Wall clock time and date at job start Mon Mar 30 2020 01:49:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46499 * 1 3 3 C 1.36941 * 120.00400 * 2 1 4 4 H 1.07992 * 120.00343 * 202.34961 * 3 2 1 5 5 C 1.38811 * 119.99664 * 22.35455 * 3 2 1 6 6 N 1.31624 * 120.00063 * 11.34942 * 5 3 2 7 7 Si 1.86802 * 119.99951 * 191.34295 * 5 3 2 8 8 H 1.48494 * 109.47096 * 0.02562 * 7 5 3 9 9 H 1.48498 * 109.46830 * 120.00367 * 7 5 3 10 10 H 1.48503 * 109.46736 * 239.99943 * 7 5 3 11 11 C 1.46509 * 120.00083 * 180.02562 * 2 1 3 12 12 C 1.52998 * 109.46834 * 270.00071 * 11 2 1 13 13 H 1.09002 * 112.78845 * 56.30817 * 12 11 2 14 14 C 1.53512 * 113.47288 * 187.10929 * 12 11 2 15 15 C 1.53518 * 83.57318 * 140.79257 * 14 12 11 16 16 N 1.47476 * 87.93186 * 333.97721 * 15 14 12 17 17 H 1.08998 * 109.46934 * 274.20918 * 1 2 3 18 18 H 1.09000 * 109.46727 * 34.20764 * 1 2 3 19 19 H 1.09002 * 109.47038 * 154.20686 * 1 2 3 20 20 H 0.97003 * 120.00194 * 180.02562 * 6 5 3 21 21 H 1.08999 * 109.46888 * 150.00267 * 11 2 1 22 22 H 1.08998 * 109.46667 * 30.00105 * 11 2 1 23 23 H 1.08997 * 114.17308 * 27.14892 * 14 12 11 24 24 H 1.08997 * 114.34375 * 254.45078 * 14 12 11 25 25 H 1.08995 * 113.47602 * 219.20976 * 15 14 12 26 26 H 1.09000 * 113.52612 * 88.75303 * 15 14 12 27 27 H 1.00898 * 111.00237 * 138.70216 * 16 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1498 1.1859 0.0000 4 1 3.1689 1.2210 -0.3556 5 6 1.5340 2.3429 0.4572 6 7 0.3844 2.2690 1.0940 7 14 2.3369 4.0047 0.1690 8 1 3.6139 3.8168 -0.5651 9 1 1.4269 4.8616 -0.6328 10 1 2.6076 4.6568 1.4754 11 6 2.1976 -1.2688 -0.0006 12 6 2.4525 -1.7110 1.4417 13 1 1.5359 -1.7961 2.0255 14 6 3.3640 -2.9413 1.5520 15 6 3.9444 -2.1888 2.7577 16 7 3.5090 -0.9342 2.1165 17 1 -0.3633 0.0754 1.0249 18 1 -0.3633 0.8499 -0.5778 19 1 -0.3633 -0.9253 -0.4472 20 1 -0.0461 3.0775 1.4132 21 1 3.1500 -1.1382 -0.5143 22 1 1.6084 -2.0281 -0.5148 23 1 4.0599 -3.0571 0.7211 24 1 2.8442 -3.8640 1.8098 25 1 5.0271 -2.2786 2.8455 26 1 3.4267 -2.4008 3.6932 27 1 3.1141 -0.2997 2.7944 RHF calculation, no. of doubly occupied orbitals= 32 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000885227873.mol2 27 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:49:13 Heat of formation + Delta-G solvation = 56.924853 kcal Electronic energy + Delta-G solvation = -10163.676278 eV Core-core repulsion = 8344.444656 eV Total energy + Delta-G solvation = -1819.231622 eV No. of doubly occupied orbitals = 32 Molecular weight (most abundant/longest-lived isotopes) = 170.111 amu Computer time = 0.14 seconds Orbital eigenvalues (eV) -38.92690 -35.05724 -31.12227 -27.72261 -26.80473 -25.68544 -23.16777 -20.61660 -18.85282 -16.74078 -16.16750 -14.82854 -14.25924 -13.67027 -13.44192 -12.48928 -12.13950 -11.70350 -11.34369 -10.90151 -10.80629 -10.61429 -10.45341 -10.38857 -9.92675 -9.78952 -9.56682 -8.45283 -8.23713 -6.60967 -5.58781 -3.02324 3.46460 3.53413 3.56608 4.61828 4.82122 5.02167 5.33288 5.57527 5.73411 5.93915 5.98849 6.12444 6.20155 6.27919 6.48579 6.60654 6.81209 6.90618 7.04336 7.46938 7.80652 7.97610 8.00023 8.54266 9.38990 10.01597 10.50095 11.47375 Molecular weight = 170.11amu Principal moments of inertia in cm(-1) A = 0.057479 B = 0.015420 C = 0.013587 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 487.013343 B = 1815.344251 C = 2060.228585 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.164 3.836 2 N -0.603 5.603 3 C -0.228 4.228 4 H 0.070 0.930 5 C -0.007 4.007 6 N -0.917 5.917 7 Si 0.903 3.097 8 H -0.279 1.279 9 H -0.293 1.293 10 H -0.293 1.293 11 C 0.165 3.835 12 C 0.021 3.979 13 H 0.061 0.939 14 C -0.148 4.148 15 C -0.007 4.007 