Wall clock time and date at job start Mon Mar 30 2020 01:49:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46493 * 1 3 3 C 1.36937 * 120.00293 * 2 1 4 4 H 1.07998 * 119.99869 * 202.37078 * 3 2 1 5 5 C 1.38813 * 119.99884 * 22.37359 * 3 2 1 6 6 N 1.31617 * 119.99998 * 11.34731 * 5 3 2 7 7 Si 1.86804 * 119.99948 * 191.35364 * 5 3 2 8 8 H 1.48495 * 109.47230 * 89.99620 * 7 5 3 9 9 H 1.48495 * 109.46933 * 209.99653 * 7 5 3 10 10 H 1.48500 * 109.46952 * 329.99504 * 7 5 3 11 11 C 1.46507 * 119.99920 * 180.02562 * 2 1 3 12 12 C 1.53004 * 109.46941 * 269.99841 * 11 2 1 13 13 H 1.09004 * 113.03251 * 306.72050 * 12 11 2 14 14 C 1.53931 * 113.75908 * 174.99864 * 12 11 2 15 15 C 1.53937 * 86.33917 * 221.96151 * 14 12 11 16 16 N 1.47957 * 86.17972 * 23.72232 * 15 14 12 17 17 H 1.09001 * 109.46851 * 274.18458 * 1 2 3 18 18 H 1.09004 * 109.47542 * 34.18006 * 1 2 3 19 19 H 1.09003 * 109.47323 * 154.18515 * 1 2 3 20 20 H 0.96998 * 120.00146 * 179.97438 * 6 5 3 21 21 H 1.08993 * 109.47071 * 149.99977 * 11 2 1 22 22 H 1.09001 * 109.47124 * 29.99452 * 11 2 1 23 23 H 1.09003 * 113.73367 * 107.60288 * 14 12 11 24 24 H 1.08999 * 113.83101 * 336.33181 * 14 12 11 25 25 H 1.08999 * 113.75906 * 138.03946 * 15 14 12 26 26 H 1.09003 * 113.75729 * 269.40001 * 15 14 12 27 27 H 1.00902 * 111.00268 * 88.20360 * 16 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4649 0.0000 0.0000 3 6 2.1497 1.1859 0.0000 4 1 3.1687 1.2210 -0.3560 5 6 1.5340 2.3428 0.4576 6 7 0.3846 2.2688 1.0946 7 14 2.3367 4.0047 0.1691 8 1 1.8673 4.5633 -1.1242 9 1 1.9687 4.9300 1.2707 10 1 3.8123 3.8418 0.1316 11 6 2.1974 -1.2688 -0.0006 12 6 2.4525 -1.7111 1.4418 13 1 2.9372 -0.9427 2.0441 14 6 3.1110 -3.0975 1.5581 15 6 2.1335 -3.3554 2.7189 16 7 1.2749 -2.3251 2.0940 17 1 -0.3633 0.0750 1.0249 18 1 -0.3634 0.8502 -0.5773 19 1 -0.3634 -0.9251 -0.4475 20 1 -0.0454 3.0772 1.4147 21 1 3.1498 -1.1383 -0.5143 22 1 1.6083 -2.0282 -0.5147 23 1 4.1565 -3.0623 1.8645 24 1 2.9434 -3.7387 0.6927 25 1 1.6970 -4.3541 2.7119 26 1 2.5250 -3.0680 3.6948 27 1 0.6562 -2.7358 1.4108 RHF calculation, no. of doubly occupied orbitals= 32 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000885227876.mol2 27 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:49:14 Heat of formation + Delta-G solvation = 58.415338 kcal Electronic energy + Delta-G solvation = -10116.058622 eV Core-core repulsion = 8296.891633 eV Total energy + Delta-G solvation = -1819.166990 eV No. of doubly occupied orbitals = 32 Molecular weight (most abundant/longest-lived isotopes) = 170.111 amu Computer time = 0.14 seconds Orbital eigenvalues (eV) -38.95988 -35.07059 -31.16875 -27.71408 -26.49370 -25.68966 -23.30199 -20.64228 -19.66755 -16.61206 -15.32473 -14.80999 -14.40186 -13.75851 -13.24424 -12.77487 -12.34882 -12.03489 -11.50189 -11.14544 -10.81232 -10.62810 -10.49373 -10.30289 -10.07374 -9.89301 -9.65428 -8.45628 -7.80610 -6.64222 -5.62092 -3.08072 3.43381 3.49049 3.50874 4.51747 4.63590 4.98336 5.24843 5.53431 5.69055 5.83211 6.01231 6.06207 6.15822 6.27179 6.31230 6.53324 6.83546 6.94221 7.06829 7.50514 7.85780 7.93870 7.96395 8.49424 9.33594 9.96869 10.46277 11.42509 Molecular weight = 170.11amu Principal moments of inertia in cm(-1) A = 0.072660 B = 0.013256 C = 0.012699 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 385.263134 B = 2111.823630 C = 2204.298275 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.169 3.831 2 N -0.597 5.597 3 C -0.256 4.256 4 H 0.067 0.933 5 C 0.002 3.998 6 N -0.903 5.903 7 Si 0.904 3.096 8 H -0.289 1.289 9 H -0.291 1.291 10 H -0.280 1.280 11 C 0.151 3.849 12 C 0.038 3.962 13 H 0.102 0.898 14 C -0.193 4.193 15 