874 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.585 5.585 2 C -0.193 4.193 3 Si 0.715 3.285 4 H -0.211 1.211 5 H -0.217 1.217 6 H -0.203 1.203 7 C -0.373 4.373 8 H 0.107 0.893 9 N -0.401 5.401 10 C 0.038 3.962 11 C -0.130 4.130 12 H 0.108 0.892 13 C -0.163 4.163 14 C 0.015 3.985 15 H 0.080 0.920 16 O -0.358 6.358 17 C -0.201 4.201 18 H 0.069 0.931 19 H 0.193 0.807 20 H 0.045 0.955 21 H 0.044 0.956 22 H 0.112 0.888 23 H 0.091 0.909 24 H 0.224 0.776 25 H 0.086 0.914 26 H 0.108 0.892 Dipole moment (debyes) X Y Z Total from point charges 14.491 -4.707 -2.034 15.371 hybrid contribution 0.726 1.453 -0.541 1.712 sum 15.217 -3.254 -2.575 15.772 Atomic orbital electron populations 1.69708 1.05097 1.25763 1.57902 1.24674 0.95248 0.97206 1.02190 0.86526 0.79256 0.84934 0.77748 1.21126 1.21718 1.20319 1.19102 0.80789 0.94737 1.42643 0.89263 1.42720 1.03959 1.02385 1.91072 1.20649 0.87995 0.89179 0.98375 1.22736 0.95683 0.97712 0.96898 0.89184 1.23013 0.95890 0.97919 0.99506 1.22789 0.87302 0.92670 0.95735 0.91961 1.86466 1.45226 1.66822 1.37318 1.23717 0.97453 1.00939 0.98034 0.93115 0.80681 0.95498 0.95570 0.88760 0.90897 0.77643 0.91372 0.89208 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.94 -30.15 13.97 55.49 0.78 -29.38 15 2 C 0.00 0.07 5.50 -17.43 -0.10 -0.03 15 3 Si 0.88 22.84 27.74 -169.99 -4.71 18.12 15 4 H -0.28 -7.25 7.11 56.52 0.40 -6.84 15 5 H -0.29 -7.54 7.11 56.52 0.40 -7.14 15 6 H -0.28 -6.80 6.52 56.52 0.37 -6.43 15 7 C -0.24 -7.16 10.47 -15.06 -0.16 -7.31 15 8 H 0.09 2.79 8.06 -52.49 -0.42 2.37 15 9 N -0.76 -18.96 5.41 -59.91 -0.32 -19.28 15 10 C 0.17 3.36 6.10 -4.04 -0.02 3.33 15 11 C -0.11 -1.85 3.69 -89.66 -0.33 -2.18 15 12 H 0.09 1.62 8.14 -51.93 -0.42 1.19 15 13 C -0.13 -1.69 7.47 -25.92 -0.19 -1.88 15 14 C 0.07 0.91 5.27 -25.92 -0.14 0.78 15 15 H 0.06 0.64 8.14 -51.93 -0.42 0.21 15 16 O -0.55 -6.93 13.59 -35.23 -0.48 -7.40 15 17 C -0.16 -2.35 7.49 -25.77 -0.19 -2.54 15 18 H 0.26 7.91 8.31 -40.82 -0.34 7.57 15 19 H 0.36 8.86 5.53 -40.82 -0.23 8.64 15 20 H 0.03 0.54 7.86 -51.93 -0.41 0.14 15 21 H 0.03 0.55 8.14 -51.93 -0.42 0.12 15 22 H 0.09 1.13 8.10 -51.93 -0.42 0.71 15 23 H 0.07 0.98 8.14 -51.93 -0.42 0.56 15 24 H 0.38 2.94 9.12 45.56 0.42 3.36 15 25 H 0.07 0.98 8.14 -51.93 -0.42 0.56 15 26 H 0.09 1.25 7.91 -51.93 -0.41 0.84 15 LS Contribution 223.01 15.07 3.36 3.36 Total: -1.00 -33.29 223.01 -5.27 -38.56 By element: Atomic # 1 Polarization: 8.60 SS G_CDS: -2.75 Total: 5.85 kcal Atomic # 6 Polarization: -8.70 SS G_CDS: -1.13 Total: -9.84 kcal Atomic # 7 Polarization: -49.11 SS G_CDS: 0.45 Total: -48.65 kcal Atomic # 8 Polarization: -6.93 SS G_CDS: -0.48 Total: -7.40 kcal Atomic # 14 Polarization: 22.84 SS G_CDS: -4.71 Total: 18.12 kcal Total LS contribution 3.36 Total: 3.36 kcal Total: -33.29 -5.27 -38.56 kcal The number of atoms in the molecule is 26 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000720994980.mol2 26 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 19.444 kcal (2) G-P(sol) polarization free energy of solvation -33.294 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -13.850 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.268 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.562 kcal (6) G-S(sol) free energy of system = (1) + (5) -19.118 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.12 seconds