16 N -0.604 5.604 17 H 0.025 0.975 18 H 0.044 0.956 19 H -0.006 1.006 20 H 0.248 0.752 21 H 0.051 0.949 22 H 0.039 0.961 23 H 0.086 0.914 24 H 0.062 0.938 25 H 0.072 0.928 26 H 0.051 0.949 27 H 0.322 0.678 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.163 -7.803 1.189 8.503 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C 0.019 3.981 2 N -0.325 5.325 3 C -0.358 4.358 4 H 0.087 0.913 5 C -0.203 4.203 6 N -0.564 5.564 7 Si 0.734 3.266 8 H -0.204 1.204 9 H -0.220 1.220 10 H -0.220 1.220 11 C 0.038 3.962 12 C -0.092 4.092 13 H 0.079 0.921 14 C -0.186 4.186 15 C -0.138 4.138 16 N -0.228 5.228 17 H 0.043 0.957 18 H 0.063 0.937 19 H 0.013 0.987 20 H 0.058 0.942 21 H 0.069 0.931 22 H 0.057 0.943 23 H 0.105 0.895 24 H 0.080 0.920 25 H 0.091 0.909 26 H 0.069 0.931 27 H 0.135 0.865 Dipole moment (debyes) X Y Z Total from point charges 3.654 -7.403 0.625 8.279 hybrid contribution -0.390 0.775 0.892 1.245 sum 3.264 -6.628 1.517 7.542 Atomic orbital electron populations 1.20788 0.82829 0.95416 0.99053 1.44001 1.01703 1.00954 1.85856 1.19254 0.97473 0.85017 1.34016 0.91265 1.24983 0.97850 0.98354 0.99138 1.70078 1.18157 1.26530 1.41677 0.86186 0.78579 0.84598 0.77263 1.20423 1.21983 1.21999 1.20817 0.95846 0.87939 0.91640 1.23867 0.93344 0.91251 1.00765 0.92131 1.23224 0.99815 0.96952 0.98636 1.23468 1.00708 0.93611 0.96013 1.67281 1.26329 1.06910 1.22323 0.95698 0.93723 0.98729 0.94176 0.93073 0.94273 0.89524 0.91970 0.90923 0.93076 0.86543 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.16 4.17 9.01 59.85 0.54 4.71 15 2 N -0.60 -15.65 2.93 -181.12 -0.53 -16.18 15 3 C -0.23 -6.45 9.67 -15.06 -0.15 -6.59 15 4 H 0.07 1.98 7.84 -52.49 -0.41 1.57 15 5 C -0.01 -0.20 5.13 -17.43 -0.09 -0.29 15 6 N -0.92 -27.37 10.59 55.49 0.59 -26.78 15 7 Si 0.90 22.75 29.57 -169.99 -5.03 17.73 15 8 H -0.28 -6.91 7.11 56.52 0.40 -6.51 15 9 H -0.29 -7.39 7.11 56.52 0.40 -6.99 15 10 H -0.29 -7.43 7.11 56.52 0.40 -7.03 15 11 C 0.17 3.56 5.72 -4.04 -0.02 3.54 15 12 C 0.02 0.42 4.23 -71.44 -0.30 0.11 15 13 H 0.06 1.23 8.14 -51.93 -0.42 0.81 15 14 C -0.15 -2.26 8.01 -26.20 -0.21 -2.47 15 15 C -0.01 -0.11 8.62 -7.55 -0.07 -0.17 15 16 N -0.60 -12.06 8.50 -115.44 -0.98 -13.04 15 17 H 0.02 0.68 7.42 -51.93 -0.39 0.29 15 18 H 0.04 1.22 7.19 -51.93 -0.37 0.85 15 19 H -0.01 -0.13 7.84 -51.93 -0.41 -0.54 15 20 H 0.25 7.21 8.31 -40.82 -0.34 6.87 15 21 H 0.05 1.12 8.03 -51.93 -0.42 0.71 15 22 H 0.04 0.76 7.86 -51.93 -0.41 0.35 15 23 H 0.09 1.29 8.12 -51.93 -0.42 0.87 15 24 H 0.06 0.82 8.14 -51.93 -0.42 0.40 15 25 H 0.07 1.05 8.14 -51.93 -0.42 0.63 15 26 H 0.05 0.73 8.14 -51.93 -0.42 0.31 15 27 H 0.32 6.80 8.91 -39.29 -0.35 6.45 15 LS Contribution 227.39 15.07 3.43 3.43 Total: -1.00 -30.16 227.39 -6.82 -36.98 By element: Atomic # 1 Polarization: 3.04 SS G_CDS: -4.00 Total: -0.96 kcal Atomic # 6 Polarization: -0.87 SS G_CDS: -0.30 Total: -1.17 kcal Atomic # 7 Polarization: -55.07 SS G_CDS: -0.92 Total: -56.00 kcal Atomic # 14 Polarization: 22.75 SS G_CDS: -5.03 Total: 17.73 kcal Total LS contribution 3.43 Total: 3.43 kcal Total: -30.16 -6.82 -36.98 kcal The number of atoms in the molecule is 27 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000885227873.mol2 27 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 93.900 kcal (2) G-P(sol) polarization free energy of solvation -30.155 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 63.745 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.820 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.975 kcal (6) G-S(sol) free energy of system = (1) + (5) 56.925 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.15 seconds