C 0.012 3.988 16 N -0.646 5.646 17 H 0.035 0.965 18 H 0.040 0.960 19 H -0.009 1.009 20 H 0.251 0.749 21 H 0.050 0.950 22 H 0.036 0.964 23 H 0.059 0.941 24 H 0.074 0.926 25 H 0.061 0.939 26 H 0.087 0.913 27 H 0.327 0.673 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.153 -8.421 -0.289 8.997 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C 0.024 3.976 2 N -0.319 5.319 3 C -0.386 4.386 4 H 0.085 0.915 5 C -0.197 4.197 6 N -0.548 5.548 7 Si 0.734 3.266 8 H -0.216 1.216 9 H -0.218 1.218 10 H -0.206 1.206 11 C 0.023 3.977 12 C -0.074 4.074 13 H 0.120 0.880 14 C -0.232 4.232 15 C -0.118 4.118 16 N -0.274 5.274 17 H 0.053 0.947 18 H 0.059 0.941 19 H 0.009 0.991 20 H 0.061 0.939 21 H 0.068 0.932 22 H 0.054 0.946 23 H 0.078 0.922 24 H 0.093 0.907 25 H 0.079 0.921 26 H 0.106 0.894 27 H 0.142 0.858 Dipole moment (debyes) X Y Z Total from point charges 2.757 -7.726 0.380 8.212 hybrid contribution 0.754 0.262 -0.699 1.061 sum 3.510 -7.463 -0.318 8.254 Atomic orbital electron populations 1.20771 0.82333 0.94912 0.99589 1.43879 1.01972 1.00311 1.85733 1.19207 0.97998 0.85467 1.35891 0.91494 1.25041 0.97764 0.98430 0.98441 1.70090 1.17801 1.26827 1.40124 0.86264 0.78761 0.84298 0.77250 1.21597 1.21786 1.20588 1.21017 0.96027 0.88776 0.91899 1.24090 0.90014 0.93848 0.99494 0.87996 1.24656 1.00267 0.99594 0.98726 1.23474 0.94642 0.95613 0.98101 1.65164 1.13476 1.20518 1.28247 0.94703 0.94096 0.99074 0.93865 0.93186 0.94597 0.92217 0.90700 0.92094 0.89433 0.85778 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.17 4.35 9.01 59.84 0.54 4.89 15 2 N -0.60 -15.52 2.93 -181.12 -0.53 -16.05 15 3 C -0.26 -7.24 9.67 -15.06 -0.15 -7.38 15 4 H 0.07 1.84 7.84 -52.49 -0.41 1.43 15 5 C 0.00 0.05 5.13 -17.43 -0.09 -0.04 15 6 N -0.90 -27.26 10.59 55.49 0.59 -26.67 15 7 Si 0.90 22.37 29.57 -169.99 -5.03 17.35 15 8 H -0.29 -7.11 7.11 56.52 0.40 -6.71 15 9 H -0.29 -7.28 7.11 56.52 0.40 -6.88 15 10 H -0.28 -6.76 7.11 56.52 0.40 -6.36 15 11 C 0.15 3.18 5.58 -4.04 -0.02 3.16 15 12 C 0.04 0.75 4.57 -66.66 -0.30 0.45 15 13 H 0.10 2.30 8.14 -51.93 -0.42 1.88 15 14 C -0.19 -2.90 7.83 -25.80 -0.20 -3.10 15 15 C 0.01 0.18 8.90 -2.77 -0.02 0.16 15 16 N -0.65 -12.21 8.49 -110.31 -0.94 -13.15 15 17 H 0.03 0.98 7.42 -51.93 -0.39 0.60 15 18 H 0.04 1.13 7.19 -51.93 -0.37 0.75 15 19 H -0.01 -0.21 7.84 -51.93 -0.41 -0.62 15 20 H 0.25 7.34 8.31 -40.82 -0.34 7.00 15 21 H 0.05 1.02 8.03 -51.93 -0.42 0.60 15 22 H 0.04 0.69 7.66 -51.93 -0.40 0.29 15 23 H 0.06 0.84 8.14 -51.93 -0.42 0.41 15 24 H 0.07 1.03 8.10 -51.93 -0.42 0.60 15 25 H 0.06 0.78 8.14 -51.93 -0.42 0.35 15 26 H 0.09 1.29 8.14 -51.93 -0.42 0.87 15 27 H 0.33 5.83 8.44 -39.29 -0.33 5.50 15 LS Contribution 226.98 15.07 3.42 3.42 Total: -1.00 -30.54 226.98 -6.70 -37.24 By element: Atomic # 1 Polarization: 3.70 SS G_CDS: -3.97 Total: -0.27 kcal Atomic # 6 Polarization: -1.63 SS G_CDS: -0.25 Total: -1.88 kcal Atomic # 7 Polarization: -54.99 SS G_CDS: -0.88 Total: -55.86 kcal Atomic # 14 Polarization: 22.37 SS G_CDS: -5.03 Total: 17.35 kcal Total LS contribution 3.42 Total: 3.42 kcal Total: -30.54 -6.70 -37.24 kcal The number of atoms in the molecule is 27 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000885227876.mol2 27 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 95.659 kcal (2) G-P(sol) polarization free energy of solvation -30.539 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 65.120 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.704 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.244 kcal (6) G-S(sol) free energy of system = (1) + (5) 58.415 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.14 seconds