Wall clock time and date at job start Mon Mar 30 2020 01:49:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46499 * 1 3 3 C 1.36941 * 120.00400 * 2 1 4 4 H 1.07992 * 120.00343 * 202.34961 * 3 2 1 5 5 C 1.38811 * 119.99664 * 22.35455 * 3 2 1 6 6 N 1.31624 * 120.00063 * 11.34942 * 5 3 2 7 7 Si 1.86802 * 119.99951 * 191.34295 * 5 3 2 8 8 H 1.48494 * 109.47096 * 0.02562 * 7 5 3 9 9 H 1.48498 * 109.46830 * 120.00367 * 7 5 3 10 10 H 1.48503 * 109.46736 * 239.99943 * 7 5 3 11 11 C 1.46509 * 120.00083 * 180.02562 * 2 1 3 12 12 C 1.52998 * 109.46834 * 270.00071 * 11 2 1 13 13 H 1.09002 * 112.78845 * 56.30817 * 12 11 2 14 14 C 1.53512 * 113.47288 * 187.10929 * 12 11 2 15 15 C 1.53518 * 83.57318 * 140.79257 * 14 12 11 16 16 N 1.47476 * 87.93186 * 333.97721 * 15 14 12 17 17 H 1.08998 * 109.46934 * 274.20918 * 1 2 3 18 18 H 1.09000 * 109.46727 * 34.20764 * 1 2 3 19 19 H 1.09002 * 109.47038 * 154.20686 * 1 2 3 20 20 H 0.97003 * 120.00194 * 180.02562 * 6 5 3 21 21 H 1.08999 * 109.46888 * 150.00267 * 11 2 1 22 22 H 1.08998 * 109.46667 * 30.00105 * 11 2 1 23 23 H 1.08997 * 114.17308 * 27.14892 * 14 12 11 24 24 H 1.08997 * 114.34375 * 254.45078 * 14 12 11 25 25 H 1.08995 * 113.47602 * 219.20976 * 15 14 12 26 26 H 1.09000 * 113.52612 * 88.75303 * 15 14 12 27 27 H 1.00898 * 111.00237 * 138.70216 * 16 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1498 1.1859 0.0000 4 1 3.1689 1.2210 -0.3556 5 6 1.5340 2.3429 0.4572 6 7 0.3844 2.2690 1.0940 7 14 2.3369 4.0047 0.1690 8 1 3.6139 3.8168 -0.5651 9 1 1.4269 4.8616 -0.6328 10 1 2.6076 4.6568 1.4754 11 6 2.1976 -1.2688 -0.0006 12 6 2.4525 -1.7110 1.4417 13 1 1.5359 -1.7961 2.0255 14 6 3.3640 -2.9413 1.5520 15 6 3.9444 -2.1888 2.7577 16 7 3.5090 -0.9342 2.1165 17 1 -0.3633 0.0754 1.0249 18 1 -0.3633 0.8499 -0.5778 19 1 -0.3633 -0.9253 -0.4472 20 1 -0.0461 3.0775 1.4132 21 1 3.1500 -1.1382 -0.5143 22 1 1.6084 -2.0281 -0.5148 23 1 4.0599 -3.0571 0.7211 24 1 2.8442 -3.8640 1.8098 25 1 5.0271 -2.2786 2.8455 26 1 3.4267 -2.4008 3.6932 27 1 3.1141 -0.2997 2.7944 RHF calculation, no. of doubly occupied orbitals= 32 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000885227873.mol2 27 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:49:12 Heat of formation + Delta-G solvation = 34.857722 kcal Electronic energy + Delta-G solvation = -10164.633181 eV Core-core repulsion = 8344.444656 eV Total energy + Delta-G solvation = -1820.188524 eV No. of doubly occupied orbitals = 32 Molecular weight (most abundant/longest-lived isotopes) = 170.111 amu Computer time = 0.13 seconds Orbital eigenvalues (eV) -40.36544 -37.04399 -33.20473 -29.44120 -28.25557 -27.76828 -24.87622 -22.43562 -20.28258 -18.72472 -17.72074 -16.81585 -15.79703 -15.43372 -15.38621 -14.27325 -14.04356 -13.29325 -12.90862 -12.70995 -12.58617 -12.49112 -12.25796 -11.99295 -11.92229 -11.65887 -11.27488 -10.58640 -9.75000 -8.68826 -7.76351 -5.21477 1.46034 1.47283 1.57808 2.55451 3.36797 3.41898 3.62488 3.90219 4.20237 4.49522 4.57406 4.67806 4.79408 4.86884 4.93598 5.04195 5.16397 5.35311 5.36461 5.52426 5.68801 5.75280 6.40480 6.45371 7.23209 7.95032 8.37322 9.27995 Molecular weight = 170.11amu Principal moments of inertia in cm(-1) A = 0.057479 B = 0.015420 C = 0.013587 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 487.013343 B = 1815.344251 C = 2060.228585 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.178 3.822 2 N -0.619 5.619 3 C -0.228 4.228 4 H 0.062 0.938 5 C -0.059 4.059 6 N -0.944 5.944 7 Si 0.963 3.037 8 H -0.271 1.271 9 H -0.293 1.293 10 H -0.295 1.295 11 C 0.162 3.838 12 C 0.015 3.985 13 H 0.048 0.952 14 C -0.125 4.125 15 C -0.002 4.002 16 N -0.632 5.632 17 H 0.000 1.000 18 H 0.016 0.984 19 H 0.030 0.970 20 H 0.244 0.756 21 H 0.045 0.955 22 H 0.062 0.938 23 H 0.093 0.907 24 H 0.091 0.909 25 H 0.087 0.913 26 H 0.066 0.934 27 H 0.307 0.693 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.094 -9.030 1.090 9.975 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C 0.033 3.967 2 N -0.341 5.341 3 C -0.359 4.359 4 H 0.080 0.920 5 C -0.253 4.253 6 N -0.593 5.593 7 Si 0.793 3.207 8 H -0.196 1.196 9 H -0.220 1.220 10 H -0.222 1.222 11 C 0.035 3.965 12 C -0.098 4.098 13 H 0.066 0.934 14 C -0.164 4.164 15 C -0.132 4.132 16 N -0.256 5.256 17 H 0.019 0.981 18 H 0.035 0.965 19 H 0.048 0.952 20 H 0.053 0.947 21 H 0.063 0.937 22 H 0.081 0.919 23 H 0.112 0.888 24 H 0.109 0.891 25 H 0.105 0.895 26 H 0.084 0.916 27 H 0.119 0.881 Dipole moment (debyes) X Y Z Total from point charges 4.612 -8.670 0.516 9.834 hybrid contribution -0.653 1.080 0.899 1.549 sum 3.959 -7.590 1.415 8.677 Atomic orbital electron populations 1.20536 0.82897 0.95908 0.97362 1.44218 1.01991 1.01946 1.85990 1.19383 0.97170 0.86274 1.33088 0.91985 1.25661 0.98623 1.01413 0.99600 1.70234 1.19370 1.26844 1.42868 0.85241 0.77921 0.80713 0.76847 1.19573 1.21990 1.22205 1.20995 0.95385 0.86665 0.93410 1.23756 0.93635 0.93705 0.98733 0.93410 1.23148 0.98423 0.96280 0.98520 1.23543 1.01797 0.91174 0.96675 1.67307 1.26470 1.08679 1.23169 0.98146 0.96513 0.95185 0.94717 0.93708 0.91936 0.88805 0.89083 0.89466 0.91597 0.88115 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.18 9.05 9.01 127.77 1.15 10.20 15 2 N -0.62 -31.89 2.93 -726.93 -2.13 -34.02 15 3 C -0.23 -12.96 9.67 84.03 0.81 -12.15 15 4 H 0.06 3.55 7.84 -2.91 -0.02 3.53 15 5 C -0.06 -3.44 5.13 84.86 0.44 -3.01 15 6 N -0.94 -57.24 10.59 21.65 0.23 -57.01 15 7 Si 0.96 47.14 29.57 68.60 2.03 49.16 15 8 H -0.27 -12.76 7.11 99.48 0.71 -12.05 15 9 H -0.29 -14.23 7.11 99.48 0.71 -13.53 15 10 H -0.29 -14.43 7.11 99.48 0.71 -13.72 15 11 C 0.16 6.71 5.72 86.38 0.49 7.21 15 12 C 0.02 0.56 4.23 42.19 0.18 0.74 15 13 H 0.05 1.89 8.14 -2.39 -0.02 1.87 15 14 C -0.13 -3.40 8.01 30.94 0.25 -3.15 15 15 C 0.00 -0.05 8.62 83.58 0.72 0.67 15 16 N -0.63 -24.55 8.50 -519.14 -4.41 -28.96 15 17 H 0.00 0.01 7.42 -2.39 -0.02 0.00 15 18 H 0.02 0.90 7.19 -2.39 -0.02 0.89 15 19 H 0.03 1.28 7.84 -2.39 -0.02 1.26 15 20 H 0.24 14.40 8.31 -92.71 -0.77 13.63 15 21 H 0.04 1.90 8.03 -2.39 -0.02 1.88 15 22 H 0.06 2.27 7.86 -2.39 -0.02 2.25 15 23 H 0.09 2.44 8.12 -2.39 -0.02 2.42 15 24 H 0.09 1.99 8.14 -2.39 -0.02 1.97 15 25 H 0.09 2.23 8.14 -2.39 -0.02 2.22 15 26 H 0.07 1.70 8.14 -2.39 -0.02 1.68 15 27 H 0.31 13.00 8.91 -89.70 -0.80 12.20 15 Total: -1.00 -63.91 227.39 0.10 -63.81 By element: Atomic # 1 Polarization: 6.17 SS G_CDS: 0.34 Total: 6.51 kcal Atomic # 6 Polarization: -3.52 SS G_CDS: 4.04 Total: 0.52 kcal Atomic # 7 Polarization: -113.68 SS G_CDS: -6.31 Total: -120.00 kcal Atomic # 14 Polarization: 47.14 SS G_CDS: 2.03 Total: 49.16 kcal Total: -63.91 0.10 -63.81 kcal The number of atoms in the molecule is 27 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000885227873.mol2 27 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 98.670 kcal (2) G-P(sol) polarization free energy of solvation -63.909 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 34.761 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.097 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.812 kcal (6) G-S(sol) free energy of system = (1) + (5) 34.858 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.14 seconds